data_A1LXS # _chem_comp.id A1LXS _chem_comp.name "[(2~{R},3~{R},4~{S},5~{R})-4-fluoranyl-5-(5-iodanyl-4-methyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 F I N3 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-05 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.133 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LXS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XPP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LXS C5 C1 C 0 1 Y N N N N N 10.687 8.037 19.727 -2.845 0.862 -0.522 C5 A1LXS 1 A1LXS "C1'" C2 C 0 1 N N R N N N 9.586 11.474 19.756 0.669 1.857 -0.311 "C1'" A1LXS 2 A1LXS "C4'" C3 C 0 1 N N R N N N 7.519 12.671 19.591 2.905 1.519 0.087 "C4'" A1LXS 3 A1LXS "C5'" C4 C 0 1 N N N N N N 6.018 12.309 19.654 3.941 0.482 0.525 "C5'" A1LXS 4 A1LXS C06 C5 C 0 1 N N N N N N 11.663 5.633 19.726 -5.284 0.245 -0.690 C06 A1LXS 5 A1LXS C6 C6 C 0 1 Y N N N N N 11.817 7.157 19.732 -4.151 1.228 -0.839 C6 A1LXS 6 A1LXS C2 C7 C 0 1 Y N N N N N 13.181 8.980 19.782 -3.387 3.325 -1.408 C2 A1LXS 7 A1LXS C4 C8 C 0 1 Y N N N N N 10.900 9.395 19.749 -1.816 1.817 -0.678 C4 A1LXS 8 A1LXS C8 C9 C 0 1 Y N N N N N 8.748 9.191 19.722 -0.888 -0.080 0.080 C8 A1LXS 9 A1LXS C7 C10 C 0 1 Y N N N N N 9.290 7.892 19.714 -2.197 -0.355 -0.033 C7 A1LXS 10 A1LXS "C3'" C11 C 0 1 N N R N N N 8.088 12.120 18.221 2.430 2.350 1.299 "C3'" A1LXS 11 A1LXS "C2'" C12 C 0 1 N N S N N N 9.546 12.058 18.545 0.925 2.578 1.032 "C2'" A1LXS 12 A1LXS "F2'" F1 F 0 1 N N N N N N 10.200 11.282 17.558 0.154 2.006 2.050 "F2'" A1LXS 13 A1LXS I7 I1 I 0 1 N N N N N N 8.207 6.117 19.666 -3.135 -2.174 0.415 I7 A1LXS 14 A1LXS N1 N1 N 0 1 Y N N N N N 13.020 7.662 19.755 -4.374 2.457 -1.275 N1 A1LXS 15 A1LXS N3 N2 N 0 1 Y N N N N N 12.145 9.809 19.774 -2.138 3.028 -1.122 N3 A1LXS 16 A1LXS N9 N3 N 0 1 Y N N N N N 9.720 10.059 19.729 -0.647 1.214 -0.304 N9 A1LXS 17 A1LXS "O4'" O1 O 0 1 N N N N N N 8.204 12.021 20.465 1.714 0.864 -0.401 "O4'" A1LXS 18 A1LXS "O5'" O2 O 0 1 N N N N N N 5.993 11.015 20.140 4.398 -0.246 -0.616 "O5'" A1LXS 19 A1LXS O2P O3 O 0 1 N N N N N N 3.422 10.660 19.393 5.673 -2.103 -1.972 O2P A1LXS 20 A1LXS O3P O4 O 0 1 N N N N N N 5.022 8.688 19.270 6.904 -0.803 -0.047 O3P A1LXS 21 A1LXS "O3'" O5 O 0 1 N N N N N N 7.904 13.087 17.329 3.123 3.598 1.353 "O3'" A1LXS 22 A1LXS P P1 P 0 1 N N N N N N 4.610 10.003 19.979 5.496 -1.421 -0.525 P A1LXS 23 A1LXS H1 H1 H 0 1 N N N N N N 10.415 11.894 20.344 0.742 2.562 -1.139 H1 A1LXS 24 A1LXS H2 H2 H 0 1 N N N N N N 7.647 13.763 19.633 3.322 2.170 -0.682 H2 A1LXS 25 A1LXS H3 H3 H 0 1 N N N N N N 5.482 12.989 20.332 4.784 0.987 0.995 H3 A1LXS 26 A1LXS H4 H4 H 0 1 N N N N N N 5.564 12.357 18.653 3.487 -0.207 1.237 H4 A1LXS 27 A1LXS H5 H5 H 0 1 N N N N N N 12.658 5.163 19.743 -5.704 0.325 0.313 H5 A1LXS 28 A1LXS H6 H6 H 0 1 N N N N N N 11.094 5.319 20.613 -6.057 0.468 -1.426 H6 A1LXS 29 A1LXS H7 H7 H 0 1 N N N N N N 11.127 5.322 18.817 -4.911 -0.766 -0.849 H7 A1LXS 30 A1LXS H8 H8 H 0 1 N N N N N N 14.181 9.387 19.811 -3.615 4.318 -1.767 H8 A1LXS 31 A1LXS H9 H9 H 0 1 N N N N N N 7.695 9.430 19.722 -0.135 -0.775 0.421 H9 A1LXS 32 A1LXS H10 H10 H 0 1 N N N N N N 7.661 11.139 17.968 2.573 1.792 2.224 H10 A1LXS 33 A1LXS H11 H11 H 0 1 N N N N N N 9.959 13.077 18.571 0.710 3.642 0.941 H11 A1LXS 34 A1LXS H12 H12 H 0 1 N N N N N N 2.822 10.908 20.087 6.321 -2.821 -1.992 H12 A1LXS 35 A1LXS H13 H13 H 0 1 N N N N N N 5.096 7.991 19.912 7.258 -0.127 -0.641 H13 A1LXS 36 A1LXS H14 H14 H 0 1 N N N N N N 6.982 13.144 17.109 2.822 4.185 2.060 H14 A1LXS 37 A1LXS O1P O1A O 0 1 N N N N N N 4.397 9.982 21.515 5.048 -2.440 0.450 O1P A1LXS 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LXS "O3'" "C3'" SING N N 1 A1LXS "F2'" "C2'" SING N N 2 A1LXS "C3'" "C2'" SING N N 3 A1LXS "C3'" "C4'" SING N N 4 A1LXS "C2'" "C1'" SING N N 5 A1LXS O3P P SING N N 6 A1LXS O2P P SING N N 7 A1LXS "C4'" "C5'" SING N N 8 A1LXS "C4'" "O4'" SING N N 9 A1LXS "C5'" "O5'" SING N N 10 A1LXS I7 C7 SING N N 11 A1LXS C7 C8 DOUB Y N 12 A1LXS C7 C5 SING Y N 13 A1LXS C8 N9 SING Y N 14 A1LXS C06 C6 SING N N 15 A1LXS C5 C6 DOUB Y N 16 A1LXS C5 C4 SING Y N 17 A1LXS N9 C4 SING Y N 18 A1LXS N9 "C1'" SING N N 19 A1LXS C6 N1 SING Y N 20 A1LXS C4 N3 DOUB Y N 21 A1LXS N1 C2 DOUB Y N 22 A1LXS "C1'" "O4'" SING N N 23 A1LXS N3 C2 SING Y N 24 A1LXS P "O5'" SING N N 25 A1LXS "C1'" H1 SING N N 26 A1LXS "C4'" H2 SING N N 27 A1LXS "C5'" H3 SING N N 28 A1LXS "C5'" H4 SING N N 29 A1LXS C06 H5 SING N N 30 A1LXS C06 H6 SING N N 31 A1LXS C06 H7 SING N N 32 A1LXS C2 H8 SING N N 33 A1LXS C8 H9 SING N N 34 A1LXS "C3'" H10 SING N N 35 A1LXS "C2'" H11 SING N N 36 A1LXS O2P H12 SING N N 37 A1LXS O3P H13 SING N N 38 A1LXS "O3'" H14 SING N N 39 A1LXS P O1P DOUB N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LXS InChI InChI 1.06 "InChI=1S/C12H14FIN3O6P/c1-5-8-6(14)2-17(11(8)16-4-15-5)12-9(13)10(18)7(23-12)3-22-24(19,20)21/h2,4,7,9-10,12,18H,3H2,1H3,(H2,19,20,21)/t7-,9+,10-,12-/m1/s1" A1LXS InChIKey InChI 1.06 GLTADVOSHVFARN-DLYFRVTGSA-N A1LXS SMILES_CANONICAL CACTVS 3.385 "Cc1ncnc2n(cc(I)c12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F" A1LXS SMILES CACTVS 3.385 "Cc1ncnc2n(cc(I)c12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F" A1LXS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2c(cn(c2ncn1)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F)I" A1LXS SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2c(cn(c2ncn1)C3C(C(C(O3)COP(=O)(O)O)O)F)I" # _pdbx_chem_comp_identifier.comp_id A1LXS _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{S},5~{R})-4-fluoranyl-5-(5-iodanyl-4-methyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LXS "Create component" 2024-02-05 PDBJ A1LXS "Modify name" 2024-02-26 PDBJ A1LXS "Modify name" 2024-02-27 PDBJ A1LXS "Initial release" 2024-12-04 RCSB #