data_A1LXU # _chem_comp.id A1LXU _chem_comp.name "5-(2-oxidanylidenepropyl)-8-[(2~{S},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)pentyl]-1,7-dihydropteridine-2,4,6-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N4 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-05 _chem_comp.pdbx_modified_date 2024-10-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LXU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y6X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LXU C01 C1 C 0 1 N N N N N N -65.774 -19.222 -13.095 -0.774 0.946 0.624 C01 A1LXU 1 A1LXU C02 C2 C 0 1 N N N N N N -66.490 -19.133 -11.911 -1.861 0.449 -0.064 C02 A1LXU 2 A1LXU C03 C3 C 0 1 N N N N N N -66.253 -20.164 -10.911 -2.708 1.345 -0.737 C03 A1LXU 3 A1LXU C05 C4 C 0 1 N N N N N N -64.662 -21.227 -12.349 -1.369 3.131 -0.024 C05 A1LXU 4 A1LXU C08 C5 C 0 1 N N N N N N -64.938 -18.301 -15.379 1.472 0.371 1.479 C08 A1LXU 5 A1LXU C09 C6 C 0 1 N N S N N N -64.902 -19.535 -16.328 2.269 -0.192 0.301 C09 A1LXU 6 A1LXU C10 C7 C 0 1 N N S N N N -64.199 -19.177 -17.657 3.755 0.121 0.494 C10 A1LXU 7 A1LXU C13 C8 C 0 1 N N R N N N -64.460 -20.139 -18.845 4.552 -0.443 -0.684 C13 A1LXU 8 A1LXU C14 C9 C 0 1 N N N N N N -63.365 -19.870 -19.899 6.037 -0.130 -0.491 C14 A1LXU 9 A1LXU C18 C10 C 0 1 N N N N N N -67.647 -17.118 -12.843 -1.469 -1.750 0.789 C18 A1LXU 10 A1LXU C19 C11 C 0 1 N N N N N N -67.001 -17.396 -14.192 -0.533 -1.171 1.821 C19 A1LXU 11 A1LXU C21 C12 C 0 1 N N N N N N -68.066 -17.558 -10.462 -3.050 -1.501 -1.051 C21 A1LXU 12 A1LXU C22 C13 C 0 1 N N N N N N -69.539 -17.736 -10.238 -4.431 -1.521 -0.449 C22 A1LXU 13 A1LXU C24 C14 C 0 1 N N N N N N -70.392 -16.617 -10.748 -5.592 -2.057 -1.247 C24 A1LXU 14 A1LXU N04 N1 N 0 1 N N N N N N -65.345 -21.164 -11.182 -2.436 2.666 -0.697 N04 A1LXU 15 A1LXU N06 N2 N 0 1 N N N N N N -64.892 -20.254 -13.269 -0.539 2.298 0.633 N06 A1LXU 16 A1LXU N07 N3 N 0 1 N N N N N N -65.851 -18.358 -14.195 0.050 0.072 1.294 N07 A1LXU 17 A1LXU N17 N4 N 0 1 N N N N N N -67.422 -17.965 -11.758 -2.104 -0.938 -0.083 N17 A1LXU 18 A1LXU O11 O1 O 0 1 N N N N N N -64.129 -20.638 -15.836 2.086 -1.608 0.235 O11 A1LXU 19 A1LXU O12 O2 O 0 1 N N N N N N -64.457 -17.855 -18.113 3.939 1.536 0.560 O12 A1LXU 20 A1LXU O15 O3 O 0 1 N N N N N N -64.493 -21.528 -18.477 4.368 -1.859 -0.750 O15 A1LXU 21 A1LXU O16 O4 O 0 1 N N N N N N -62.056 -20.095 -19.370 6.766 -0.553 -1.645 O16 A1LXU 22 A1LXU O20 O5 O 0 1 N N N N N N -68.371 -16.137 -12.763 -1.650 -2.948 0.742 O20 A1LXU 23 A1LXU O25 O6 O 0 1 N N N N N N -63.859 -22.119 -12.579 -1.148 4.327 -0.009 O25 A1LXU 24 A1LXU O26 O7 O 0 1 N N N N N N -66.765 -20.288 -9.800 -3.679 0.934 -1.351 O26 A1LXU 25 A1LXU O1 O8 O 0 1 N Y N N N N -69.882 -18.409 -9.259 -4.608 -1.108 0.671 O1 A1LXU 26 A1LXU H082 H1 H 0 0 N N N N N N -63.917 -18.149 -14.999 1.822 -0.084 2.405 H082 A1LXU 27 A1LXU H081 H2 H 0 0 N N N N N N -65.237 -17.432 -15.983 1.613 1.451 1.529 H081 A1LXU 28 A1LXU H091 H3 H 0 0 N N N N N N -65.934 -19.850 -16.541 1.919 0.263 -0.626 H091 A1LXU 29 A1LXU H101 H4 H 0 0 N N N N N N -63.120 -19.244 -17.451 4.104 -0.335 1.420 H101 A1LXU 30 A1LXU H131 H5 H 0 0 N N N N N N -65.427 -19.863 -19.290 4.202 0.012 -1.611 H131 A1LXU 31 A1LXU H141 H6 H 0 0 N N N N N N -63.440 -18.824 -20.232 6.167 0.943 -0.352 H141 A1LXU 32 A1LXU H142 H7 H 0 0 N N N N N N -63.523 -20.540 -20.757 6.408 -0.658 0.387 H142 A1LXU 33 A1LXU H192 H8 H 0 0 N N N N N N -66.637 -16.438 -14.593 -1.087 -0.955 2.734 H192 A1LXU 34 A1LXU H191 H9 H 0 0 N N N N N N -67.777 -17.801 -14.858 0.261 -1.886 2.035 H191 A1LXU 35 A1LXU H212 H10 H 0 0 N N N N N N -67.559 -18.127 -9.669 -2.748 -2.518 -1.303 H212 A1LXU 36 A1LXU H211 H11 H 0 0 N N N N N N -67.858 -16.485 -10.334 -3.055 -0.889 -1.952 H211 A1LXU 37 A1LXU H241 H13 H 0 0 N N N N N N -71.296 -16.532 -10.127 -5.241 -2.381 -2.227 H241 A1LXU 38 A1LXU H242 H14 H 0 0 N N N N N N -69.826 -15.675 -10.702 -6.035 -2.903 -0.721 H242 A1LXU 39 A1LXU H243 H15 H 0 0 N N N N N N -70.680 -16.821 -11.790 -6.341 -1.274 -1.370 H243 A1LXU 40 A1LXU H041 H16 H 0 0 N N N N N N -65.185 -21.869 -10.491 -3.018 3.289 -1.159 H041 A1LXU 41 A1LXU H061 H17 H 0 0 N N N N N N -64.384 -20.295 -14.129 0.226 2.654 1.112 H061 A1LXU 42 A1LXU H111 H18 H 0 0 N N N N N N -64.489 -20.934 -15.008 2.376 -2.079 1.028 H111 A1LXU 43 A1LXU H121 H19 H 0 0 N N N N N N -64.305 -17.240 -17.405 3.648 2.008 -0.233 H121 A1LXU 44 A1LXU H151 H20 H 0 0 N N N N N N -65.173 -21.668 -17.829 4.658 -2.330 0.043 H151 A1LXU 45 A1LXU H161 H21 H 0 0 N N N N N N -61.408 -19.921 -20.042 7.717 -0.385 -1.592 H161 A1LXU 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LXU C14 O16 SING N N 1 A1LXU C14 C13 SING N N 2 A1LXU C13 O15 SING N N 3 A1LXU C13 C10 SING N N 4 A1LXU O12 C10 SING N N 5 A1LXU C10 C09 SING N N 6 A1LXU C09 O11 SING N N 7 A1LXU C09 C08 SING N N 8 A1LXU C08 N07 SING N N 9 A1LXU N07 C19 SING N N 10 A1LXU N07 C01 SING N N 11 A1LXU C19 C18 SING N N 12 A1LXU N06 C01 SING N N 13 A1LXU N06 C05 SING N N 14 A1LXU C01 C02 DOUB N N 15 A1LXU C18 O20 DOUB N N 16 A1LXU C18 N17 SING N N 17 A1LXU O25 C05 DOUB N N 18 A1LXU C05 N04 SING N N 19 A1LXU C02 N17 SING N N 20 A1LXU C02 C03 SING N N 21 A1LXU N17 C21 SING N N 22 A1LXU N04 C03 SING N N 23 A1LXU C03 O26 DOUB N N 24 A1LXU C24 C22 SING N N 25 A1LXU C21 C22 SING N N 26 A1LXU C22 O1 DOUB N N 27 A1LXU C08 H082 SING N N 28 A1LXU C08 H081 SING N N 29 A1LXU C09 H091 SING N N 30 A1LXU C10 H101 SING N N 31 A1LXU C13 H131 SING N N 32 A1LXU C14 H141 SING N N 33 A1LXU C14 H142 SING N N 34 A1LXU C19 H192 SING N N 35 A1LXU C19 H191 SING N N 36 A1LXU C21 H212 SING N N 37 A1LXU C21 H211 SING N N 38 A1LXU C24 H241 SING N N 39 A1LXU C24 H242 SING N N 40 A1LXU C24 H243 SING N N 41 A1LXU N04 H041 SING N N 42 A1LXU N06 H061 SING N N 43 A1LXU O11 H111 SING N N 44 A1LXU O12 H121 SING N N 45 A1LXU O15 H151 SING N N 46 A1LXU O16 H161 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LXU InChI InChI 1.06 "InChI=1S/C14H20N4O8/c1-6(20)2-18-9(23)4-17(3-7(21)11(24)8(22)5-19)12-10(18)13(25)16-14(26)15-12/h7-8,11,19,21-22,24H,2-5H2,1H3,(H2,15,16,25,26)/t7-,8+,11-/m0/s1" A1LXU InChIKey InChI 1.06 HUQODSLWOXPUOK-RNSXUZJQSA-N A1LXU SMILES_CANONICAL CACTVS 3.385 "CC(=O)CN1C(=O)CN(C[C@H](O)[C@H](O)[C@H](O)CO)C2=C1C(=O)NC(=O)N2" A1LXU SMILES CACTVS 3.385 "CC(=O)CN1C(=O)CN(C[CH](O)[CH](O)[CH](O)CO)C2=C1C(=O)NC(=O)N2" A1LXU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)CN1C(=O)CN(C2=C1C(=O)NC(=O)N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O" A1LXU SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)CN1C(=O)CN(C2=C1C(=O)NC(=O)N2)CC(C(C(CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1LXU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(2-oxidanylidenepropyl)-8-[(2~{S},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)pentyl]-1,7-dihydropteridine-2,4,6-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LXU "Create component" 2024-02-05 PDBJ A1LXU "Modify linking type" 2024-03-06 PDBJ A1LXU "Modify formula" 2024-03-06 PDBJ A1LXU "Modify PCM" 2024-09-27 PDBE A1LXU "Initial release" 2024-10-30 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1LXU _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C22 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #