data_A1LY4 # _chem_comp.id A1LY4 _chem_comp.name "4-(1H-imidazol-5-ylmethyl)piperidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H15 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-12 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LY4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LY4 N12 N1 N 0 1 Y N N N N N ? ? ? -2.524 -0.874 -0.643 N12 A1LY4 1 A1LY4 C01 C1 C 0 1 N N N N N N ? ? ? 1.004 0.948 0.298 C01 A1LY4 2 A1LY4 C02 C2 C 0 1 N N N N N N ? ? ? 2.220 1.497 -0.453 C02 A1LY4 3 A1LY4 C04 C3 C 0 1 N N N N N N ? ? ? 3.273 -0.686 -0.459 C04 A1LY4 4 A1LY4 C05 C4 C 0 1 N N N N N N ? ? ? 2.087 -1.300 0.292 C05 A1LY4 5 A1LY4 C06 C5 C 0 1 N N N N N N ? ? ? 0.812 -0.528 -0.060 C06 A1LY4 6 A1LY4 C07 C6 C 0 1 N N N N N N ? ? ? -0.365 -1.097 0.734 C07 A1LY4 7 A1LY4 C08 C7 C 0 1 Y N N N N N ? ? ? -1.639 -0.420 0.298 C08 A1LY4 8 A1LY4 C09 C8 C 0 1 Y N N N N N ? ? ? -2.125 0.748 0.757 C09 A1LY4 9 A1LY4 C11 C9 C 0 1 Y N N N N N ? ? ? -3.518 0.036 -0.729 C11 A1LY4 10 A1LY4 N03 N2 N 0 1 N N N N N N ? ? ? 3.414 0.726 -0.082 N03 A1LY4 11 A1LY4 N10 N3 N 0 1 Y N N N N N ? ? ? -3.276 1.001 0.116 N10 A1LY4 12 A1LY4 H1 H1 H 0 1 N N N N N N ? ? ? -2.449 -1.695 -1.155 H1 A1LY4 13 A1LY4 H2 H2 H 0 1 N N N N N N ? ? ? 1.165 1.045 1.371 H2 A1LY4 14 A1LY4 H3 H3 H 0 1 N N N N N N ? ? ? 0.116 1.511 0.011 H3 A1LY4 15 A1LY4 H4 H4 H 0 1 N N N N N N ? ? ? 2.053 1.413 -1.527 H4 A1LY4 16 A1LY4 H5 H5 H 0 1 N N N N N N ? ? ? 2.368 2.544 -0.189 H5 A1LY4 17 A1LY4 H6 H6 H 0 1 N N N N N N ? ? ? 4.185 -1.224 -0.200 H6 A1LY4 18 A1LY4 H7 H7 H 0 1 N N N N N N ? ? ? 3.101 -0.759 -1.532 H7 A1LY4 19 A1LY4 H8 H8 H 0 1 N N N N N N ? ? ? 1.973 -2.344 -0.000 H8 A1LY4 20 A1LY4 H9 H9 H 0 1 N N N N N N ? ? ? 2.265 -1.239 1.366 H9 A1LY4 21 A1LY4 H10 H10 H 0 1 N N N N N N ? ? ? 0.613 -0.622 -1.127 H10 A1LY4 22 A1LY4 H11 H11 H 0 1 N N N N N N ? ? ? -0.443 -2.169 0.551 H11 A1LY4 23 A1LY4 H12 H12 H 0 1 N N N N N N ? ? ? -0.206 -0.920 1.798 H12 A1LY4 24 A1LY4 H13 H13 H 0 1 N N N N N N ? ? ? -1.669 1.373 1.512 H13 A1LY4 25 A1LY4 H14 H14 H 0 1 N N N N N N ? ? ? -4.373 -0.026 -1.386 H14 A1LY4 26 A1LY4 H15 H15 H 0 1 N N N N N N ? ? ? 3.613 0.820 0.903 H15 A1LY4 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LY4 N03 C04 SING N N 1 A1LY4 N03 C02 SING N N 2 A1LY4 C04 C05 SING N N 3 A1LY4 C02 C01 SING N N 4 A1LY4 C05 C06 SING N N 5 A1LY4 C06 C01 SING N N 6 A1LY4 C06 C07 SING N N 7 A1LY4 N10 C09 SING Y N 8 A1LY4 N10 C11 DOUB Y N 9 A1LY4 C09 C08 DOUB Y N 10 A1LY4 C11 N12 SING Y N 11 A1LY4 C08 C07 SING N N 12 A1LY4 C08 N12 SING Y N 13 A1LY4 N12 H1 SING N N 14 A1LY4 C01 H2 SING N N 15 A1LY4 C01 H3 SING N N 16 A1LY4 C02 H4 SING N N 17 A1LY4 C02 H5 SING N N 18 A1LY4 C04 H6 SING N N 19 A1LY4 C04 H7 SING N N 20 A1LY4 C05 H8 SING N N 21 A1LY4 C05 H9 SING N N 22 A1LY4 C06 H10 SING N N 23 A1LY4 C07 H11 SING N N 24 A1LY4 C07 H12 SING N N 25 A1LY4 C09 H13 SING N N 26 A1LY4 C11 H14 SING N N 27 A1LY4 N03 H15 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LY4 InChI InChI 1.06 "InChI=1S/C9H15N3/c1-3-10-4-2-8(1)5-9-6-11-7-12-9/h6-8,10H,1-5H2,(H,11,12)" A1LY4 InChIKey InChI 1.06 MCNGUYXRBCIGOV-UHFFFAOYSA-N A1LY4 SMILES_CANONICAL CACTVS 3.385 "C1CC(CCN1)Cc2[nH]cnc2" A1LY4 SMILES CACTVS 3.385 "C1CC(CCN1)Cc2[nH]cnc2" A1LY4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c([nH]cn1)CC2CCNCC2" A1LY4 SMILES "OpenEye OEToolkits" 2.0.7 "c1c([nH]cn1)CC2CCNCC2" # _pdbx_chem_comp_identifier.comp_id A1LY4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(1~{H}-imidazol-5-ylmethyl)piperidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LY4 "Create component" 2024-03-12 PDBJ A1LY4 "Initial release" 2024-06-05 RCSB #