data_A1LYF
#
_chem_comp.id A1LYF
_chem_comp.name "(3~{Z},6~{S})-3-(1~{H}-imidazol-4-ylmethylidene)-6-propan-2-yl-piperazine-2,5-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H14 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-02-16
_chem_comp.pdbx_modified_date 2025-01-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 234.254
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1LYF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8Y9G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1LYF C1 C1 C 0 1 Y N N N N N 150.702 119.225 112.479 -2.520 0.305 0.152 C1 A1LYF 1
A1LYF C2 C2 C 0 1 N N N N N N 149.725 118.339 111.949 -1.420 1.278 0.150 C2 A1LYF 2
A1LYF C3 C3 C 0 1 N N N N N N 148.983 118.499 110.817 -0.190 0.908 -0.280 C3 A1LYF 3
A1LYF C4 C4 C 0 1 N N N N N N 148.538 117.331 110.073 0.925 1.865 -0.289 C4 A1LYF 4
A1LYF N5 N1 N 0 1 N N N N N N 147.578 117.573 109.175 2.184 1.415 -0.412 N5 A1LYF 5
A1LYF C6 C5 C 0 1 N N S N N N 146.651 118.700 109.211 2.505 -0.002 -0.493 C6 A1LYF 6
A1LYF C7 C6 C 0 1 N N N N N N 147.432 119.934 109.629 1.317 -0.839 -0.855 C7 A1LYF 7
A1LYF N8 N2 N 0 1 N N N N N N 148.555 119.729 110.358 0.056 -0.402 -0.723 N8 A1LYF 8
A1LYF O9 O1 O 0 1 N N N N N N 149.004 116.221 110.257 0.708 3.059 -0.187 O9 A1LYF 9
A1LYF O10 O2 O 0 1 N N N N N N 147.109 121.053 109.271 1.503 -1.960 -1.280 O10 A1LYF 10
A1LYF C11 C7 C 0 1 Y N N N N N 151.656 119.011 113.434 -3.805 0.539 0.556 C11 A1LYF 11
A1LYF N12 N3 N 0 1 Y N N N N N 152.344 120.182 113.554 -4.486 -0.629 0.391 N12 A1LYF 12
A1LYF C13 C8 C 0 1 Y N N N N N 151.809 121.049 112.698 -3.616 -1.546 -0.106 C13 A1LYF 13
A1LYF N14 N4 N 0 1 Y N N N N N 150.808 120.530 112.017 -2.448 -0.988 -0.253 N14 A1LYF 14
A1LYF C15 C9 C 0 1 N N N N N N 145.399 118.366 110.047 3.043 -0.466 0.863 C15 A1LYF 15
A1LYF C16 C10 C 0 1 N N N N N N 144.131 118.756 109.323 1.938 -0.352 1.915 C16 A1LYF 16
A1LYF C17 C11 C 0 1 N N N N N N 145.418 118.932 111.460 3.500 -1.922 0.758 C17 A1LYF 17
A1LYF H1 H1 H 0 1 N N N N N N 149.550 117.432 112.509 -1.592 2.288 0.492 H1 A1LYF 18
A1LYF H4 H4 H 0 1 N N N N N N 147.487 116.929 108.416 2.908 2.060 -0.449 H4 A1LYF 19
A1LYF H5 H5 H 0 1 N N N N N N 146.304 118.876 108.182 3.280 -0.146 -1.245 H5 A1LYF 20
A1LYF H6 H6 H 0 1 N N N N N N 149.115 120.527 110.580 -0.687 -0.987 -0.940 H6 A1LYF 21
A1LYF H7 H7 H 0 1 N N N N N N 151.830 118.098 113.983 -4.203 1.469 0.934 H7 A1LYF 22
A1LYF H8 H8 H 0 1 N N N N N N 153.110 120.357 114.172 -5.423 -0.779 0.592 H8 A1LYF 23
A1LYF H9 H9 H 0 1 N N N N N N 152.156 122.064 112.575 -3.855 -2.572 -0.344 H9 A1LYF 24
A1LYF H11 H11 H 0 1 N N N N N N 145.379 117.271 110.149 3.886 0.160 1.152 H11 A1LYF 25
A1LYF H12 H12 H 0 1 N N N N N N 143.260 118.504 109.946 2.321 -0.683 2.881 H12 A1LYF 26
A1LYF H13 H13 H 0 1 N N N N N N 144.140 119.838 109.125 1.612 0.685 1.989 H13 A1LYF 27
A1LYF H14 H14 H 0 1 N N N N N N 144.070 118.210 108.370 1.094 -0.979 1.625 H14 A1LYF 28
A1LYF H15 H15 H 0 1 N N N N N N 144.493 118.647 111.982 4.287 -2.003 0.009 H15 A1LYF 29
A1LYF H16 H16 H 0 1 N N N N N N 146.285 118.529 112.005 3.883 -2.253 1.724 H16 A1LYF 30
A1LYF H17 H17 H 0 1 N N N N N N 145.491 120.029 111.415 2.656 -2.548 0.469 H17 A1LYF 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1LYF N5 C6 SING N N 1
A1LYF N5 C4 SING N N 2
A1LYF C6 C7 SING N N 3
A1LYF C6 C15 SING N N 4
A1LYF O10 C7 DOUB N N 5
A1LYF C16 C15 SING N N 6
A1LYF C7 N8 SING N N 7
A1LYF C15 C17 SING N N 8
A1LYF C4 O9 DOUB N N 9
A1LYF C4 C3 SING N N 10
A1LYF N8 C3 SING N N 11
A1LYF C3 C2 DOUB N Z 12
A1LYF C2 C1 SING N N 13
A1LYF N14 C1 SING Y N 14
A1LYF N14 C13 DOUB Y N 15
A1LYF C1 C11 DOUB Y N 16
A1LYF C13 N12 SING Y N 17
A1LYF C11 N12 SING Y N 18
A1LYF C2 H1 SING N N 19
A1LYF N5 H4 SING N N 20
A1LYF C6 H5 SING N N 21
A1LYF N8 H6 SING N N 22
A1LYF C11 H7 SING N N 23
A1LYF N12 H8 SING N N 24
A1LYF C13 H9 SING N N 25
A1LYF C15 H11 SING N N 26
A1LYF C16 H12 SING N N 27
A1LYF C16 H13 SING N N 28
A1LYF C16 H14 SING N N 29
A1LYF C17 H15 SING N N 30
A1LYF C17 H16 SING N N 31
A1LYF C17 H17 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1LYF InChI InChI 1.06 "InChI=1S/C11H14N4O2/c1-6(2)9-11(17)14-8(10(16)15-9)3-7-4-12-5-13-7/h3-6,9H,1-2H3,(H,12,13)(H,14,17)(H,15,16)/b8-3-/t9-/m0/s1"
A1LYF InChIKey InChI 1.06 VFDJEJCELMPUBS-CHDHTGKKSA-N
A1LYF SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H]1NC(=O)\C(NC1=O)=C\c2c[nH]cn2"
A1LYF SMILES CACTVS 3.385 "CC(C)[CH]1NC(=O)C(NC1=O)=Cc2c[nH]cn2"
A1LYF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H]1C(=O)N/C(=C\c2c[nH]cn2)/C(=O)N1"
A1LYF SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1C(=O)NC(=Cc2c[nH]cn2)C(=O)N1"
#
_pdbx_chem_comp_identifier.comp_id A1LYF
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{Z},6~{S})-3-(1~{H}-imidazol-4-ylmethylidene)-6-propan-2-yl-piperazine-2,5-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1LYF "Create component" 2024-02-16 PDBJ
A1LYF "Initial release" 2025-02-05 RCSB
#