data_A1LYT # _chem_comp.id A1LYT _chem_comp.name "(5R)-5-methyl-5-[[(1R,2R,5R)-2-methyl-5-[(2R)-1-oxidanylidenepropan-2-yl]cyclopentyl]methyl]-2-propan-2-yl-cyclopenta-1,3-diene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-05 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YHG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LYT C11 C1 C 0 1 N N N N N N -1.205 3.115 38.434 -1.596 1.739 0.707 C11 A1LYT 1 A1LYT C12 C2 C 0 1 N N N N N N -0.675 4.173 39.401 -0.391 1.357 0.287 C12 A1LYT 2 A1LYT C13 C3 C 0 1 N N N N N N 1.334 5.654 39.226 0.234 -1.060 0.262 C13 A1LYT 3 A1LYT C14 C4 C 0 1 N N R N N N 2.463 4.579 39.128 1.705 -0.957 -0.146 C14 A1LYT 4 A1LYT C15 C5 C 0 1 N N S N N N 3.623 5.148 39.400 2.335 0.306 0.466 C15 A1LYT 5 A1LYT C10 C6 C 0 1 N N N N N N -1.106 1.232 36.113 -4.637 2.164 0.017 C10 A1LYT 6 A1LYT C01 C7 C 0 1 N N N N N N -0.967 6.516 38.496 -0.125 0.173 -1.895 C01 A1LYT 7 A1LYT C02 C8 C 0 1 N N R N N N 0.014 5.264 38.586 -0.567 0.041 -0.436 C02 A1LYT 8 A1LYT C03 C9 C 0 1 N N N N N N 0.164 4.612 37.165 -2.048 -0.257 -0.359 C03 A1LYT 9 A1LYT C04 C10 C 0 1 N N N N N N 0.617 5.415 35.942 -2.714 -1.388 -0.893 C04 A1LYT 10 A1LYT C07 C11 C 0 1 N N N N N N -0.947 3.604 37.079 -2.611 0.767 0.322 C07 A1LYT 11 A1LYT C08 C12 C 0 1 N N N N N N -1.250 2.709 35.801 -4.079 0.884 0.641 C08 A1LYT 12 A1LYT C09 C13 C 0 1 N N N N N N -2.650 3.037 35.240 -4.268 0.931 2.159 C09 A1LYT 13 A1LYT C16 C14 C 0 1 N N R N N N 4.304 5.695 38.087 2.883 1.207 -0.642 C16 A1LYT 14 A1LYT C17 C15 C 0 1 N N N N N N 5.306 6.802 38.461 1.890 2.338 -0.918 C17 A1LYT 15 A1LYT C18 C16 C 0 1 N N N N N N 5.009 4.522 37.341 4.202 1.793 -0.207 C18 A1LYT 16 A1LYT C20 C17 C 0 1 N N N N N N 4.579 3.944 40.001 3.485 -0.172 1.377 C20 A1LYT 17 A1LYT C21 C18 C 0 1 N N N N N N 3.597 2.760 40.234 3.104 -1.630 1.736 C21 A1LYT 18 A1LYT C22 C19 C 0 1 N N R N N N 2.391 3.408 40.333 2.494 -2.159 0.415 C22 A1LYT 19 A1LYT C23 C20 C 0 1 N N N N N N 2.341 4.101 41.682 1.554 -3.334 0.692 C23 A1LYT 20 A1LYT O05 O1 O 0 1 N N N N N N 0.973 6.631 36.046 -3.918 -1.505 -0.759 O05 A1LYT 21 A1LYT O06 O2 O 0 1 N N N N N N 0.653 4.855 34.792 -2.014 -2.335 -1.552 O06 A1LYT 22 A1LYT O19 O3 O 0 1 N N N N N N 4.593 4.137 36.274 5.201 1.575 -0.849 O19 A1LYT 23 A1LYT H111 H1 H 0 0 N N N N N N -1.680 2.182 38.700 -1.794 2.644 1.262 H111 A1LYT 24 A1LYT H121 H2 H 0 0 N N N N N N -0.771 4.152 40.476 0.538 1.889 0.434 H121 A1LYT 25 A1LYT H132 H3 H 0 0 N N N N N N 1.693 6.570 38.735 -0.157 -2.034 -0.030 H132 A1LYT 26 A1LYT H131 H4 H 0 0 N N N N N N 1.149 5.857 40.291 0.148 -0.942 1.342 H131 A1LYT 27 A1LYT H141 H5 H 0 0 N N N N N N 2.427 4.079 38.149 1.790 -0.929 -1.232 H141 A1LYT 28 A1LYT H151 H6 H 0 0 N N N N N N 3.557 5.953 40.146 1.593 0.846 1.054 H151 A1LYT 29 A1LYT H101 H7 H 0 0 N N N N N N -0.099 1.037 36.509 -4.108 3.026 0.423 H101 A1LYT 30 A1LYT H103 H8 H 0 0 N N N N N N -1.857 0.941 36.862 -4.502 2.131 -1.064 H103 A1LYT 31 A1LYT H102 H9 H 0 0 N N N N N N -1.258 0.647 35.194 -5.699 2.249 0.249 H102 A1LYT 32 A1LYT H012 H10 H 0 0 N N N N N N -1.072 6.973 39.491 -0.436 -0.712 -2.451 H012 A1LYT 33 A1LYT H013 H11 H 0 0 N N N N N N -0.553 7.256 37.795 -0.585 1.058 -2.335 H013 A1LYT 34 A1LYT H011 H12 H 0 0 N N N N N N -1.953 6.184 38.139 0.960 0.268 -1.940 H011 A1LYT 35 A1LYT H081 H13 H 0 0 N N N N N N -0.508 2.972 35.033 -4.609 0.021 0.236 H081 A1LYT 36 A1LYT H093 H14 H 0 0 N N N N N N -2.717 4.114 35.026 -5.330 1.015 2.390 H093 A1LYT 37 A1LYT H091 H15 H 0 0 N N N N N N -2.816 2.468 34.313 -3.871 0.019 2.603 H091 A1LYT 38 A1LYT H092 H16 H 0 0 N N N N N N -3.415 2.762 35.981 -3.739 1.793 2.564 H092 A1LYT 39 A1LYT H161 H17 H 0 0 N N N N N N 3.525 6.117 37.435 3.028 0.621 -1.549 H161 A1LYT 40 A1LYT H173 H18 H 0 0 N N N N N N 4.779 7.613 38.985 0.950 1.916 -1.276 H173 A1LYT 41 A1LYT H172 H19 H 0 0 N N N N N N 6.083 6.386 39.119 1.711 2.897 0.000 H172 A1LYT 42 A1LYT H171 H20 H 0 0 N N N N N N 5.772 7.198 37.547 2.300 3.005 -1.676 H171 A1LYT 43 A1LYT H181 H21 H 0 0 N N N N N N 5.875 4.050 37.781 4.253 2.408 0.679 H181 A1LYT 44 A1LYT H202 H22 H 0 0 N N N N N N 5.360 3.667 39.277 4.433 -0.147 0.840 H202 A1LYT 45 A1LYT H201 H23 H 0 0 N N N N N N 5.049 4.254 40.946 3.540 0.443 2.276 H201 A1LYT 46 A1LYT H212 H24 H 0 0 N N N N N N 3.606 2.060 39.386 3.989 -2.204 2.010 H212 A1LYT 47 A1LYT H211 H25 H 0 0 N N N N N N 3.837 2.217 41.160 2.368 -1.650 2.540 H211 A1LYT 48 A1LYT H221 H26 H 0 0 N N N N N N 1.515 2.763 40.170 3.282 -2.455 -0.278 H221 A1LYT 49 A1LYT H232 H27 H 0 0 N N N N N N 1.382 4.630 41.788 1.068 -3.637 -0.236 H232 A1LYT 50 A1LYT H233 H28 H 0 0 N N N N N N 2.437 3.353 42.482 2.127 -4.171 1.092 H233 A1LYT 51 A1LYT H231 H29 H 0 0 N N N N N N 3.168 4.823 41.754 0.798 -3.032 1.416 H231 A1LYT 52 A1LYT H1 H30 H 0 1 N N N N N N 0.962 5.478 34.145 -2.554 -3.067 -1.880 H1 A1LYT 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LYT C02 C01 SING N N 1 A1LYT O05 C04 DOUB N N 2 A1LYT O06 C04 SING N N 3 A1LYT C04 C03 SING N N 4 A1LYT C07 C03 DOUB N N 5 A1LYT C09 C08 SING N N 6 A1LYT C10 C08 SING N N 7 A1LYT C08 C07 SING N N 8 A1LYT C11 C07 SING N N 9 A1LYT C12 C11 DOUB N N 10 A1LYT C03 C02 SING N N 11 A1LYT C13 C02 SING N N 12 A1LYT C14 C13 SING N N 13 A1LYT C15 C14 SING N N 14 A1LYT C17 C16 SING N N 15 A1LYT C18 C16 SING N N 16 A1LYT O19 C18 DOUB N N 17 A1LYT C16 C15 SING N N 18 A1LYT C20 C15 SING N N 19 A1LYT C21 C20 SING N N 20 A1LYT C22 C21 SING N N 21 A1LYT C23 C22 SING N N 22 A1LYT C02 C12 SING N N 23 A1LYT C14 C22 SING N N 24 A1LYT C11 H111 SING N N 25 A1LYT C12 H121 SING N N 26 A1LYT C13 H132 SING N N 27 A1LYT C13 H131 SING N N 28 A1LYT C14 H141 SING N N 29 A1LYT C15 H151 SING N N 30 A1LYT C10 H101 SING N N 31 A1LYT C10 H103 SING N N 32 A1LYT C10 H102 SING N N 33 A1LYT C01 H012 SING N N 34 A1LYT C01 H013 SING N N 35 A1LYT C01 H011 SING N N 36 A1LYT C08 H081 SING N N 37 A1LYT C09 H093 SING N N 38 A1LYT C09 H091 SING N N 39 A1LYT C09 H092 SING N N 40 A1LYT C16 H161 SING N N 41 A1LYT C17 H173 SING N N 42 A1LYT C17 H172 SING N N 43 A1LYT C17 H171 SING N N 44 A1LYT C18 H181 SING N N 45 A1LYT C20 H202 SING N N 46 A1LYT C20 H201 SING N N 47 A1LYT C21 H212 SING N N 48 A1LYT C21 H211 SING N N 49 A1LYT C22 H221 SING N N 50 A1LYT C23 H232 SING N N 51 A1LYT C23 H233 SING N N 52 A1LYT C23 H231 SING N N 53 A1LYT O06 H1 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LYT InChI InChI 1.06 "InChI=1S/C20H30O3/c1-12(2)15-8-9-20(5,18(15)19(22)23)10-17-13(3)6-7-16(17)14(4)11-21/h8-9,11-14,16-17H,6-7,10H2,1-5H3,(H,22,23)/t13-,14+,16-,17-,20+/m1/s1" A1LYT InChIKey InChI 1.06 VQPPHPCZHCLABH-AENLNBOZSA-N A1LYT SMILES_CANONICAL CACTVS 3.385 "CC(C)C1=C(C(O)=O)[C@](C)(C[C@@H]2[C@H](C)CC[C@@H]2[C@@H](C)C=O)C=C1" A1LYT SMILES CACTVS 3.385 "CC(C)C1=C(C(O)=O)[C](C)(C[CH]2[CH](C)CC[CH]2[CH](C)C=O)C=C1" A1LYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC[C@H]([C@@H]1C[C@@]2(C=CC(=C2C(=O)O)C(C)C)C)[C@@H](C)C=O" A1LYT SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(C1CC2(C=CC(=C2C(=O)O)C(C)C)C)C(C)C=O" # _pdbx_chem_comp_identifier.comp_id A1LYT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{R})-5-methyl-5-[[(1~{R},2~{R},5~{R})-2-methyl-5-[(2~{R})-1-oxidanylidenepropan-2-yl]cyclopentyl]methyl]-2-propan-2-yl-cyclopenta-1,3-diene-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LYT "Create component" 2024-03-05 PDBJ A1LYT "Modify PCM" 2024-09-27 PDBE A1LYT "Initial release" 2025-10-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1LYT _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #