data_A1LYZ # _chem_comp.id A1LYZ _chem_comp.name "(4-methoxyphenyl)methyl ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-11 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 433.498 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LYZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YLS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LYZ C10 C1 C 0 1 N N N N N N 7.337 1.742 24.782 0.990 -2.486 -0.181 C10 A1LYZ 1 A1LYZ N2 N1 N 0 1 N N N N N N 7.343 1.543 21.300 3.174 -0.497 -0.708 N2 A1LYZ 2 A1LYZ C11 C2 C 0 1 N N N N N N 6.469 1.346 25.976 0.063 -3.208 0.798 C11 A1LYZ 3 A1LYZ C12 C3 C 0 1 N N N N N N 6.674 2.364 27.083 0.104 -4.713 0.523 C12 A1LYZ 4 A1LYZ O2 O1 O 0 1 N N N N N N 7.604 -1.691 22.284 -1.271 -1.041 1.667 O2 A1LYZ 5 A1LYZ C13 C4 C 0 1 N N N N N N 5.001 1.324 25.575 0.525 -2.939 2.232 C13 A1LYZ 6 A1LYZ C14 C5 C 0 1 N N N N N N 8.072 1.105 22.465 1.856 -0.265 -0.866 C14 A1LYZ 7 A1LYZ O1 O2 O 0 1 N N N N N N 8.709 -2.756 23.941 -2.741 -0.241 0.210 O1 A1LYZ 8 A1LYZ C2 C6 C 0 1 Y N N N N N 9.985 -4.741 21.236 -5.934 -0.772 0.061 C2 A1LYZ 9 A1LYZ C1 C7 C 0 1 Y N N N N N 9.899 -3.814 22.156 -5.082 0.126 0.678 C1 A1LYZ 10 A1LYZ C3 C8 C 0 1 Y N N N N N 11.092 -4.671 20.201 -7.140 -0.339 -0.455 C3 A1LYZ 11 A1LYZ C4 C9 C 0 1 Y N N N N N 11.958 -3.684 20.224 -7.497 0.997 -0.353 C4 A1LYZ 12 A1LYZ C5 C10 C 0 1 Y N N N N N 11.856 -2.601 21.295 -6.642 1.896 0.267 C5 A1LYZ 13 A1LYZ C6 C11 C 0 1 Y N N N N N 10.899 -2.662 22.190 -5.439 1.458 0.786 C6 A1LYZ 14 A1LYZ C7 C12 C 0 1 N N N N N N 8.779 -3.914 23.178 -3.764 -0.347 1.234 C7 A1LYZ 15 A1LYZ N1 N2 N 0 1 N N N N N N 7.839 -0.531 24.225 -0.499 -0.554 -0.357 N1 A1LYZ 16 A1LYZ C8 C13 C 0 1 N N N N N N 8.021 -1.682 23.387 -1.496 -0.627 0.547 C8 A1LYZ 17 A1LYZ C9 C14 C 0 1 N N S N N N 7.278 0.677 23.693 0.855 -0.974 0.010 C9 A1LYZ 18 A1LYZ C15 C15 C 0 1 N N S N N N 7.995 1.977 20.087 4.147 0.191 -1.560 C15 A1LYZ 19 A1LYZ C16 C16 C 0 1 N N N N N N 7.483 3.389 19.811 4.350 -0.596 -2.828 C16 A1LYZ 20 A1LYZ C17 C17 C 0 1 N N N N N N 7.588 1.057 18.937 5.479 0.314 -0.817 C17 A1LYZ 21 A1LYZ C18 C18 C 0 1 N N S N N N 8.389 -0.274 18.954 5.300 1.218 0.405 C18 A1LYZ 22 A1LYZ C19 C19 C 0 1 N N N N N N 9.848 0.025 18.822 4.958 2.660 -0.035 C19 A1LYZ 23 A1LYZ C20 C20 C 0 1 N N N N N N 10.405 -1.225 18.094 5.714 3.499 1.019 C20 A1LYZ 24 A1LYZ C21 C21 C 0 1 N N N N N N 8.028 -1.126 17.783 6.606 1.356 1.156 C21 A1LYZ 25 A1LYZ C22 C22 C 0 1 N N N N N N 13.570 -2.428 19.022 -8.986 2.815 -0.719 C22 A1LYZ 26 A1LYZ N3 N3 N 0 1 N N N N N N 9.241 -1.715 17.247 6.815 2.646 1.481 N3 A1LYZ 27 A1LYZ O3 O3 O 0 1 N N N N N N 9.245 1.064 22.468 1.475 0.514 -1.714 O3 A1LYZ 28 A1LYZ O4 O4 O 0 1 N N N N N N 8.393 4.066 18.999 3.744 -1.627 -3.003 O4 A1LYZ 29 A1LYZ O5 O5 O 0 1 N N N N N N 6.972 -1.319 17.344 7.353 0.439 1.425 O5 A1LYZ 30 A1LYZ O6 O6 O 0 1 N N N N N N 12.962 -3.663 19.251 -8.684 1.425 -0.860 O6 A1LYZ 31 A1LYZ H1 H1 H 0 1 N N N N N N 8.378 1.859 25.116 2.021 -2.785 0.007 H1 A1LYZ 32 A1LYZ H2 H2 H 0 1 N N N N N N 6.974 2.696 24.373 0.716 -2.749 -1.203 H2 A1LYZ 33 A1LYZ H3 H3 H 0 1 N N N N N N 6.344 1.546 21.334 3.479 -1.120 -0.030 H3 A1LYZ 34 A1LYZ H4 H4 H 0 1 N N N N N N 6.768 0.349 26.332 -0.956 -2.843 0.670 H4 A1LYZ 35 A1LYZ H5 H5 H 0 1 N N N N N N 6.055 2.092 27.951 1.123 -5.078 0.651 H5 A1LYZ 36 A1LYZ H6 H6 H 0 1 N N N N N N 7.734 2.376 27.378 -0.557 -5.228 1.221 H6 A1LYZ 37 A1LYZ H7 H7 H 0 1 N N N N N N 6.382 3.361 26.722 -0.226 -4.905 -0.498 H7 A1LYZ 38 A1LYZ H8 H8 H 0 1 N N N N N N 4.388 1.038 26.442 1.544 -3.304 2.359 H8 A1LYZ 39 A1LYZ H9 H9 H 0 1 N N N N N N 4.701 2.324 25.228 0.496 -1.867 2.427 H9 A1LYZ 40 A1LYZ H10 H10 H 0 1 N N N N N N 4.853 0.595 24.765 -0.135 -3.454 2.929 H10 A1LYZ 41 A1LYZ H11 H11 H 0 1 N N N N N N 9.272 -5.552 21.214 -5.653 -1.811 -0.022 H11 A1LYZ 42 A1LYZ H12 H12 H 0 1 N N N N N N 11.168 -5.436 19.442 -7.804 -1.041 -0.938 H12 A1LYZ 43 A1LYZ H13 H13 H 0 1 N N N N N N 12.568 -1.789 21.316 -6.918 2.938 0.347 H13 A1LYZ 44 A1LYZ H14 H14 H 0 1 N N N N N N 10.819 -1.898 22.949 -4.773 2.157 1.269 H14 A1LYZ 45 A1LYZ H15 H15 H 0 1 N N N N N N 7.823 -4.060 22.654 -3.855 -1.386 1.551 H15 A1LYZ 46 A1LYZ H16 H16 H 0 1 N N N N N N 8.969 -4.772 23.840 -3.488 0.270 2.089 H16 A1LYZ 47 A1LYZ H17 H17 H 0 1 N N N N N N 8.106 -0.572 25.188 -0.679 -0.223 -1.251 H17 A1LYZ 48 A1LYZ H18 H18 H 0 1 N N N N N N 6.229 0.516 23.404 1.044 -0.721 1.054 H18 A1LYZ 49 A1LYZ H19 H19 H 0 1 N N N N N N 9.089 1.984 20.199 3.775 1.186 -1.805 H19 A1LYZ 50 A1LYZ H21 H21 H 0 1 N N N N N N 6.558 3.800 20.187 5.037 -0.240 -3.582 H21 A1LYZ 51 A1LYZ H22 H22 H 0 1 N N N N N N 7.775 1.573 17.984 5.806 -0.674 -0.493 H22 A1LYZ 52 A1LYZ H23 H23 H 0 1 N N N N N N 6.516 0.829 19.026 6.227 0.745 -1.482 H23 A1LYZ 53 A1LYZ H24 H24 H 0 1 N N N N N N 8.192 -0.811 19.894 4.523 0.824 1.059 H24 A1LYZ 54 A1LYZ H25 H25 H 0 1 N N N N N N 10.316 0.147 19.810 5.334 2.862 -1.038 H25 A1LYZ 55 A1LYZ H26 H26 H 0 1 N N N N N N 10.011 0.934 18.225 3.884 2.840 0.020 H26 A1LYZ 56 A1LYZ H27 H27 H 0 1 N N N N N N 10.711 -1.994 18.819 6.106 4.409 0.566 H27 A1LYZ 57 A1LYZ H28 H28 H 0 1 N N N N N N 11.263 -0.957 17.460 5.053 3.746 1.850 H28 A1LYZ 58 A1LYZ H29 H29 H 0 1 N N N N N N 14.338 -2.536 18.242 -9.008 3.076 0.339 H29 A1LYZ 59 A1LYZ H30 H30 H 0 1 N N N N N N 12.812 -1.702 18.693 -8.221 3.406 -1.224 H30 A1LYZ 60 A1LYZ H31 H31 H 0 1 N N N N N N 14.039 -2.073 19.951 -9.958 3.022 -1.165 H31 A1LYZ 61 A1LYZ H32 H32 H 0 1 N N N N N N 9.301 -2.332 16.462 7.593 2.970 1.962 H32 A1LYZ 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LYZ N3 C21 SING N N 1 A1LYZ N3 C20 SING N N 2 A1LYZ O5 C21 DOUB N N 3 A1LYZ C21 C18 SING N N 4 A1LYZ C20 C19 SING N N 5 A1LYZ C19 C18 SING N N 6 A1LYZ C17 C18 SING N N 7 A1LYZ C17 C15 SING N N 8 A1LYZ O4 C16 DOUB N N 9 A1LYZ C22 O6 SING N N 10 A1LYZ O6 C4 SING N N 11 A1LYZ C16 C15 SING N N 12 A1LYZ C15 N2 SING N N 13 A1LYZ C3 C4 DOUB Y N 14 A1LYZ C3 C2 SING Y N 15 A1LYZ C4 C5 SING Y N 16 A1LYZ C2 C1 DOUB Y N 17 A1LYZ C5 C6 DOUB Y N 18 A1LYZ N2 C14 SING N N 19 A1LYZ C1 C6 SING Y N 20 A1LYZ C1 C7 SING N N 21 A1LYZ O2 C8 DOUB N N 22 A1LYZ C14 O3 DOUB N N 23 A1LYZ C14 C9 SING N N 24 A1LYZ C7 O1 SING N N 25 A1LYZ C8 O1 SING N N 26 A1LYZ C8 N1 SING N N 27 A1LYZ C9 N1 SING N N 28 A1LYZ C9 C10 SING N N 29 A1LYZ C10 C11 SING N N 30 A1LYZ C13 C11 SING N N 31 A1LYZ C11 C12 SING N N 32 A1LYZ C10 H1 SING N N 33 A1LYZ C10 H2 SING N N 34 A1LYZ N2 H3 SING N N 35 A1LYZ C11 H4 SING N N 36 A1LYZ C12 H5 SING N N 37 A1LYZ C12 H6 SING N N 38 A1LYZ C12 H7 SING N N 39 A1LYZ C13 H8 SING N N 40 A1LYZ C13 H9 SING N N 41 A1LYZ C13 H10 SING N N 42 A1LYZ C2 H11 SING N N 43 A1LYZ C3 H12 SING N N 44 A1LYZ C5 H13 SING N N 45 A1LYZ C6 H14 SING N N 46 A1LYZ C7 H15 SING N N 47 A1LYZ C7 H16 SING N N 48 A1LYZ N1 H17 SING N N 49 A1LYZ C9 H18 SING N N 50 A1LYZ C15 H19 SING N N 51 A1LYZ C16 H21 SING N N 52 A1LYZ C17 H22 SING N N 53 A1LYZ C17 H23 SING N N 54 A1LYZ C18 H24 SING N N 55 A1LYZ C19 H25 SING N N 56 A1LYZ C19 H26 SING N N 57 A1LYZ C20 H27 SING N N 58 A1LYZ C20 H28 SING N N 59 A1LYZ C22 H29 SING N N 60 A1LYZ C22 H30 SING N N 61 A1LYZ C22 H31 SING N N 62 A1LYZ N3 H32 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LYZ InChI InChI 1.06 "InChI=1S/C22H31N3O6/c1-14(2)10-19(21(28)24-17(12-26)11-16-8-9-23-20(16)27)25-22(29)31-13-15-4-6-18(30-3)7-5-15/h4-7,12,14,16-17,19H,8-11,13H2,1-3H3,(H,23,27)(H,24,28)(H,25,29)/t16-,17-,19-/m0/s1" A1LYZ InChIKey InChI 1.06 HCIPLFOANXSFSY-LNLFQRSKSA-N A1LYZ SMILES_CANONICAL CACTVS 3.385 "COc1ccc(COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C=O)cc1" A1LYZ SMILES CACTVS 3.385 "COc1ccc(COC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)C=O)cc1" A1LYZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=O)NC(=O)OCc2ccc(cc2)OC" A1LYZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=O)NC(=O)OCc2ccc(cc2)OC" # _pdbx_chem_comp_identifier.comp_id A1LYZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4-methoxyphenyl)methyl ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LYZ "Create component" 2024-03-11 PDBJ A1LYZ "Initial release" 2024-09-04 RCSB #