data_A1LZ5 # _chem_comp.id A1LZ5 _chem_comp.name "~{N}-[1-(1,2-dihydroacenaphthylen-5-yl)cyclopropyl]-2-methyl-5-(4-methylpiperazin-1-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H31 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-03 _chem_comp.pdbx_modified_date 2024-11-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.565 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LZ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LZ5 C02 C1 C 0 1 N N N N N N 49.538 -7.355 41.501 0.255 -0.744 -0.828 C02 A1LZ5 1 A1LZ5 C03 C2 C 0 1 Y N N N N N 49.850 -7.671 42.923 -1.034 -1.242 -0.302 C03 A1LZ5 2 A1LZ5 C04 C3 C 0 1 Y N N N N N 50.022 -8.965 43.354 -2.096 -0.360 -0.103 C04 A1LZ5 3 A1LZ5 C05 C4 C 0 1 Y N N N N N 50.284 -9.349 44.673 -3.302 -0.835 0.391 C05 A1LZ5 4 A1LZ5 C07 C5 C 0 1 N N N N N N 50.253 -11.195 46.398 -4.701 0.763 -0.646 C07 A1LZ5 5 A1LZ5 C08 C6 C 0 1 N N N N N N 50.519 -12.724 46.641 -5.818 1.770 -0.364 C08 A1LZ5 6 A1LZ5 C10 C7 C 0 1 N N N N N N 50.234 -14.963 45.926 -8.115 1.985 0.373 C10 A1LZ5 7 A1LZ5 C11 C8 C 0 1 N N N N N N 50.392 -13.228 44.345 -6.661 0.343 1.400 C11 A1LZ5 8 A1LZ5 C12 C9 C 0 1 N N N N N N 50.164 -11.750 43.970 -5.544 -0.665 1.118 C12 A1LZ5 9 A1LZ5 C13 C10 C 0 1 Y N N N N N 50.305 -8.274 45.655 -3.449 -2.185 0.685 C13 A1LZ5 10 A1LZ5 C14 C11 C 0 1 Y N N N N N 50.088 -6.934 45.223 -2.396 -3.059 0.488 C14 A1LZ5 11 A1LZ5 C15 C12 C 0 1 Y N N N N N 49.834 -6.638 43.836 -1.194 -2.597 -0.009 C15 A1LZ5 12 A1LZ5 C16 C13 C 0 1 N N N N N N 49.540 -5.227 43.327 -0.052 -3.556 -0.228 C16 A1LZ5 13 A1LZ5 C18 C14 C 0 1 N N N N N N 47.978 -7.442 39.525 1.645 1.030 -1.754 C18 A1LZ5 14 A1LZ5 C19 C15 C 0 1 N N N N N N 47.700 -5.975 39.330 1.709 2.493 -2.197 C19 A1LZ5 15 A1LZ5 C20 C16 C 0 1 N N N N N N 46.528 -7.048 39.274 1.715 1.376 -3.243 C20 A1LZ5 16 A1LZ5 C21 C17 C 0 1 Y N N N N N 48.715 -8.009 38.426 2.878 0.441 -1.117 C21 A1LZ5 17 A1LZ5 C22 C18 C 0 1 Y N N N N N 48.860 -9.242 37.833 3.365 0.947 0.099 C22 A1LZ5 18 A1LZ5 C23 C19 C 0 1 Y N N N N N 48.145 -10.376 38.108 2.776 2.004 0.810 C23 A1LZ5 19 A1LZ5 C24 C20 C 0 1 Y N N N N N 48.332 -11.616 37.377 3.345 2.406 1.984 C24 A1LZ5 20 A1LZ5 C25 C21 C 0 1 Y N N N N N 49.264 -11.905 36.306 4.493 1.802 2.502 C25 A1LZ5 21 A1LZ5 C26 C22 C 0 1 Y N N N N N 49.927 -10.695 36.182 5.090 0.775 1.838 C26 A1LZ5 22 A1LZ5 C27 C23 C 0 1 N N N N N N 50.982 -10.735 35.064 6.302 -0.089 2.089 C27 A1LZ5 23 A1LZ5 C28 C24 C 0 1 N N N N N N 51.432 -9.216 35.184 6.364 -1.062 0.891 C28 A1LZ5 24 A1LZ5 C29 C25 C 0 1 Y N N N N N 49.748 -9.551 36.812 4.520 0.354 0.640 C29 A1LZ5 25 A1LZ5 C30 C26 C 0 1 Y N N N N N 50.693 -8.557 36.293 5.185 -0.699 0.022 C30 A1LZ5 26 A1LZ5 C31 C27 C 0 1 Y N N N N N 50.553 -7.404 36.904 4.686 -1.166 -1.156 C31 A1LZ5 27 A1LZ5 C32 C28 C 0 1 Y N N N N N 49.616 -7.074 37.944 3.537 -0.597 -1.710 C32 A1LZ5 28 A1LZ5 N06 N1 N 0 1 N N N N N N 50.532 -10.730 44.995 -4.369 0.045 0.593 N06 A1LZ5 29 A1LZ5 N09 N2 N 0 1 N N N N N N 49.897 -13.564 45.661 -6.993 1.061 0.161 N09 A1LZ5 30 A1LZ5 N17 N3 N 0 1 N N N N N N 48.394 -7.803 40.873 0.368 0.537 -1.233 N17 A1LZ5 31 A1LZ5 O01 O1 O 0 1 N N N N N N 50.247 -6.575 40.869 1.214 -1.488 -0.890 O01 A1LZ5 32 A1LZ5 H1 H1 H 0 1 N N N N N N 49.949 -9.748 42.614 -1.980 0.689 -0.332 H1 A1LZ5 33 A1LZ5 H2 H2 H 0 1 N N N N N N 50.893 -10.621 47.084 -5.035 0.051 -1.400 H2 A1LZ5 34 A1LZ5 H3 H3 H 0 1 N N N N N N 49.196 -10.990 46.625 -3.819 1.290 -1.009 H3 A1LZ5 35 A1LZ5 H4 H4 H 0 1 N N N N N N 50.128 -12.994 47.633 -5.474 2.498 0.370 H4 A1LZ5 36 A1LZ5 H5 H5 H 0 1 N N N N N N 51.605 -12.899 46.614 -6.086 2.284 -1.288 H5 A1LZ5 37 A1LZ5 H6 H6 H 0 1 N N N N N N 49.868 -15.246 46.924 -7.845 2.714 1.138 H6 A1LZ5 38 A1LZ5 H7 H7 H 0 1 N N N N N N 49.762 -15.604 45.167 -8.340 2.504 -0.559 H7 A1LZ5 39 A1LZ5 H8 H8 H 0 1 N N N N N N 51.326 -15.091 45.886 -8.991 1.425 0.698 H8 A1LZ5 40 A1LZ5 H9 H9 H 0 1 N N N N N N 49.877 -13.860 43.606 -7.543 -0.184 1.762 H9 A1LZ5 41 A1LZ5 H10 H10 H 0 1 N N N N N N 51.472 -13.434 44.315 -6.327 1.055 2.155 H10 A1LZ5 42 A1LZ5 H11 H11 H 0 1 N N N N N N 50.755 -11.541 43.066 -5.276 -1.178 2.042 H11 A1LZ5 43 A1LZ5 H12 H12 H 0 1 N N N N N N 49.094 -11.625 43.746 -5.887 -1.393 0.384 H12 A1LZ5 44 A1LZ5 H13 H13 H 0 1 N N N N N N 50.483 -8.490 46.698 -4.389 -2.553 1.070 H13 A1LZ5 45 A1LZ5 H14 H14 H 0 1 N N N N N N 50.114 -6.130 45.944 -2.516 -4.107 0.719 H14 A1LZ5 46 A1LZ5 H15 H15 H 0 1 N N N N N N 48.456 -5.043 43.360 0.617 -3.527 0.632 H15 A1LZ5 47 A1LZ5 H16 H16 H 0 1 N N N N N N 50.055 -4.493 43.964 -0.444 -4.566 -0.351 H16 A1LZ5 48 A1LZ5 H17 H17 H 0 1 N N N N N N 49.897 -5.129 42.291 0.497 -3.267 -1.125 H17 A1LZ5 49 A1LZ5 H18 H18 H 0 1 N N N N N N 48.029 -5.467 38.412 0.801 3.088 -2.101 H18 A1LZ5 50 A1LZ5 H19 H19 H 0 1 N N N N N N 47.774 -5.280 40.180 2.643 3.029 -2.029 H19 A1LZ5 51 A1LZ5 H20 H20 H 0 1 N N N N N N 45.788 -7.106 40.086 2.652 1.177 -3.762 H20 A1LZ5 52 A1LZ5 H21 H21 H 0 1 N N N N N N 46.043 -7.292 38.317 0.810 1.236 -3.834 H21 A1LZ5 53 A1LZ5 H22 H22 H 0 1 N N N N N N 47.412 -10.347 38.901 1.888 2.491 0.435 H22 A1LZ5 54 A1LZ5 H23 H23 H 0 1 N N N N N N 47.690 -12.433 37.671 2.891 3.219 2.531 H23 A1LZ5 55 A1LZ5 H24 H24 H 0 1 N N N N N N 49.405 -12.821 35.751 4.910 2.153 3.435 H24 A1LZ5 56 A1LZ5 H25 H25 H 0 1 N N N N N N 50.548 -10.971 34.081 7.202 0.525 2.125 H25 A1LZ5 57 A1LZ5 H26 H26 H 0 1 N N N N N N 52.512 -9.170 35.387 7.295 -0.924 0.342 H26 A1LZ5 58 A1LZ5 H27 H27 H 0 1 N N N N N N 51.217 -6.613 36.590 5.178 -1.983 -1.662 H27 A1LZ5 59 A1LZ5 H28 H28 H 0 1 N N N N N N 49.615 -6.076 38.358 3.162 -0.986 -2.645 H28 A1LZ5 60 A1LZ5 H30 H30 H 0 1 N N N N N N 47.803 -8.426 41.385 -0.396 1.132 -1.179 H30 A1LZ5 61 A1LZ5 H31 H31 H 0 1 N N N N N N 51.801 -11.437 35.281 6.184 -0.643 3.020 H31 A1LZ5 62 A1LZ5 H32 H32 H 0 1 N N N N N N 51.214 -8.695 34.240 6.277 -2.092 1.236 H32 A1LZ5 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LZ5 C27 C28 SING N N 1 A1LZ5 C27 C26 SING N N 2 A1LZ5 C28 C30 SING N N 3 A1LZ5 C26 C25 DOUB Y N 4 A1LZ5 C26 C29 SING Y N 5 A1LZ5 C30 C29 DOUB Y N 6 A1LZ5 C30 C31 SING Y N 7 A1LZ5 C25 C24 SING Y N 8 A1LZ5 C29 C22 SING Y N 9 A1LZ5 C31 C32 DOUB Y N 10 A1LZ5 C24 C23 DOUB Y N 11 A1LZ5 C22 C23 SING Y N 12 A1LZ5 C22 C21 DOUB Y N 13 A1LZ5 C32 C21 SING Y N 14 A1LZ5 C21 C18 SING N N 15 A1LZ5 C20 C19 SING N N 16 A1LZ5 C20 C18 SING N N 17 A1LZ5 C19 C18 SING N N 18 A1LZ5 C18 N17 SING N N 19 A1LZ5 O01 C02 DOUB N N 20 A1LZ5 N17 C02 SING N N 21 A1LZ5 C02 C03 SING N N 22 A1LZ5 C03 C04 DOUB Y N 23 A1LZ5 C03 C15 SING Y N 24 A1LZ5 C16 C15 SING N N 25 A1LZ5 C04 C05 SING Y N 26 A1LZ5 C15 C14 DOUB Y N 27 A1LZ5 C12 C11 SING N N 28 A1LZ5 C12 N06 SING N N 29 A1LZ5 C11 N09 SING N N 30 A1LZ5 C05 N06 SING N N 31 A1LZ5 C05 C13 DOUB Y N 32 A1LZ5 N06 C07 SING N N 33 A1LZ5 C14 C13 SING Y N 34 A1LZ5 N09 C10 SING N N 35 A1LZ5 N09 C08 SING N N 36 A1LZ5 C07 C08 SING N N 37 A1LZ5 C04 H1 SING N N 38 A1LZ5 C07 H2 SING N N 39 A1LZ5 C07 H3 SING N N 40 A1LZ5 C08 H4 SING N N 41 A1LZ5 C08 H5 SING N N 42 A1LZ5 C10 H6 SING N N 43 A1LZ5 C10 H7 SING N N 44 A1LZ5 C10 H8 SING N N 45 A1LZ5 C11 H9 SING N N 46 A1LZ5 C11 H10 SING N N 47 A1LZ5 C12 H11 SING N N 48 A1LZ5 C12 H12 SING N N 49 A1LZ5 C13 H13 SING N N 50 A1LZ5 C14 H14 SING N N 51 A1LZ5 C16 H15 SING N N 52 A1LZ5 C16 H16 SING N N 53 A1LZ5 C16 H17 SING N N 54 A1LZ5 C19 H18 SING N N 55 A1LZ5 C19 H19 SING N N 56 A1LZ5 C20 H20 SING N N 57 A1LZ5 C20 H21 SING N N 58 A1LZ5 C23 H22 SING N N 59 A1LZ5 C24 H23 SING N N 60 A1LZ5 C25 H24 SING N N 61 A1LZ5 C27 H25 SING N N 62 A1LZ5 C28 H26 SING N N 63 A1LZ5 C31 H27 SING N N 64 A1LZ5 C32 H28 SING N N 65 A1LZ5 N17 H30 SING N N 66 A1LZ5 C27 H31 SING N N 67 A1LZ5 C28 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LZ5 InChI InChI 1.06 "InChI=1S/C28H31N3O/c1-19-6-10-22(31-16-14-30(2)15-17-31)18-24(19)27(32)29-28(12-13-28)25-11-9-21-8-7-20-4-3-5-23(25)26(20)21/h3-6,9-11,18H,7-8,12-17H2,1-2H3,(H,29,32)" A1LZ5 InChIKey InChI 1.06 OZFSYRYXVDORMK-UHFFFAOYSA-N A1LZ5 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(C)c(c2)C(=O)NC3(CC3)c4ccc5CCc6cccc4c56" A1LZ5 SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(C)c(c2)C(=O)NC3(CC3)c4ccc5CCc6cccc4c56" A1LZ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC2(CC2)c3ccc4c5c3cccc5CC4)N6CCN(CC6)C" A1LZ5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC2(CC2)c3ccc4c5c3cccc5CC4)N6CCN(CC6)C" # _pdbx_chem_comp_identifier.comp_id A1LZ5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[1-(1,2-dihydroacenaphthylen-5-yl)cyclopropyl]-2-methyl-5-(4-methylpiperazin-1-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LZ5 "Create component" 2024-04-03 PDBJ A1LZ5 "Initial release" 2024-12-04 RCSB #