data_A1LZH # _chem_comp.id A1LZH _chem_comp.name deoxysordaricin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-22 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LZH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YI8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LZH C01 C1 C 0 1 N N N N N N -36.558 -19.816 -24.432 -0.812 2.653 0.633 C01 A1LZH 1 A1LZH C02 C2 C 0 1 N N R N N N -35.626 -19.922 -23.208 0.011 1.363 0.752 C02 A1LZH 2 A1LZH C03 C3 C 0 1 N N N N N N -36.153 -18.883 -22.200 1.482 1.625 0.509 C03 A1LZH 3 A1LZH C04 C4 C 0 1 N N R N N N -35.313 -18.818 -20.928 2.307 0.387 0.684 C04 A1LZH 4 A1LZH C05 C5 C 0 1 N N R N N N -33.832 -18.780 -21.220 1.708 -0.751 -0.190 C05 A1LZH 5 A1LZH C06 C6 C 0 1 N N N N N N -33.348 -18.635 -19.754 2.730 -1.864 0.123 C06 A1LZH 6 A1LZH C07 C7 C 0 1 N N N N N N -34.254 -17.513 -19.211 4.080 -1.107 -0.053 C07 A1LZH 7 A1LZH C08 C8 C 0 1 N N R N N N -35.528 -17.563 -20.065 3.772 0.385 0.256 C08 A1LZH 8 A1LZH C09 C9 C 0 1 N N N N N N -35.688 -16.253 -20.831 4.000 1.240 -0.987 C09 A1LZH 9 A1LZH C10 C10 C 0 1 N N R N N N -35.494 -21.353 -22.694 -0.283 0.600 2.079 C10 A1LZH 10 A1LZH C11 C11 C 0 1 N N N N N N -34.420 -21.225 -21.612 0.315 -0.823 1.860 C11 A1LZH 11 A1LZH C12 C12 C 0 1 N N S N N N -33.562 -20.039 -22.070 0.294 -1.009 0.315 C12 A1LZH 12 A1LZH C13 C13 C 0 1 N N N N N N -32.080 -20.429 -22.072 -0.268 -2.348 -0.123 C13 A1LZH 13 A1LZH C15 C14 C 0 1 N N S N N N -34.127 -19.800 -23.495 -0.569 0.217 -0.143 C15 A1LZH 14 A1LZH C16 C15 C 0 1 N N N N N N -33.633 -18.532 -24.203 -0.638 0.487 -1.624 C16 A1LZH 15 A1LZH C19 C16 C 0 1 N N N N N N -33.892 -21.043 -24.321 -1.929 0.057 0.555 C19 A1LZH 16 A1LZH C20 C17 C 0 1 N N N N N N -32.811 -21.214 -25.391 -3.227 -0.306 -0.123 C20 A1LZH 17 A1LZH C21 C18 C 0 1 N N N N N N -32.283 -22.646 -25.464 -4.241 -0.763 0.928 C21 A1LZH 18 A1LZH C22 C19 C 0 1 N N N N N N -33.440 -20.841 -26.713 -3.775 0.915 -0.864 C22 A1LZH 19 A1LZH C23 C20 C 0 1 N N N N N N -34.761 -22.008 -23.854 -1.783 0.299 1.846 C23 A1LZH 20 A1LZH O14 O1 O 0 1 N N N N N N -31.262 -19.752 -21.501 -1.302 -2.394 -0.746 O14 A1LZH 21 A1LZH O17 O2 O 0 1 N N N N N N -34.375 -17.666 -24.628 -0.257 1.545 -2.064 O17 A1LZH 22 A1LZH O18 O3 O 0 1 N N N N N N -32.406 -18.363 -24.360 -1.124 -0.449 -2.454 O18 A1LZH 23 A1LZH H013 H1 H 0 0 N N N N N N -36.239 -20.536 -25.200 -1.838 2.460 0.948 H013 A1LZH 24 A1LZH H012 H2 H 0 0 N N N N N N -37.591 -20.040 -24.127 -0.375 3.422 1.270 H012 A1LZH 25 A1LZH H011 H3 H 0 0 N N N N N N -36.509 -18.797 -24.842 -0.807 2.993 -0.402 H011 A1LZH 26 A1LZH H031 H4 H 0 0 N N N N N N -37.185 -19.149 -21.927 1.596 2.026 -0.499 H031 A1LZH 27 A1LZH H032 H5 H 0 0 N N N N N N -36.144 -17.893 -22.678 1.823 2.387 1.218 H032 A1LZH 28 A1LZH H041 H6 H 0 0 N N N N N N -35.532 -19.705 -20.315 2.304 0.115 1.745 H041 A1LZH 29 A1LZH H051 H7 H 0 0 N N N N N N -33.575 -17.876 -21.792 1.735 -0.517 -1.260 H051 A1LZH 30 A1LZH H061 H8 H 0 0 N N N N N N -33.494 -19.570 -19.193 2.614 -2.215 1.144 H061 A1LZH 31 A1LZH H062 H9 H 0 0 N N N N N N -32.288 -18.344 -19.713 2.646 -2.674 -0.596 H062 A1LZH 32 A1LZH H071 H10 H 0 0 N N N N N N -34.494 -17.691 -18.152 4.817 -1.490 0.649 H071 A1LZH 33 A1LZH H072 H11 H 0 0 N N N N N N -33.760 -16.536 -19.315 4.435 -1.210 -1.077 H072 A1LZH 34 A1LZH H081 H12 H 0 0 N N N N N N -36.400 -17.715 -19.412 4.399 0.732 1.078 H081 A1LZH 35 A1LZH H091 H13 H 0 0 N N N N N N -36.602 -16.294 -21.441 3.705 2.269 -0.779 H091 A1LZH 36 A1LZH H092 H14 H 0 0 N N N N N N -35.760 -15.418 -20.118 5.055 1.212 -1.259 H092 A1LZH 37 A1LZH H093 H15 H 0 0 N N N N N N -34.817 -16.102 -21.485 3.402 0.850 -1.811 H093 A1LZH 38 A1LZH H101 H16 H 0 0 N N N N N N -36.431 -21.838 -22.382 -0.029 1.101 3.009 H101 A1LZH 39 A1LZH H112 H17 H 0 0 N N N N N N -34.876 -21.021 -20.632 1.286 -0.954 2.301 H112 A1LZH 40 A1LZH H111 H18 H 0 0 N N N N N N -33.816 -22.143 -21.551 -0.367 -1.565 2.316 H111 A1LZH 41 A1LZH H131 H19 H 0 0 N N N N N N -31.764 -21.322 -22.592 0.257 -3.260 0.121 H131 A1LZH 42 A1LZH H201 H20 H 0 0 N N N N N N -31.977 -20.530 -25.176 -3.051 -1.114 -0.834 H201 A1LZH 43 A1LZH H213 H21 H 0 0 N N N N N N -31.825 -22.918 -24.502 -4.416 0.045 1.639 H213 A1LZH 44 A1LZH H211 H22 H 0 0 N N N N N N -33.114 -23.333 -25.681 -5.178 -1.026 0.438 H211 A1LZH 45 A1LZH H212 H23 H 0 0 N N N N N N -31.529 -22.719 -26.262 -3.850 -1.633 1.456 H212 A1LZH 46 A1LZH H223 H24 H 0 0 N N N N N N -33.820 -19.810 -26.661 -3.891 1.742 -0.164 H223 A1LZH 47 A1LZH H222 H25 H 0 0 N N N N N N -32.686 -20.914 -27.511 -3.081 1.202 -1.654 H222 A1LZH 48 A1LZH H221 H26 H 0 0 N N N N N N -34.271 -21.528 -26.930 -4.743 0.670 -1.301 H221 A1LZH 49 A1LZH H231 H27 H 0 0 N N N N N N -34.892 -23.012 -24.231 -2.553 0.289 2.597 H231 A1LZH 50 A1LZH H1 H28 H 0 1 N N N N N N -32.254 -17.540 -24.810 -1.148 -0.230 -3.396 H1 A1LZH 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LZH C02 C01 SING N N 1 A1LZH C04 C03 SING N N 2 A1LZH C05 C04 SING N N 3 A1LZH C06 C05 SING N N 4 A1LZH C07 C06 SING N N 5 A1LZH C08 C07 SING N N 6 A1LZH C09 C08 SING N N 7 A1LZH C03 C02 SING N N 8 A1LZH C10 C02 SING N N 9 A1LZH C11 C10 SING N N 10 A1LZH C12 C11 SING N N 11 A1LZH O14 C13 DOUB N N 12 A1LZH C13 C12 SING N N 13 A1LZH C15 C12 SING N N 14 A1LZH O17 C16 DOUB N N 15 A1LZH O18 C16 SING N N 16 A1LZH C16 C15 SING N N 17 A1LZH C19 C15 SING N N 18 A1LZH C21 C20 SING N N 19 A1LZH C22 C20 SING N N 20 A1LZH C20 C19 SING N N 21 A1LZH C23 C19 DOUB N N 22 A1LZH C02 C15 SING N N 23 A1LZH C04 C08 SING N N 24 A1LZH C05 C12 SING N N 25 A1LZH C10 C23 SING N N 26 A1LZH C01 H013 SING N N 27 A1LZH C01 H012 SING N N 28 A1LZH C01 H011 SING N N 29 A1LZH C03 H031 SING N N 30 A1LZH C03 H032 SING N N 31 A1LZH C04 H041 SING N N 32 A1LZH C05 H051 SING N N 33 A1LZH C06 H061 SING N N 34 A1LZH C06 H062 SING N N 35 A1LZH C07 H071 SING N N 36 A1LZH C07 H072 SING N N 37 A1LZH C08 H081 SING N N 38 A1LZH C09 H091 SING N N 39 A1LZH C09 H092 SING N N 40 A1LZH C09 H093 SING N N 41 A1LZH C10 H101 SING N N 42 A1LZH C11 H112 SING N N 43 A1LZH C11 H111 SING N N 44 A1LZH C13 H131 SING N N 45 A1LZH C20 H201 SING N N 46 A1LZH C21 H213 SING N N 47 A1LZH C21 H211 SING N N 48 A1LZH C21 H212 SING N N 49 A1LZH C22 H223 SING N N 50 A1LZH C22 H222 SING N N 51 A1LZH C22 H221 SING N N 52 A1LZH C23 H231 SING N N 53 A1LZH O18 H1 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LZH InChI InChI 1.06 "InChI=1S/C20H28O3/c1-11(2)16-7-13-8-19(10-21)15-6-5-12(3)14(15)9-18(13,4)20(16,19)17(22)23/h7,10-15H,5-6,8-9H2,1-4H3,(H,22,23)/t12-,13+,14-,15-,18-,19+,20-/m1/s1" A1LZH InChIKey InChI 1.06 PREPDMQKKFKALX-JUZOJGAKSA-N A1LZH SMILES_CANONICAL CACTVS 3.385 "CC(C)C1=C[C@H]2C[C@]3(C=O)[C@@H]4CC[C@@H](C)[C@H]4C[C@@]2(C)[C@]13C(O)=O" A1LZH SMILES CACTVS 3.385 "CC(C)C1=C[CH]2C[C]3(C=O)[CH]4CC[CH](C)[CH]4C[C]2(C)[C]13C(O)=O" A1LZH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC[C@@H]2[C@@H]1C[C@@]3([C@@H]4C[C@]2([C@]3(C(=C4)C(C)C)C(=O)O)C=O)C" A1LZH SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC2C1CC3(C4CC2(C3(C(=C4)C(C)C)C(=O)O)C=O)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LZH "Create component" 2024-03-22 PDBJ A1LZH "Modify PCM" 2024-09-27 PDBE A1LZH "Initial release" 2025-10-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1LZH _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #