data_A1LZK # _chem_comp.id A1LZK _chem_comp.name "(5R)-5-methyl-5-[[(1R,2R,5R)-2-methyl-5-(3-oxidanylideneprop-1-en-2-yl)cyclopentyl]methyl]-2-propan-2-yl-cyclopenta-1,3-diene-1-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-26 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.435 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LZK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YI8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LZK C01 C1 C 0 1 N N N N N N -16.390 -10.785 -36.829 0.098 -0.063 1.981 C01 A1LZK 1 A1LZK C02 C2 C 0 1 N N R N N N -17.235 -10.105 -35.737 0.499 0.003 0.506 C02 A1LZK 2 A1LZK C03 C3 C 0 1 N N N N N N -18.145 -11.110 -35.044 1.949 -0.395 0.337 C03 A1LZK 3 A1LZK C04 C4 C 0 1 N N N N N N -17.692 -11.942 -34.070 2.529 -1.645 0.667 C04 A1LZK 4 A1LZK C07 C5 C 0 1 N N N N N N -19.356 -11.034 -35.650 2.583 0.677 -0.191 C07 A1LZK 5 A1LZK C08 C6 C 0 1 N N N N N N -20.492 -12.027 -35.722 4.051 0.729 -0.527 C08 A1LZK 6 A1LZK C09 C7 C 0 1 N N N N N N -21.408 -11.716 -36.899 4.222 1.005 -2.022 C09 A1LZK 7 A1LZK C10 C8 C 0 1 N N N N N N -19.986 -13.458 -35.815 4.720 1.844 0.278 C10 A1LZK 8 A1LZK C11 C9 C 0 1 N N N N N N -19.478 -9.773 -36.297 1.645 1.774 -0.388 C11 A1LZK 9 A1LZK C12 C10 C 0 1 N N N N N N -18.259 -9.188 -36.351 0.420 1.427 0.004 C12 A1LZK 10 A1LZK C13 C11 C 0 1 N N N N N N -16.299 -9.356 -34.752 -0.403 -0.908 -0.330 C13 A1LZK 11 A1LZK C14 C12 C 0 1 N N R N N N -16.604 -8.211 -33.776 -1.868 -0.589 -0.031 C14 A1LZK 12 A1LZK C15 C13 C 0 1 N N R N N N -17.753 -8.262 -32.735 -2.250 0.765 -0.654 C15 A1LZK 13 A1LZK C16 C14 C 0 1 N N N N N N -19.170 -8.309 -33.256 -2.735 1.708 0.417 C16 A1LZK 14 A1LZK C17 C15 C 0 1 N N N N N N -20.020 -9.245 -32.713 -3.674 1.238 1.435 C17 A1LZK 15 A1LZK C18 C16 C 0 1 N N N N N N -19.610 -7.464 -34.186 -2.307 2.973 0.436 C18 A1LZK 16 A1LZK C19 C17 C 0 1 N N N N N N -17.438 -7.106 -31.767 -3.384 0.482 -1.661 C19 A1LZK 17 A1LZK C20 C18 C 0 1 N N N N N N -15.957 -6.805 -31.942 -3.201 -1.011 -2.030 C20 A1LZK 18 A1LZK C21 C19 C 0 1 N N R N N N -15.426 -7.952 -32.798 -2.783 -1.647 -0.681 C21 A1LZK 19 A1LZK C22 C20 C 0 1 N N N N N N -15.042 -9.162 -31.962 -2.013 -2.948 -0.918 C22 A1LZK 20 A1LZK O05 O1 O 0 1 N N N N N N -18.442 -12.317 -33.180 1.765 -2.627 1.190 O05 A1LZK 21 A1LZK O06 O2 O 0 1 N N N N N N -16.524 -12.321 -34.107 3.716 -1.834 0.479 O06 A1LZK 22 A1LZK H1 H1 H 0 1 N N N N N N -15.649 -11.449 -36.360 0.822 0.490 2.579 H1 A1LZK 23 A1LZK H2 H2 H 0 1 N N N N N N -17.046 -11.374 -37.487 -0.891 0.377 2.109 H2 A1LZK 24 A1LZK H3 H3 H 0 1 N N N N N N -15.870 -10.018 -37.422 0.078 -1.104 2.306 H3 A1LZK 25 A1LZK H6 H6 H 0 1 N N N N N N -21.084 -11.936 -34.799 4.514 -0.226 -0.279 H6 A1LZK 26 A1LZK H7 H7 H 0 1 N N N N N N -21.767 -10.679 -36.821 5.284 1.043 -2.266 H7 A1LZK 27 A1LZK H8 H8 H 0 1 N N N N N N -20.852 -11.841 -37.840 3.745 0.211 -2.596 H8 A1LZK 28 A1LZK H9 H9 H 0 1 N N N N N N -22.267 -12.403 -36.887 3.758 1.960 -2.270 H9 A1LZK 29 A1LZK H10 H10 H 0 1 N N N N N N -19.326 -13.670 -34.961 4.598 1.647 1.343 H10 A1LZK 30 A1LZK H11 H11 H 0 1 N N N N N N -20.840 -14.151 -35.800 5.781 1.882 0.034 H11 A1LZK 31 A1LZK H12 H12 H 0 1 N N N N N N -19.425 -13.588 -36.752 4.256 2.799 0.030 H12 A1LZK 32 A1LZK H13 H13 H 0 1 N N N N N N -20.394 -9.351 -36.682 1.907 2.739 -0.796 H13 A1LZK 33 A1LZK H15 H15 H 0 1 N N N N N N -18.053 -8.214 -36.770 -0.464 2.046 -0.031 H15 A1LZK 34 A1LZK H17 H17 H 0 1 N N N N N N -15.891 -10.152 -34.112 -0.203 -0.744 -1.389 H17 A1LZK 35 A1LZK H18 H18 H 0 1 N N N N N N -15.500 -8.956 -35.393 -0.199 -1.949 -0.079 H18 A1LZK 36 A1LZK H19 H19 H 0 1 N N N N N N -16.742 -7.296 -34.371 -2.033 -0.564 1.046 H19 A1LZK 37 A1LZK H20 H20 H 0 1 N N N N N N -17.602 -9.189 -32.162 -1.391 1.195 -1.170 H20 A1LZK 38 A1LZK H21 H21 H 0 1 N N N N N N -19.617 -9.882 -31.939 -4.021 1.914 2.203 H21 A1LZK 39 A1LZK H24 H24 H 0 1 N N N N N N -20.637 -7.512 -34.517 -2.634 3.641 1.219 H24 A1LZK 40 A1LZK H25 H25 H 0 1 N N N N N N -18.940 -6.731 -34.610 -1.635 3.327 -0.331 H25 A1LZK 41 A1LZK H26 H26 H 0 1 N N N N N N -18.040 -6.221 -32.020 -4.357 0.644 -1.197 H26 A1LZK 42 A1LZK H27 H27 H 0 1 N N N N N N -17.647 -7.408 -30.730 -3.275 1.112 -2.545 H27 A1LZK 43 A1LZK H28 H28 H 0 1 N N N N N N -15.448 -6.781 -30.967 -4.139 -1.439 -2.385 H28 A1LZK 44 A1LZK H29 H29 H 0 1 N N N N N N -15.815 -5.842 -32.453 -2.416 -1.131 -2.776 H29 A1LZK 45 A1LZK H30 H30 H 0 1 N N N N N N -14.552 -7.608 -33.370 -3.658 -1.831 -0.057 H30 A1LZK 46 A1LZK H31 H31 H 0 1 N N N N N N -14.205 -8.899 -31.299 -1.564 -3.280 0.018 H31 A1LZK 47 A1LZK H32 H32 H 0 1 N N N N N N -15.904 -9.478 -31.357 -2.697 -3.713 -1.285 H32 A1LZK 48 A1LZK H33 H33 H 0 1 N N N N N N -14.739 -9.985 -32.626 -1.230 -2.777 -1.656 H33 A1LZK 49 A1LZK H34 H34 H 0 1 N N N N N N -17.972 -12.899 -32.594 2.248 -3.442 1.383 H34 A1LZK 50 A1LZK O23 O23 O 0 1 N N N N N N -21.291 -9.439 -33.052 -4.062 0.089 1.418 O23 A1LZK 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LZK C09 C08 SING N N 1 A1LZK C01 C02 SING N N 2 A1LZK C12 C11 DOUB N N 3 A1LZK C12 C02 SING N N 4 A1LZK C11 C07 SING N N 5 A1LZK C10 C08 SING N N 6 A1LZK C02 C03 SING N N 7 A1LZK C02 C13 SING N N 8 A1LZK C08 C07 SING N N 9 A1LZK C07 C03 DOUB N N 10 A1LZK C03 C04 SING N N 11 A1LZK C13 C14 SING N N 12 A1LZK C18 C16 DOUB N N 13 A1LZK O06 C04 DOUB N N 14 A1LZK C04 O05 SING N N 15 A1LZK C14 C21 SING N N 16 A1LZK C14 C15 SING N N 17 A1LZK C16 C15 SING N N 18 A1LZK C16 C17 SING N N 19 A1LZK C21 C22 SING N N 20 A1LZK C21 C20 SING N N 21 A1LZK C15 C19 SING N N 22 A1LZK C20 C19 SING N N 23 A1LZK C01 H1 SING N N 24 A1LZK C01 H2 SING N N 25 A1LZK C01 H3 SING N N 26 A1LZK C08 H6 SING N N 27 A1LZK C09 H7 SING N N 28 A1LZK C09 H8 SING N N 29 A1LZK C09 H9 SING N N 30 A1LZK C10 H10 SING N N 31 A1LZK C10 H11 SING N N 32 A1LZK C10 H12 SING N N 33 A1LZK C11 H13 SING N N 34 A1LZK C12 H15 SING N N 35 A1LZK C13 H17 SING N N 36 A1LZK C13 H18 SING N N 37 A1LZK C14 H19 SING N N 38 A1LZK C15 H20 SING N N 39 A1LZK C17 H21 SING N N 40 A1LZK C18 H24 SING N N 41 A1LZK C18 H25 SING N N 42 A1LZK C19 H26 SING N N 43 A1LZK C19 H27 SING N N 44 A1LZK C20 H28 SING N N 45 A1LZK C20 H29 SING N N 46 A1LZK C21 H30 SING N N 47 A1LZK C22 H31 SING N N 48 A1LZK C22 H32 SING N N 49 A1LZK C22 H33 SING N N 50 A1LZK O05 H34 SING N N 51 A1LZK C17 O23 DOUB N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LZK InChI InChI 1.06 "InChI=1S/C20H28O3/c1-12(2)15-8-9-20(5,18(15)19(22)23)10-17-13(3)6-7-16(17)14(4)11-21/h8-9,11-13,16-17H,4,6-7,10H2,1-3,5H3,(H,22,23)/t13-,16+,17-,20+/m1/s1" A1LZK InChIKey InChI 1.06 CSCGDRYDSLORNR-UDUZWTERSA-N A1LZK SMILES_CANONICAL CACTVS 3.385 "CC(C)C1=C(C(O)=O)[C@](C)(C[C@@H]2[C@H](C)CC[C@H]2C(=C)C=O)C=C1" A1LZK SMILES CACTVS 3.385 "CC(C)C1=C(C(O)=O)[C](C)(C[CH]2[CH](C)CC[CH]2C(=C)C=O)C=C1" A1LZK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CC[C@H]([C@@H]1C[C@@]2(C=CC(=C2C(=O)O)C(C)C)C)C(=C)C=O" A1LZK SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCC(C1CC2(C=CC(=C2C(=O)O)C(C)C)C)C(=C)C=O" # _pdbx_chem_comp_identifier.comp_id A1LZK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{R})-5-methyl-5-[[(1~{R},2~{R},5~{R})-2-methyl-5-(3-oxidanylideneprop-1-en-2-yl)cyclopentyl]methyl]-2-propan-2-yl-cyclopenta-1,3-diene-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LZK "Create component" 2024-03-26 PDBJ A1LZK "Modify PCM" 2024-09-27 PDBE A1LZK "Initial release" 2025-10-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1LZK _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #