data_A1LZV # _chem_comp.id A1LZV _chem_comp.name "Cdp-DG(16:0/16:0)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C44 H81 N3 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;1,2-dihexadecanoyl-sn-glycero-3-cytidine-5'-diphosphate; [(2~{R})-3-[[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-29 _chem_comp.pdbx_modified_date 2024-11-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 954.073 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LZV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8YR6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LZV OCL O1 O 0 1 N N N N N N 25.007 8.642 46.538 0.562 0.604 4.724 OCL A1LZV 1 A1LZV CBE C1 C 0 1 N N N N N N 25.742 7.966 45.860 0.307 0.213 3.609 CBE A1LZV 2 A1LZV CBF C2 C 0 1 N N N N N N 25.335 7.210 44.621 1.305 0.405 2.497 CBF A1LZV 3 A1LZV CBG C3 C 0 1 N N N N N N 23.863 6.927 44.531 2.543 1.121 3.040 CBG A1LZV 4 A1LZV CBH C4 C 0 1 N N N N N N 23.470 6.307 43.197 3.557 1.316 1.911 CBH A1LZV 5 A1LZV CBI C5 C 0 1 N N N N N N 22.023 5.874 43.106 4.795 2.032 2.454 CBI A1LZV 6 A1LZV CBJ C6 C 0 1 N N N N N N 21.645 5.218 41.796 5.808 2.227 1.325 CBJ A1LZV 7 A1LZV CBK C7 C 0 1 N N N N N N 20.155 5.186 41.524 7.046 2.943 1.869 CBK A1LZV 8 A1LZV CBL C8 C 0 1 N N N N N N 19.749 4.359 40.324 8.060 3.137 0.739 CBL A1LZV 9 A1LZV CBM C9 C 0 1 N N N N N N 19.934 2.862 40.495 9.298 3.853 1.283 CBM A1LZV 10 A1LZV CBN C10 C 0 1 N N N N N N 18.828 1.865 40.781 10.311 4.048 0.153 CBN A1LZV 11 A1LZV CBO C11 C 0 1 N N N N N N 18.944 0.372 40.515 11.550 4.764 0.697 CBO A1LZV 12 A1LZV CBP C12 C 0 1 N N N N N N 18.283 -0.523 41.552 12.563 4.959 -0.433 CBP A1LZV 13 A1LZV CBQ C13 C 0 1 N N N N N N 16.959 -1.121 41.120 13.801 5.674 0.111 CBQ A1LZV 14 A1LZV CBR C14 C 0 1 N N N N N N 16.254 -1.930 42.193 14.815 5.869 -1.018 CBR A1LZV 15 A1LZV CBS C15 C 0 1 N N N N N N 14.954 -1.328 42.693 16.053 6.585 -0.475 CBS A1LZV 16 A1LZV CBT C16 C 0 1 N N N N N N 14.332 -2.056 43.869 17.066 6.780 -1.604 CBT A1LZV 17 A1LZV OBD O2 O 0 1 N N N N N N 27.037 7.796 46.121 -0.863 -0.397 3.363 OBD A1LZV 18 A1LZV CBC C17 C 0 1 N N N N N N 27.580 8.449 47.292 -1.774 -0.552 4.484 CBC A1LZV 19 A1LZV CBA C18 C 0 1 N N R N N N 27.275 7.601 48.508 -3.044 -1.264 4.013 CBA A1LZV 20 A1LZV CAZ C19 C 0 1 N N N N N N 27.916 8.101 49.779 -2.669 -2.587 3.343 CAZ A1LZV 21 A1LZV OAY O3 O 0 1 N N N N N N 27.572 9.492 50.024 -1.732 -2.341 2.293 OAY A1LZV 22 A1LZV PAV P1 P 0 1 N N N N N N 27.866 10.134 51.470 -1.119 -3.511 1.372 PAV A1LZV 23 A1LZV OAW O4 O 0 1 N N N N N N 28.929 9.342 52.167 -0.219 -4.491 2.279 OAW A1LZV 24 A1LZV OAX O5 O 0 1 N N N N N N 28.056 11.604 51.301 -2.221 -4.282 0.756 OAX A1LZV 25 A1LZV OAU O6 O 0 1 N N N N N N 26.444 9.907 52.184 -0.206 -2.861 0.216 OAU A1LZV 26 A1LZV PAR P2 P 0 1 N N N N N N 25.427 8.676 52.351 0.334 -3.382 -1.208 PAR A1LZV 27 A1LZV OAS O7 O 0 1 N N N N N N 24.315 9.102 53.255 -0.834 -3.244 -2.308 OAS A1LZV 28 A1LZV OAT O8 O 0 1 N N N N N N 26.232 7.471 52.718 0.738 -4.802 -1.093 OAT A1LZV 29 A1LZV "O5'" O9 O 0 1 N N N N N N 24.846 8.504 50.863 1.602 -2.498 -1.658 "O5'" A1LZV 30 A1LZV "C5'" C20 C 0 1 N N N N N N 23.841 7.482 50.609 2.371 -2.780 -2.829 "C5'" A1LZV 31 A1LZV "C4'" C21 C 0 1 N N R N N N 22.925 7.944 49.500 3.496 -1.751 -2.960 "C4'" A1LZV 32 A1LZV "C3'" C22 C 0 1 N N S N N N 21.913 9.037 49.884 4.264 -1.959 -4.284 "C3'" A1LZV 33 A1LZV "O3'" O10 O 0 1 N N N N N N 21.628 9.887 48.779 3.802 -1.044 -5.280 "O3'" A1LZV 34 A1LZV "C2'" C23 C 0 1 N N R N N N 20.701 8.198 50.304 5.735 -1.663 -3.916 "C2'" A1LZV 35 A1LZV "O2'" O11 O 0 1 N N N N N N 19.469 8.889 50.265 6.227 -0.557 -4.676 "O2'" A1LZV 36 A1LZV "O4'" O12 O 0 1 N N N N N N 22.117 6.828 49.031 4.484 -1.953 -1.926 "O4'" A1LZV 37 A1LZV "C1'" C24 C 0 1 N N R N N N 20.750 7.138 49.201 5.682 -1.310 -2.413 "C1'" A1LZV 38 A1LZV NAH N1 N 0 1 N N N N N N 19.996 5.898 49.529 6.861 -1.839 -1.724 NAH A1LZV 39 A1LZV CAG C25 C 0 1 N N N N N N 20.290 5.155 50.636 7.730 -0.985 -1.113 CAG A1LZV 40 A1LZV CAF C26 C 0 1 N N N N N N 19.607 4.034 50.923 8.816 -1.486 -0.479 CAF A1LZV 41 A1LZV CAD C27 C 0 1 N N N N N N 18.566 3.642 50.032 9.017 -2.882 -0.469 CAD A1LZV 42 A1LZV NAE N2 N 0 1 N N N N N N 17.854 2.545 50.249 10.112 -3.418 0.168 NAE A1LZV 43 A1LZV NAC N3 N 0 1 N N N N N N 18.273 4.370 48.945 8.145 -3.675 -1.077 NAC A1LZV 44 A1LZV CAB C28 C 0 1 N N N N N N 18.967 5.502 48.666 7.078 -3.167 -1.691 CAB A1LZV 45 A1LZV OAA O13 O 0 1 N N N N N N 18.714 6.197 47.669 6.290 -3.917 -2.243 OAA A1LZV 46 A1LZV OBB O14 O 0 1 N N N N N N 27.775 6.252 48.282 -3.747 -0.422 3.062 OBB A1LZV 47 A1LZV CBU C29 C 0 1 N N N N N N 26.908 5.233 48.349 -5.083 -0.541 3.013 CBU A1LZV 48 A1LZV OCK O15 O 0 1 N N N N N N 25.752 5.405 48.620 -5.647 -1.323 3.741 OCK A1LZV 49 A1LZV CBV C30 C 0 1 N N N N N N 27.521 3.897 48.027 -5.879 0.301 2.049 CBV A1LZV 50 A1LZV CBW C31 C 0 1 N N N N N N 26.575 2.957 47.335 -7.367 -0.027 2.195 CBW A1LZV 51 A1LZV CBX C32 C 0 1 N N N N N N 26.208 3.416 45.933 -8.175 0.827 1.217 CBX A1LZV 52 A1LZV CBY C33 C 0 1 N N N N N N 25.036 2.686 45.313 -9.663 0.499 1.362 CBY A1LZV 53 A1LZV CBZ C34 C 0 1 N N N N N N 25.294 2.161 43.913 -10.472 1.354 0.384 CBZ A1LZV 54 A1LZV CCA C35 C 0 1 N N N N N N 24.120 2.276 42.964 -11.959 1.025 0.530 CCA A1LZV 55 A1LZV CCB C36 C 0 1 N N N N N N 22.913 1.458 43.343 -12.768 1.880 -0.448 CCB A1LZV 56 A1LZV CCC C37 C 0 1 N N N N N N 23.152 -0.031 43.390 -14.255 1.552 -0.303 CCC A1LZV 57 A1LZV CCD C38 C 0 1 N N N N N N 23.255 -0.939 42.191 -15.064 2.406 -1.281 CCD A1LZV 58 A1LZV CCE C39 C 0 1 N N N N N N 22.083 -1.587 41.495 -16.551 2.078 -1.135 CCE A1LZV 59 A1LZV CCF C40 C 0 1 N N N N N N 21.989 -3.080 41.695 -17.360 2.933 -2.113 CCF A1LZV 60 A1LZV CCG C41 C 0 1 N N N N N N 21.322 -3.500 42.985 -18.847 2.605 -1.967 CCG A1LZV 61 A1LZV CCH C42 C 0 1 N N N N N N 22.227 -4.226 43.953 -19.656 3.459 -2.945 CCH A1LZV 62 A1LZV CCI C43 C 0 1 N N N N N N 22.529 -5.655 43.573 -21.143 3.131 -2.800 CCI A1LZV 63 A1LZV CCJ C44 C 0 1 N N N N N N 23.648 -6.283 44.368 -21.952 3.986 -3.778 CCJ A1LZV 64 A1LZV H1 H1 H 0 1 N N N N N N 25.873 6.250 44.610 1.594 -0.566 2.096 H1 A1LZV 65 A1LZV H2 H2 H 0 1 N N N N N N 25.627 7.804 43.742 0.856 1.006 1.705 H2 A1LZV 66 A1LZV H3 H3 H 0 1 N N N N N N 23.314 7.872 44.657 2.254 2.093 3.441 H3 A1LZV 67 A1LZV H4 H4 H 0 1 N N N N N N 23.587 6.232 45.338 2.992 0.521 3.832 H4 A1LZV 68 A1LZV H5 H5 H 0 1 N N N N N N 24.104 5.424 43.029 3.845 0.344 1.510 H5 A1LZV 69 A1LZV H6 H6 H 0 1 N N N N N N 23.657 7.048 42.406 3.108 1.916 1.120 H6 A1LZV 70 A1LZV H7 H7 H 0 1 N N N N N N 21.389 6.763 43.240 4.506 3.003 2.855 H7 A1LZV 71 A1LZV H8 H8 H 0 1 N N N N N N 21.827 5.158 43.918 5.244 1.431 3.246 H8 A1LZV 72 A1LZV H9 H9 H 0 1 N N N N N N 22.015 4.182 41.809 6.097 1.255 0.924 H9 A1LZV 73 A1LZV H10 H10 H 0 1 N N N N N N 22.133 5.771 40.980 5.359 2.827 0.534 H10 A1LZV 74 A1LZV H11 H11 H 0 1 N N N N N N 19.815 6.219 41.359 6.758 3.914 2.269 H11 A1LZV 75 A1LZV H12 H12 H 0 1 N N N N N N 19.654 4.772 42.411 7.495 2.342 2.660 H12 A1LZV 76 A1LZV H13 H13 H 0 1 N N N N N N 20.353 4.683 39.464 8.349 2.165 0.338 H13 A1LZV 77 A1LZV H14 H14 H 0 1 N N N N N N 18.686 4.552 40.119 7.611 3.738 -0.052 H14 A1LZV 78 A1LZV H15 H15 H 0 1 N N N N N N 20.401 2.518 39.560 9.009 4.825 1.683 H15 A1LZV 79 A1LZV H16 H16 H 0 1 N N N N N N 20.648 2.750 41.324 9.747 3.253 2.074 H16 A1LZV 80 A1LZV H17 H17 H 0 1 N N N N N N 18.609 1.961 41.855 10.600 3.076 -0.247 H17 A1LZV 81 A1LZV H18 H18 H 0 1 N N N N N N 17.960 2.206 40.198 9.863 4.648 -0.638 H18 A1LZV 82 A1LZV H19 H19 H 0 1 N N N N N N 18.480 0.163 39.540 11.261 5.735 1.097 H19 A1LZV 83 A1LZV H20 H20 H 0 1 N N N N N N 20.013 0.115 40.475 11.998 4.163 1.488 H20 A1LZV 84 A1LZV H21 H21 H 0 1 N N N N N N 18.973 -1.348 41.782 12.852 3.987 -0.833 H21 A1LZV 85 A1LZV H22 H22 H 0 1 N N N N N N 18.110 0.074 42.459 12.114 5.559 -1.224 H22 A1LZV 86 A1LZV H23 H23 H 0 1 N N N N N N 16.294 -0.299 40.816 13.512 6.646 0.512 H23 A1LZV 87 A1LZV H24 H24 H 0 1 N N N N N N 17.144 -1.780 40.259 14.250 5.074 0.902 H24 A1LZV 88 A1LZV H25 H25 H 0 1 N N N N N N 16.034 -2.926 41.781 15.104 4.898 -1.419 H25 A1LZV 89 A1LZV H26 H26 H 0 1 N N N N N N 16.937 -2.030 43.050 14.366 6.470 -1.810 H26 A1LZV 90 A1LZV H27 H27 H 0 1 N N N N N N 15.152 -0.290 42.998 15.764 7.557 -0.074 H27 A1LZV 91 A1LZV H28 H28 H 0 1 N N N N N N 14.231 -1.335 41.864 16.502 5.985 0.317 H28 A1LZV 92 A1LZV H29 H29 H 0 1 N N N N N N 13.399 -1.552 44.161 16.618 7.380 -2.396 H29 A1LZV 93 A1LZV H30 H30 H 0 1 N N N N N N 14.113 -3.095 43.582 17.948 7.290 -1.217 H30 A1LZV 94 A1LZV H31 H31 H 0 1 N N N N N N 15.033 -2.050 44.717 17.355 5.808 -2.005 H31 A1LZV 95 A1LZV H32 H32 H 0 1 N N N N N N 28.669 8.560 47.182 -1.293 -1.144 5.263 H32 A1LZV 96 A1LZV H33 H33 H 0 1 N N N N N N 27.120 9.442 47.409 -2.033 0.429 4.880 H33 A1LZV 97 A1LZV H34 H34 H 0 1 N N N N N N 26.185 7.569 48.651 -3.689 -1.460 4.870 H34 A1LZV 98 A1LZV H35 H35 H 0 1 N N N N N N 27.565 7.490 50.623 -2.221 -3.254 4.081 H35 A1LZV 99 A1LZV H36 H36 H 0 1 N N N N N N 29.009 8.011 49.690 -3.564 -3.052 2.930 H36 A1LZV 100 A1LZV H37 H37 H 0 1 N N N N N N 29.635 9.921 52.429 0.524 -4.052 2.715 H37 A1LZV 101 A1LZV H38 H38 H 0 1 N N N N N N 24.263 8.509 53.995 -1.148 -2.338 -2.436 H38 A1LZV 102 A1LZV H39 H39 H 0 1 N N N N N N 23.253 7.310 51.523 2.799 -3.779 -2.751 H39 A1LZV 103 A1LZV H40 H40 H 0 1 N N N N N N 24.336 6.546 50.310 1.727 -2.728 -3.707 H40 A1LZV 104 A1LZV H41 H41 H 0 1 N N N N N N 23.541 8.321 48.671 3.093 -0.740 -2.910 H41 A1LZV 105 A1LZV H42 H42 H 0 1 N N N N N N 22.290 9.608 50.745 4.156 -2.988 -4.630 H42 A1LZV 106 A1LZV H43 H43 H 0 1 N N N N N N 21.002 10.551 49.043 4.250 -1.131 -6.132 H43 A1LZV 107 A1LZV H44 H44 H 0 1 N N N N N N 20.882 7.734 51.285 6.355 -2.544 -4.081 H44 A1LZV 108 A1LZV H45 H45 H 0 1 N N N N N N 19.451 9.543 50.953 6.226 -0.704 -5.631 H45 A1LZV 109 A1LZV H46 H46 H 0 1 N N N N N N 20.342 7.574 48.277 5.616 -0.231 -2.277 H46 A1LZV 110 A1LZV H47 H47 H 0 1 N N N N N N 21.086 5.474 51.293 7.554 0.080 -1.135 H47 A1LZV 111 A1LZV H48 H48 H 0 1 N N N N N N 19.839 3.449 51.801 9.517 -0.827 0.011 H48 A1LZV 112 A1LZV H49 H49 H 0 1 N N N N N N 17.128 2.286 49.612 10.748 -2.836 0.612 H49 A1LZV 113 A1LZV H50 H50 H 0 1 N N N N N N 18.043 1.976 51.049 10.248 -4.378 0.174 H50 A1LZV 114 A1LZV H51 H51 H 0 1 N N N N N N 27.852 3.430 48.966 -5.717 1.356 2.269 H51 A1LZV 115 A1LZV H52 H52 H 0 1 N N N N N N 28.390 4.061 47.373 -5.558 0.088 1.029 H52 A1LZV 116 A1LZV H53 H53 H 0 1 N N N N N N 25.654 2.882 47.932 -7.529 -1.083 1.975 H53 A1LZV 117 A1LZV H54 H54 H 0 1 N N N N N N 27.050 1.967 47.268 -7.688 0.185 3.214 H54 A1LZV 118 A1LZV H55 H55 H 0 1 N N N N N N 27.084 3.269 45.285 -8.013 1.882 1.436 H55 A1LZV 119 A1LZV H56 H56 H 0 1 N N N N N N 25.960 4.487 45.977 -7.854 0.614 0.197 H56 A1LZV 120 A1LZV H57 H57 H 0 1 N N N N N N 24.183 3.379 45.269 -9.825 -0.556 1.143 H57 A1LZV 121 A1LZV H58 H58 H 0 1 N N N N N N 24.782 1.833 45.959 -9.984 0.712 2.382 H58 A1LZV 122 A1LZV H59 H59 H 0 1 N N N N N N 25.568 1.098 43.991 -10.309 2.409 0.604 H59 A1LZV 123 A1LZV H60 H60 H 0 1 N N N N N N 26.136 2.726 43.486 -10.151 1.141 -0.635 H60 A1LZV 124 A1LZV H61 H61 H 0 1 N N N N N N 24.454 1.951 41.967 -12.121 -0.030 0.310 H61 A1LZV 125 A1LZV H62 H62 H 0 1 N N N N N N 23.817 3.333 42.922 -12.280 1.238 1.550 H62 A1LZV 126 A1LZV H63 H63 H 0 1 N N N N N N 22.577 1.783 44.339 -12.605 2.935 -0.229 H63 A1LZV 127 A1LZV H64 H64 H 0 1 N N N N N N 22.120 1.655 42.606 -12.447 1.667 -1.468 H64 A1LZV 128 A1LZV H65 H65 H 0 1 N N N N N N 22.328 -0.439 43.994 -14.417 0.496 -0.522 H65 A1LZV 129 A1LZV H66 H66 H 0 1 N N N N N N 24.101 -0.156 43.932 -14.576 1.765 0.717 H66 A1LZV 130 A1LZV H67 H67 H 0 1 N N N N N N 23.905 -1.769 42.506 -14.901 3.462 -1.061 H67 A1LZV 131 A1LZV H68 H68 H 0 1 N N N N N N 23.765 -0.347 41.417 -14.743 2.194 -2.300 H68 A1LZV 132 A1LZV H69 H69 H 0 1 N N N N N N 22.170 -1.389 40.417 -16.714 1.023 -1.354 H69 A1LZV 133 A1LZV H70 H70 H 0 1 N N N N N N 21.159 -1.129 41.878 -16.872 2.291 -0.115 H70 A1LZV 134 A1LZV H71 H71 H 0 1 N N N N N N 21.414 -3.503 40.858 -17.198 3.988 -1.894 H71 A1LZV 135 A1LZV H72 H72 H 0 1 N N N N N N 23.009 -3.493 41.686 -17.039 2.720 -3.133 H72 A1LZV 136 A1LZV H73 H73 H 0 1 N N N N N N 20.940 -2.597 43.484 -19.010 1.549 -2.187 H73 A1LZV 137 A1LZV H74 H74 H 0 1 N N N N N N 20.482 -4.165 42.736 -19.168 2.817 -0.948 H74 A1LZV 138 A1LZV H75 H75 H 0 1 N N N N N N 23.179 -3.677 44.012 -19.494 4.514 -2.726 H75 A1LZV 139 A1LZV H76 H76 H 0 1 N N N N N N 21.743 -4.228 44.941 -19.335 3.246 -3.965 H76 A1LZV 140 A1LZV H77 H77 H 0 1 N N N N N N 21.619 -6.253 43.727 -21.306 2.076 -3.019 H77 A1LZV 141 A1LZV H78 H78 H 0 1 N N N N N N 22.807 -5.678 42.509 -21.464 3.344 -1.780 H78 A1LZV 142 A1LZV H79 H79 H 0 1 N N N N N N 23.802 -7.318 44.030 -21.632 3.773 -4.798 H79 A1LZV 143 A1LZV H80 H80 H 0 1 N N N N N N 24.573 -5.707 44.218 -23.012 3.752 -3.674 H80 A1LZV 144 A1LZV H81 H81 H 0 1 N N N N N N 23.384 -6.282 45.436 -21.790 5.041 -3.559 H81 A1LZV 145 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LZV CBL CBM SING N N 1 A1LZV CBL CBK SING N N 2 A1LZV CBM CBN SING N N 3 A1LZV CBO CBN SING N N 4 A1LZV CBO CBP SING N N 5 A1LZV CBQ CBP SING N N 6 A1LZV CBQ CBR SING N N 7 A1LZV CCE CCF SING N N 8 A1LZV CCE CCD SING N N 9 A1LZV CBK CBJ SING N N 10 A1LZV CCF CCG SING N N 11 A1LZV CBJ CBI SING N N 12 A1LZV CCD CCC SING N N 13 A1LZV CBR CBS SING N N 14 A1LZV CBS CBT SING N N 15 A1LZV CCA CCB SING N N 16 A1LZV CCA CBZ SING N N 17 A1LZV CCG CCH SING N N 18 A1LZV CBI CBH SING N N 19 A1LZV CBH CBG SING N N 20 A1LZV CCB CCC SING N N 21 A1LZV CCI CCH SING N N 22 A1LZV CCI CCJ SING N N 23 A1LZV CBZ CBY SING N N 24 A1LZV CBG CBF SING N N 25 A1LZV CBF CBE SING N N 26 A1LZV CBY CBX SING N N 27 A1LZV CBE OBD SING N N 28 A1LZV CBE OCL DOUB N N 29 A1LZV CBX CBW SING N N 30 A1LZV OBD CBC SING N N 31 A1LZV CBC CBA SING N N 32 A1LZV CBW CBV SING N N 33 A1LZV OAA CAB DOUB N N 34 A1LZV CBV CBU SING N N 35 A1LZV OBB CBU SING N N 36 A1LZV OBB CBA SING N N 37 A1LZV CBU OCK DOUB N N 38 A1LZV CBA CAZ SING N N 39 A1LZV CAB NAC SING N N 40 A1LZV CAB NAH SING N N 41 A1LZV "O3'" "C3'" SING N N 42 A1LZV NAC CAD DOUB N N 43 A1LZV "O4'" "C1'" SING N N 44 A1LZV "O4'" "C4'" SING N N 45 A1LZV "C1'" NAH SING N N 46 A1LZV "C1'" "C2'" SING N N 47 A1LZV "C4'" "C3'" SING N N 48 A1LZV "C4'" "C5'" SING N N 49 A1LZV NAH CAG SING N N 50 A1LZV CAZ OAY SING N N 51 A1LZV "C3'" "C2'" SING N N 52 A1LZV OAY PAV SING N N 53 A1LZV CAD NAE SING N N 54 A1LZV CAD CAF SING N N 55 A1LZV "O2'" "C2'" SING N N 56 A1LZV "C5'" "O5'" SING N N 57 A1LZV CAG CAF DOUB N N 58 A1LZV "O5'" PAR SING N N 59 A1LZV OAX PAV DOUB N N 60 A1LZV PAV OAW SING N N 61 A1LZV PAV OAU SING N N 62 A1LZV OAU PAR SING N N 63 A1LZV PAR OAT DOUB N N 64 A1LZV PAR OAS SING N N 65 A1LZV CBF H1 SING N N 66 A1LZV CBF H2 SING N N 67 A1LZV CBG H3 SING N N 68 A1LZV CBG H4 SING N N 69 A1LZV CBH H5 SING N N 70 A1LZV CBH H6 SING N N 71 A1LZV CBI H7 SING N N 72 A1LZV CBI H8 SING N N 73 A1LZV CBJ H9 SING N N 74 A1LZV CBJ H10 SING N N 75 A1LZV CBK H11 SING N N 76 A1LZV CBK H12 SING N N 77 A1LZV CBL H13 SING N N 78 A1LZV CBL H14 SING N N 79 A1LZV CBM H15 SING N N 80 A1LZV CBM H16 SING N N 81 A1LZV CBN H17 SING N N 82 A1LZV CBN H18 SING N N 83 A1LZV CBO H19 SING N N 84 A1LZV CBO H20 SING N N 85 A1LZV CBP H21 SING N N 86 A1LZV CBP H22 SING N N 87 A1LZV CBQ H23 SING N N 88 A1LZV CBQ H24 SING N N 89 A1LZV CBR H25 SING N N 90 A1LZV CBR H26 SING N N 91 A1LZV CBS H27 SING N N 92 A1LZV CBS H28 SING N N 93 A1LZV CBT H29 SING N N 94 A1LZV CBT H30 SING N N 95 A1LZV CBT H31 SING N N 96 A1LZV CBC H32 SING N N 97 A1LZV CBC H33 SING N N 98 A1LZV CBA H34 SING N N 99 A1LZV CAZ H35 SING N N 100 A1LZV CAZ H36 SING N N 101 A1LZV OAW H37 SING N N 102 A1LZV OAS H38 SING N N 103 A1LZV "C5'" H39 SING N N 104 A1LZV "C5'" H40 SING N N 105 A1LZV "C4'" H41 SING N N 106 A1LZV "C3'" H42 SING N N 107 A1LZV "O3'" H43 SING N N 108 A1LZV "C2'" H44 SING N N 109 A1LZV "O2'" H45 SING N N 110 A1LZV "C1'" H46 SING N N 111 A1LZV CAG H47 SING N N 112 A1LZV CAF H48 SING N N 113 A1LZV NAE H49 SING N N 114 A1LZV NAE H50 SING N N 115 A1LZV CBV H51 SING N N 116 A1LZV CBV H52 SING N N 117 A1LZV CBW H53 SING N N 118 A1LZV CBW H54 SING N N 119 A1LZV CBX H55 SING N N 120 A1LZV CBX H56 SING N N 121 A1LZV CBY H57 SING N N 122 A1LZV CBY H58 SING N N 123 A1LZV CBZ H59 SING N N 124 A1LZV CBZ H60 SING N N 125 A1LZV CCA H61 SING N N 126 A1LZV CCA H62 SING N N 127 A1LZV CCB H63 SING N N 128 A1LZV CCB H64 SING N N 129 A1LZV CCC H65 SING N N 130 A1LZV CCC H66 SING N N 131 A1LZV CCD H67 SING N N 132 A1LZV CCD H68 SING N N 133 A1LZV CCE H69 SING N N 134 A1LZV CCE H70 SING N N 135 A1LZV CCF H71 SING N N 136 A1LZV CCF H72 SING N N 137 A1LZV CCG H73 SING N N 138 A1LZV CCG H74 SING N N 139 A1LZV CCH H75 SING N N 140 A1LZV CCH H76 SING N N 141 A1LZV CCI H77 SING N N 142 A1LZV CCI H78 SING N N 143 A1LZV CCJ H79 SING N N 144 A1LZV CCJ H80 SING N N 145 A1LZV CCJ H81 SING N N 146 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LZV InChI InChI 1.06 "InChI=1S/C44H81N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-39(48)57-33-36(60-40(49)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)34-58-63(53,54)62-64(55,56)59-35-37-41(50)42(51)43(61-37)47-32-31-38(45)46-44(47)52/h31-32,36-37,41-43,50-51H,3-30,33-35H2,1-2H3,(H,53,54)(H,55,56)(H2,45,46,52)/t36-,37-,41-,42-,43-/m1/s1" A1LZV InChIKey InChI 1.06 ITYHVANGBZMQML-BQUKFSKHSA-N A1LZV SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCCCCCCCCCC" A1LZV SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N)OC(=O)CCCCCCCCCCCCCCC" A1LZV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCCCCCCCCC" A1LZV SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=NC2=O)N)O)O)OC(=O)CCCCCCCCCCCCCCC" # _pdbx_chem_comp_identifier.comp_id A1LZV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-3-[[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LZV "Create component" 2024-03-29 PDBJ A1LZV "Initial release" 2024-11-20 RCSB A1LZV "Modify name" 2024-11-27 PDBJ A1LZV "Modify synonyms" 2024-11-27 PDBJ # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 A1LZV "1,2-dihexadecanoyl-sn-glycero-3-cytidine-5'-diphosphate" PUBCHEM ? 2 A1LZV "[(2~{R})-3-[[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate" PDB ? #