data_A1MAL # _chem_comp.id A1MAL _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methylsulfanyl-butanoyl]sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N7 O7 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "sulfamate analog of methionyl adenylate (Met-AMS)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-07-01 _chem_comp.pdbx_modified_date 2025-09-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MAL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MAL N2 N1 N 0 1 N N N N N N ? ? ? -2.936 2.229 -0.724 N2 A1MAL 1 A1MAL CA C1 C 0 1 N N S N N N ? ? ? -3.508 1.079 -0.012 CA A1MAL 2 A1MAL CB C2 C 0 1 N N N N N N ? ? ? -5.034 1.117 -0.125 CB A1MAL 3 A1MAL CG C3 C 0 1 N N N N N N ? ? ? -5.569 2.351 0.604 CG A1MAL 4 A1MAL SD S1 S 0 1 N N N N N N ? ? ? -7.377 2.396 0.470 SD A1MAL 5 A1MAL CE C4 C 0 1 N N N N N N ? ? ? -7.817 3.903 1.379 CE A1MAL 6 A1MAL C9 C5 C 0 1 N N N N N N ? ? ? -2.991 -0.198 -0.622 C9 A1MAL 7 A1MAL N8 N2 N 0 1 N N N N N N ? ? ? -3.038 -1.347 0.080 N8 A1MAL 8 A1MAL S1 S2 S 0 1 N N N N N N ? ? ? -2.469 -2.751 -0.591 S1 A1MAL 9 A1MAL O1S O1 O 0 1 N N N N N N ? ? ? -2.624 -3.760 0.398 O1S A1MAL 10 A1MAL O2S O2 O 0 1 N N N N N N ? ? ? -3.044 -2.838 -1.887 O2S A1MAL 11 A1MAL "O5'" O3 O 0 1 N N N N N N ? ? ? -0.971 -2.577 -0.796 "O5'" A1MAL 12 A1MAL "C5'" C6 C 0 1 N N N N N N ? ? ? -0.205 -2.664 0.408 "C5'" A1MAL 13 A1MAL "C4'" C7 C 0 1 N N R N N N ? ? ? 1.278 -2.476 0.083 "C4'" A1MAL 14 A1MAL "O4'" O4 O 0 1 N N N N N N ? ? ? 1.537 -1.111 -0.311 "O4'" A1MAL 15 A1MAL "C3'" C8 C 0 1 N N S N N N ? ? ? 2.137 -2.691 1.350 "C3'" A1MAL 16 A1MAL "O3'" O5 O 0 1 N N N N N N ? ? ? 2.680 -4.012 1.368 "O3'" A1MAL 17 A1MAL "C2'" C9 C 0 1 N N R N N N ? ? ? 3.265 -1.643 1.220 "C2'" A1MAL 18 A1MAL "O2'" O6 O 0 1 N N N N N N ? ? ? 4.540 -2.285 1.155 "O2'" A1MAL 19 A1MAL "C1'" C10 C 0 1 N N R N N N ? ? ? 2.954 -0.919 -0.109 "C1'" A1MAL 20 A1MAL N9 N3 N 0 1 Y N N N N N ? ? ? 3.265 0.508 0.003 N9 A1MAL 21 A1MAL C8 C11 C 0 1 Y N N N N N ? ? ? 2.401 1.494 0.377 C8 A1MAL 22 A1MAL N7 N4 N 0 1 Y N N N N N ? ? ? 3.010 2.645 0.369 N7 A1MAL 23 A1MAL C5 C12 C 0 1 Y N N N N N ? ? ? 4.299 2.470 -0.010 C5 A1MAL 24 A1MAL C6 C13 C 0 1 Y N N N N N ? ? ? 5.399 3.325 -0.195 C6 A1MAL 25 A1MAL N6 N5 N 0 1 N N N N N N ? ? ? 5.283 4.686 0.026 N6 A1MAL 26 A1MAL N1 N6 N 0 1 Y N N N N N ? ? ? 6.553 2.795 -0.586 N1 A1MAL 27 A1MAL C2 C14 C 0 1 Y N N N N N ? ? ? 6.673 1.498 -0.799 C2 A1MAL 28 A1MAL N3 N7 N 0 1 Y N N N N N ? ? ? 5.671 0.660 -0.639 N3 A1MAL 29 A1MAL C4 C15 C 0 1 Y N N N N N ? ? ? 4.479 1.097 -0.244 C4 A1MAL 30 A1MAL O1 O7 O 0 1 N N N N N N ? ? ? -2.532 -0.191 -1.745 O1 A1MAL 31 A1MAL H1 H1 H 0 1 N N N N N N ? ? ? -1.934 2.263 -0.610 H1 A1MAL 32 A1MAL H2 H2 H 0 1 N N N N N N ? ? ? -3.189 2.212 -1.701 H2 A1MAL 33 A1MAL H4 H4 H 0 1 N N N N N N ? ? ? -3.221 1.123 1.039 H4 A1MAL 34 A1MAL H5 H5 H 0 1 N N N N N N ? ? ? -5.319 1.163 -1.176 H5 A1MAL 35 A1MAL H6 H6 H 0 1 N N N N N N ? ? ? -5.454 0.218 0.327 H6 A1MAL 36 A1MAL H7 H7 H 0 1 N N N N N N ? ? ? -5.283 2.305 1.655 H7 A1MAL 37 A1MAL H8 H8 H 0 1 N N N N N N ? ? ? -5.149 3.250 0.153 H8 A1MAL 38 A1MAL H9 H9 H 0 1 N N N N N N ? ? ? -7.340 4.763 0.908 H9 A1MAL 39 A1MAL H10 H10 H 0 1 N N N N N N ? ? ? -8.899 4.034 1.364 H10 A1MAL 40 A1MAL H11 H11 H 0 1 N N N N N N ? ? ? -7.475 3.818 2.410 H11 A1MAL 41 A1MAL H12 H12 H 0 1 N N N N N N ? ? ? -3.404 -1.353 0.978 H12 A1MAL 42 A1MAL H13 H13 H 0 1 N N N N N N ? ? ? -0.527 -1.887 1.100 H13 A1MAL 43 A1MAL H14 H14 H 0 1 N N N N N N ? ? ? -0.356 -3.642 0.864 H14 A1MAL 44 A1MAL H15 H15 H 0 1 N N N N N N ? ? ? 1.584 -3.165 -0.704 H15 A1MAL 45 A1MAL H16 H16 H 0 1 N N N N N N ? ? ? 1.546 -2.507 2.247 H16 A1MAL 46 A1MAL H17 H17 H 0 1 N N N N N N ? ? ? 3.228 -4.201 2.142 H17 A1MAL 47 A1MAL H18 H18 H 0 1 N N N N N N ? ? ? 3.233 -0.943 2.055 H18 A1MAL 48 A1MAL H19 H19 H 0 1 N N N N N N ? ? ? 4.759 -2.804 1.940 H19 A1MAL 49 A1MAL H20 H20 H 0 1 N N N N N N ? ? ? 3.519 -1.367 -0.927 H20 A1MAL 50 A1MAL H21 H21 H 0 1 N N N N N N ? ? ? 1.365 1.343 0.642 H21 A1MAL 51 A1MAL H22 H22 H 0 1 N N N N N N ? ? ? 4.435 5.061 0.312 H22 A1MAL 52 A1MAL H23 H23 H 0 1 N N N N N N ? ? ? 6.049 5.266 -0.105 H23 A1MAL 53 A1MAL H24 H24 H 0 1 N N N N N N ? ? ? 7.628 1.110 -1.121 H24 A1MAL 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MAL C2 N3 SING Y N 1 A1MAL C2 N1 DOUB Y N 2 A1MAL N3 C4 DOUB Y N 3 A1MAL N1 C6 SING Y N 4 A1MAL "O4'" "C4'" SING N N 5 A1MAL "O4'" "C1'" SING N N 6 A1MAL "O3'" "C3'" SING N N 7 A1MAL "C4'" "C5'" SING N N 8 A1MAL "C4'" "C3'" SING N N 9 A1MAL C4 N9 SING Y N 10 A1MAL C4 C5 SING Y N 11 A1MAL "C1'" N9 SING N N 12 A1MAL "C1'" "C2'" SING N N 13 A1MAL "C5'" "O5'" SING N N 14 A1MAL "C3'" "C2'" SING N N 15 A1MAL C6 C5 DOUB Y N 16 A1MAL C6 N6 SING N N 17 A1MAL N9 C8 SING Y N 18 A1MAL C5 N7 SING Y N 19 A1MAL SD CE SING N N 20 A1MAL SD CG SING N N 21 A1MAL "C2'" "O2'" SING N N 22 A1MAL "O5'" S1 SING N N 23 A1MAL C8 N7 DOUB Y N 24 A1MAL CB CG SING N N 25 A1MAL CB CA SING N N 26 A1MAL O1S S1 DOUB N N 27 A1MAL S1 N8 SING N N 28 A1MAL S1 O2S DOUB N N 29 A1MAL N8 C9 SING N N 30 A1MAL N2 CA SING N N 31 A1MAL C9 CA SING N N 32 A1MAL C9 O1 DOUB N N 33 A1MAL N2 H1 SING N N 34 A1MAL N2 H2 SING N N 35 A1MAL CA H4 SING N N 36 A1MAL CB H5 SING N N 37 A1MAL CB H6 SING N N 38 A1MAL CG H7 SING N N 39 A1MAL CG H8 SING N N 40 A1MAL CE H9 SING N N 41 A1MAL CE H10 SING N N 42 A1MAL CE H11 SING N N 43 A1MAL N8 H12 SING N N 44 A1MAL "C5'" H13 SING N N 45 A1MAL "C5'" H14 SING N N 46 A1MAL "C4'" H15 SING N N 47 A1MAL "C3'" H16 SING N N 48 A1MAL "O3'" H17 SING N N 49 A1MAL "C2'" H18 SING N N 50 A1MAL "O2'" H19 SING N N 51 A1MAL "C1'" H20 SING N N 52 A1MAL C8 H21 SING N N 53 A1MAL N6 H22 SING N N 54 A1MAL N6 H23 SING N N 55 A1MAL C2 H24 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MAL InChI InChI 1.06 "InChI=1S/C15H23N7O7S2/c1-30-3-2-7(16)14(25)21-31(26,27)28-4-8-10(23)11(24)15(29-8)22-6-20-9-12(17)18-5-19-13(9)22/h5-8,10-11,15,23-24H,2-4,16H2,1H3,(H,21,25)(H2,17,18,19)/t7-,8+,10+,11+,15+/m0/s1" A1MAL InChIKey InChI 1.06 PBPVXRRYIIRSNJ-JVEUSOJLSA-N A1MAL SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" A1MAL SMILES CACTVS 3.385 "CSCC[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" A1MAL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSCC[C@@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" A1MAL SMILES "OpenEye OEToolkits" 2.0.7 "CSCCC(C(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1MAL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-4-methylsulfanyl-butanoyl]sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MAL "Create component" 2025-07-01 PDBJ A1MAL "Modify synonyms" 2025-07-09 PDBJ A1MAL "Modify coordinates" 2025-09-15 RCSB A1MAL "Initial release" 2025-09-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1MAL _pdbx_chem_comp_synonyms.name "sulfamate analog of methionyl adenylate (Met-AMS)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #