data_A1MB8 # _chem_comp.id A1MB8 _chem_comp.name "(2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-phenyl-propanoic acid" _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H21 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-19 _chem_comp.pdbx_modified_date 2026-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 396.332 _chem_comp.one_letter_code F _chem_comp.three_letter_code A1MB8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WU1 _chem_comp.pdbx_subcomponent_list "PLP PHE" _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MB8 CB C1 C 0 1 N N N N N N -9.786 -24.184 16.316 -2.887 2.297 -0.615 CB A1MB8 1 A1MB8 CA C2 C 0 1 N N R N N N -9.166 -24.429 14.933 -1.792 1.912 0.381 CA A1MB8 2 A1MB8 N N1 N 0 1 N N N N N N -8.515 -23.220 14.413 -1.163 0.654 -0.044 N A1MB8 3 A1MB8 C C3 C 0 1 N N N N N N -8.136 -25.582 14.954 -0.752 3.002 0.432 C A1MB8 4 A1MB8 OXT O1 O 0 1 N N N N N N -7.187 -25.445 14.193 0.395 2.756 0.143 OXT A1MB8 5 A1MB8 O O2 O 0 1 N N N N N N -8.325 -26.555 15.693 -1.101 4.245 0.798 O A1MB8 6 A1MB8 O3P O3 O 0 1 N N N N N N -8.970 -17.940 17.314 6.016 0.057 -0.980 O3P A1MB8 7 A1MB8 P P1 P 0 1 N N N N N N -10.094 -18.559 16.598 4.707 0.708 -0.304 P A1MB8 8 A1MB8 O1P O4 O 0 1 N N N N N N -10.409 -19.932 16.999 5.073 1.235 1.172 O1P A1MB8 9 A1MB8 O2P O5 O 0 1 N N N N N N -11.237 -17.672 16.384 4.237 1.842 -1.131 O2P A1MB8 10 A1MB8 O4P O6 O 0 1 N N N N N N -9.557 -18.756 15.120 3.546 -0.402 -0.205 O4P A1MB8 11 A1MB8 C5A C4 C 0 1 N N N N N N -10.342 -19.460 14.161 2.225 -0.108 0.254 C5A A1MB8 12 A1MB8 C5 C5 C 0 1 Y N N N N N -9.532 -19.923 13.135 1.391 -1.363 0.223 C5 A1MB8 13 A1MB8 C6 C6 C 0 1 Y N N N N N -9.208 -19.073 12.086 1.941 -2.557 -0.201 C6 A1MB8 14 A1MB8 N1 N2 N 0 1 Y N N N N N -8.399 -19.508 11.040 1.221 -3.662 -0.228 N1 A1MB8 15 A1MB8 C2 C7 C 0 1 Y N N N N N -7.921 -20.754 11.037 -0.043 -3.677 0.146 C2 A1MB8 16 A1MB8 C2A C8 C 0 1 N N N N N N -7.116 -21.172 9.988 -0.820 -4.967 0.097 C2A A1MB8 17 A1MB8 C3 C9 C 0 1 Y N N N N N -8.235 -21.610 12.083 -0.664 -2.517 0.585 C3 A1MB8 18 A1MB8 O3 O7 O 0 1 N N N N N N -7.733 -22.866 12.039 -1.968 -2.537 0.970 O3 A1MB8 19 A1MB8 C4 C10 C 0 1 Y N N N N N -9.042 -21.223 13.154 0.065 -1.333 0.625 C4 A1MB8 20 A1MB8 C4A C11 C 0 1 N N N N N N -9.396 -22.063 14.224 -0.570 -0.051 1.099 C4A A1MB8 21 A1MB8 C22 C12 C 0 1 Y N N N N N -10.829 -25.070 16.539 -3.987 1.267 -0.576 C22 A1MB8 22 A1MB8 C23 C13 C 0 1 Y N N N N N -11.871 -25.163 15.628 -3.932 0.165 -1.408 C23 A1MB8 23 A1MB8 C24 C14 C 0 1 Y N N N N N -12.911 -26.053 15.858 -4.941 -0.779 -1.372 C24 A1MB8 24 A1MB8 C25 C15 C 0 1 Y N N N N N -12.908 -26.847 16.996 -6.004 -0.622 -0.504 C25 A1MB8 25 A1MB8 C26 C16 C 0 1 Y N N N N N -11.865 -26.755 17.906 -6.059 0.481 0.329 C26 A1MB8 26 A1MB8 C27 C17 C 0 1 Y N N N N N -10.827 -25.864 17.676 -5.048 1.423 0.296 C27 A1MB8 27 A1MB8 H1 H1 H 0 1 N N N N N N -9.017 -24.327 17.089 -3.293 3.273 -0.350 H1 A1MB8 28 A1MB8 H2 H2 H 0 1 N N N N N N -10.168 -23.154 16.365 -2.465 2.340 -1.620 H2 A1MB8 29 A1MB8 H3 H3 H 0 1 N N N N N N -9.976 -24.716 14.246 -2.230 1.782 1.371 H3 A1MB8 30 A1MB8 H4 H4 H 0 1 N N N N N N -8.108 -23.445 13.528 -0.475 0.820 -0.764 H4 A1MB8 31 A1MB8 H6 H6 H 0 1 N N N N N N -7.620 -27.181 15.580 -0.400 4.911 0.815 H6 A1MB8 32 A1MB8 H7 H7 H 0 1 N N N N N N -9.185 -17.039 17.523 6.758 0.670 -1.072 H7 A1MB8 33 A1MB8 H8 H8 H 0 1 N N N N N N -11.351 -20.036 17.060 5.389 0.544 1.770 H8 A1MB8 34 A1MB8 H9 H9 H 0 1 N N N N N N -11.104 -18.784 13.747 2.272 0.272 1.275 H9 A1MB8 35 A1MB8 H10 H10 H 0 1 N N N N N N -10.835 -20.313 14.649 1.774 0.644 -0.393 H10 A1MB8 36 A1MB8 H11 H11 H 0 1 N N N N N N -9.588 -18.062 12.082 2.974 -2.587 -0.516 H11 A1MB8 37 A1MB8 H12 H12 H 0 1 N N N N N N -6.990 -20.348 9.271 -0.720 -5.488 1.049 H12 A1MB8 38 A1MB8 H13 H13 H 0 1 N N N N N N -6.132 -21.472 10.378 -1.872 -4.750 -0.090 H13 A1MB8 39 A1MB8 H14 H14 H 0 1 N N N N N N -7.587 -22.028 9.483 -0.431 -5.595 -0.704 H14 A1MB8 40 A1MB8 H15 H15 H 0 1 N N N N N N -8.018 -23.349 12.806 -2.097 -2.723 1.910 H15 A1MB8 41 A1MB8 H16 H16 H 0 1 N N N N N N -9.380 -21.466 15.148 0.189 0.580 1.562 H16 A1MB8 42 A1MB8 H17 H17 H 0 1 N N N N N N -10.416 -22.435 14.045 -1.347 -0.279 1.829 H17 A1MB8 43 A1MB8 H18 H18 H 0 1 N N N N N N -11.873 -24.545 14.742 -3.101 0.042 -2.087 H18 A1MB8 44 A1MB8 H19 H19 H 0 1 N N N N N N -13.723 -26.128 15.150 -4.898 -1.640 -2.023 H19 A1MB8 45 A1MB8 H20 H20 H 0 1 N N N N N N -13.719 -27.538 17.174 -6.793 -1.359 -0.476 H20 A1MB8 46 A1MB8 H21 H21 H 0 1 N N N N N N -11.861 -27.375 18.790 -6.890 0.604 1.008 H21 A1MB8 47 A1MB8 H22 H22 H 0 1 N N N N N N -10.015 -25.788 18.384 -5.089 2.282 0.949 H22 A1MB8 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MB8 C2A C2 SING N N 1 A1MB8 C2 N1 DOUB Y N 2 A1MB8 C2 C3 SING Y N 3 A1MB8 N1 C6 SING Y N 4 A1MB8 O3 C3 SING N N 5 A1MB8 C3 C4 DOUB Y N 6 A1MB8 C6 C5 DOUB Y N 7 A1MB8 C5 C4 SING Y N 8 A1MB8 C5 C5A SING N N 9 A1MB8 C4 C4A SING N N 10 A1MB8 C5A O4P SING N N 11 A1MB8 OXT C DOUB N N 12 A1MB8 C4A N SING N N 13 A1MB8 N CA SING N N 14 A1MB8 CA C SING N N 15 A1MB8 CA CB SING N N 16 A1MB8 C O SING N N 17 A1MB8 O4P P SING N N 18 A1MB8 C23 C24 DOUB Y N 19 A1MB8 C23 C22 SING Y N 20 A1MB8 C24 C25 SING Y N 21 A1MB8 CB C22 SING N N 22 A1MB8 O2P P DOUB N N 23 A1MB8 C22 C27 DOUB Y N 24 A1MB8 P O1P SING N N 25 A1MB8 P O3P SING N N 26 A1MB8 C25 C26 DOUB Y N 27 A1MB8 C27 C26 SING Y N 28 A1MB8 CB H1 SING N N 29 A1MB8 CB H2 SING N N 30 A1MB8 CA H3 SING N N 31 A1MB8 N H4 SING N N 32 A1MB8 O H6 SING N N 33 A1MB8 O3P H7 SING N N 34 A1MB8 O1P H8 SING N N 35 A1MB8 C5A H9 SING N N 36 A1MB8 C5A H10 SING N N 37 A1MB8 C6 H11 SING N N 38 A1MB8 C2A H12 SING N N 39 A1MB8 C2A H13 SING N N 40 A1MB8 C2A H14 SING N N 41 A1MB8 O3 H15 SING N N 42 A1MB8 C4A H16 SING N N 43 A1MB8 C4A H17 SING N N 44 A1MB8 C23 H18 SING N N 45 A1MB8 C24 H19 SING N N 46 A1MB8 C25 H20 SING N N 47 A1MB8 C26 H21 SING N N 48 A1MB8 C27 H22 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MB8 InChI InChI 1.06 "InChI=1S/C17H21N2O7P/c1-11-16(20)14(13(8-18-11)10-26-27(23,24)25)9-19-15(17(21)22)7-12-5-3-2-4-6-12/h2-6,8,15,19-20H,7,9-10H2,1H3,(H,21,22)(H2,23,24,25)/t15-/m1/s1" A1MB8 InChIKey InChI 1.06 JXJRIGSOQAQLLI-OAHLLOKOSA-N A1MB8 SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@H](Cc2ccccc2)C(O)=O)c1O" A1MB8 SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](Cc2ccccc2)C(O)=O)c1O" A1MB8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](Cc2ccccc2)C(=O)O)O" A1MB8 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(Cc2ccccc2)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1MB8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-phenyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MB8 "Create component" 2025-09-19 PDBJ A1MB8 "Initial release" 2026-03-25 RCSB #