data_A1MBG # _chem_comp.id A1MBG _chem_comp.name "(~{E})-3-(6-azanylpyridin-3-yl)-~{N}-[[(2~{S})-7-chloranyl-5-(4-piperazin-1-ylcarbonylphenyl)-2,3-dihydro-1-benzofuran-2-yl]methyl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 Cl N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-20 _chem_comp.pdbx_modified_date 2026-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.007 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MBG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WDD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MBG C13 C1 C 0 1 N N S N N N 9.245 -11.230 45.095 -2.018 1.183 0.671 C13 A1MBG 1 A1MBG C15 C2 C 0 1 Y N N N N N 8.078 -10.319 47.002 -0.332 0.104 -0.425 C15 A1MBG 2 A1MBG C20 C3 C 0 1 Y N N N N N 9.322 -7.432 49.995 3.924 0.417 -0.433 C20 A1MBG 3 A1MBG C21 C4 C 0 1 Y N N N N N 8.415 -6.532 50.611 4.541 1.548 0.104 C21 A1MBG 4 A1MBG C22 C5 C 0 1 Y N N N N N 8.883 -5.619 51.545 5.913 1.651 0.099 C22 A1MBG 5 A1MBG C24 C6 C 0 1 N N N N N N 10.856 -4.602 52.963 8.161 0.734 -0.451 C24 A1MBG 6 A1MBG C28 C7 C 0 1 N N N N N N 14.449 -5.287 52.740 8.823 -1.908 1.820 C28 A1MBG 7 A1MBG C01 C8 C 0 1 Y N N N N N 11.762 -14.814 38.255 -11.582 -0.239 0.020 C01 A1MBG 8 A1MBG C02 C9 C 0 1 Y N N N N N 10.961 -15.339 37.230 -11.338 -1.539 0.459 C02 A1MBG 9 A1MBG C05 C10 C 0 1 Y N N N N N 9.297 -15.847 38.764 -9.068 -1.149 0.600 C05 A1MBG 10 A1MBG C06 C11 C 0 1 Y N N N N N 10.036 -15.355 39.833 -9.239 0.171 0.169 C06 A1MBG 11 A1MBG C07 C12 C 0 1 N N N N N N 9.402 -15.375 41.159 -8.081 1.063 0.022 C07 A1MBG 12 A1MBG C08 C13 C 0 1 N N N N N N 9.685 -14.441 42.136 -6.840 0.611 0.303 C08 A1MBG 13 A1MBG C09 C14 C 0 1 N N N N N N 8.869 -14.486 43.400 -5.688 1.499 0.157 C09 A1MBG 14 A1MBG C12 C15 C 0 1 N N N N N N 9.954 -12.577 44.830 -3.295 1.937 0.291 C12 A1MBG 15 A1MBG C16 C16 C 0 1 Y N N N N N 7.155 -9.905 48.076 0.449 -0.917 -0.967 C16 A1MBG 16 A1MBG C18 C17 C 0 1 Y N N N N N 7.578 -8.993 49.008 1.823 -0.817 -0.969 C18 A1MBG 17 A1MBG C19 C18 C 0 1 Y N N N N N 8.884 -8.458 48.957 2.446 0.307 -0.428 C19 A1MBG 18 A1MBG C23 C19 C 0 1 Y N N N N N 10.266 -5.617 51.880 6.689 0.624 -0.445 C23 A1MBG 19 A1MBG C27 C20 C 0 1 N N N N N N 13.343 -4.548 52.056 8.296 -1.553 0.426 C27 A1MBG 20 A1MBG C30 C21 C 0 1 N N N N N N 14.071 -3.754 54.674 10.824 -0.579 1.489 C30 A1MBG 21 A1MBG C31 C22 C 0 1 N N N N N N 12.848 -3.227 53.986 10.379 -0.168 0.082 C31 A1MBG 22 A1MBG C32 C23 C 0 1 Y N N N N N 11.129 -6.549 51.262 6.070 -0.508 -0.982 C32 A1MBG 23 A1MBG C33 C24 C 0 1 Y N N N N N 10.689 -7.434 50.332 4.697 -0.607 -0.981 C33 A1MBG 24 A1MBG C34 C25 C 0 1 Y N N N N N 9.803 -8.852 47.908 1.667 1.328 0.119 C34 A1MBG 25 A1MBG C35 C26 C 0 1 Y N N N N N 9.393 -9.753 46.975 0.296 1.219 0.120 C35 A1MBG 26 A1MBG C36 C27 C 0 1 N N N N N N 10.163 -10.292 45.835 -0.795 2.130 0.647 C36 A1MBG 27 A1MBG C37 C28 C 0 1 Y N N N N N 11.301 -14.805 39.600 -10.534 0.627 -0.132 C37 A1MBG 28 A1MBG N03 N1 N 0 1 N N N N N N 11.444 -15.341 35.832 -12.398 -2.418 0.613 N03 A1MBG 29 A1MBG N04 N2 N 0 1 Y N N N N N 9.753 -15.840 37.468 -10.106 -1.948 0.731 N04 A1MBG 30 A1MBG N11 N3 N 0 1 N N N N N N 8.994 -13.601 44.629 -4.449 1.048 0.438 N11 A1MBG 31 A1MBG N26 N4 N 0 1 N N N N N N 12.265 -4.170 52.985 8.915 -0.288 0.001 N26 A1MBG 32 A1MBG N29 N5 N 0 1 N N N N N N 15.000 -4.555 53.876 10.292 -1.913 1.798 N29 A1MBG 33 A1MBG O10 O1 O 0 1 N N N N N N 7.965 -15.225 43.412 -5.847 2.646 -0.219 O10 A1MBG 34 A1MBG O14 O2 O 0 1 N N N N N N 7.992 -11.274 45.838 -1.686 0.208 -0.331 O14 A1MBG 35 A1MBG O25 O3 O 0 1 N N N N N N 10.099 -4.180 53.822 8.694 1.746 -0.863 O25 A1MBG 36 A1MBG CL17 CL1 CL 0 0 N N N N N N 5.491 -10.461 48.322 -0.315 -2.322 -1.642 CL17 A1MBG 37 A1MBG H131 H1 H 0 0 N N N N N N 9.040 -10.779 44.113 -2.125 0.715 1.649 H131 A1MBG 38 A1MBG H211 H2 H 0 0 N N N N N N 7.366 -6.557 50.354 3.941 2.342 0.524 H211 A1MBG 39 A1MBG H221 H3 H 0 0 N N N N N N 8.206 -4.919 52.012 6.390 2.526 0.514 H221 A1MBG 40 A1MBG H281 H4 H 0 0 N N N N N N 14.059 -6.251 53.099 8.472 -1.170 2.541 H281 A1MBG 41 A1MBG H282 H5 H 0 0 N N N N N N 15.255 -5.466 52.013 8.460 -2.896 2.105 H282 A1MBG 42 A1MBG H011 H6 H 0 0 N N N N N N 12.737 -14.413 38.021 -12.590 0.080 -0.203 H011 A1MBG 43 A1MBG H051 H7 H 0 0 N N N N N N 8.317 -16.255 38.962 -8.078 -1.514 0.829 H051 A1MBG 44 A1MBG H071 H8 H 0 0 N N N N N N 8.685 -16.152 41.378 -8.222 2.081 -0.312 H071 A1MBG 45 A1MBG H081 H9 H 0 0 N N N N N N 10.463 -13.705 41.998 -6.699 -0.407 0.637 H081 A1MBG 46 A1MBG H121 H10 H 0 0 N N N N N N 10.584 -12.833 45.695 -3.415 2.800 0.946 H121 A1MBG 47 A1MBG H122 H11 H 0 0 N N N N N N 10.583 -12.487 43.932 -3.224 2.273 -0.743 H122 A1MBG 48 A1MBG H181 H12 H 0 0 N N N N N N 6.904 -8.680 49.791 2.420 -1.613 -1.391 H181 A1MBG 49 A1MBG H271 H13 H 0 0 N N N N N N 12.922 -5.191 51.269 8.558 -2.343 -0.277 H271 A1MBG 50 A1MBG H272 H14 H 0 0 N N N N N N 13.755 -3.635 51.602 7.213 -1.436 0.463 H272 A1MBG 51 A1MBG H301 H15 H 0 0 N N N N N N 13.734 -4.379 55.514 11.913 -0.602 1.534 H301 A1MBG 52 A1MBG H302 H16 H 0 0 N N N N N N 14.630 -2.889 55.062 10.446 0.141 2.215 H302 A1MBG 53 A1MBG H311 H17 H 0 0 N N N N N N 12.085 -3.016 54.749 10.673 0.864 -0.109 H311 A1MBG 54 A1MBG H312 H18 H 0 0 N N N N N N 13.116 -2.294 53.468 10.844 -0.824 -0.655 H312 A1MBG 55 A1MBG H321 H19 H 0 0 N N N N N N 12.173 -6.558 51.539 6.668 -1.302 -1.403 H321 A1MBG 56 A1MBG H331 H20 H 0 0 N N N N N N 11.373 -8.125 49.861 4.219 -1.480 -1.401 H331 A1MBG 57 A1MBG H341 H21 H 0 0 N N N N N N 10.799 -8.436 47.868 2.140 2.203 0.541 H341 A1MBG 58 A1MBG H361 H22 H 0 0 N N N N N N 10.482 -9.474 45.173 -0.964 2.968 -0.030 H361 A1MBG 59 A1MBG H362 H23 H 0 0 N N N N N N 11.047 -10.836 46.199 -0.557 2.484 1.650 H362 A1MBG 60 A1MBG H371 H24 H 0 0 N N N N N N 11.897 -14.394 40.401 -10.697 1.638 -0.475 H371 A1MBG 61 A1MBG H031 H25 H 0 0 N N N N N N 10.747 -15.744 35.239 -13.302 -2.127 0.416 H031 A1MBG 62 A1MBG H032 H26 H 0 0 N N N N N N 11.627 -14.402 35.541 -12.236 -3.325 0.918 H032 A1MBG 63 A1MBG H111 H27 H 0 0 N N N N N N 8.336 -13.756 45.366 -4.322 0.134 0.737 H111 A1MBG 64 A1MBG H1 H28 H 0 1 N N N N N N 15.422 -5.224 54.488 10.666 -2.258 2.670 H1 A1MBG 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MBG C02 C01 DOUB Y N 1 A1MBG N03 C02 SING N N 2 A1MBG N04 C02 SING Y N 3 A1MBG C05 N04 DOUB Y N 4 A1MBG C06 C05 SING Y N 5 A1MBG C08 C07 DOUB N E 6 A1MBG C09 C08 SING N N 7 A1MBG O10 C09 DOUB N N 8 A1MBG N11 C09 SING N N 9 A1MBG C12 N11 SING N N 10 A1MBG C13 C12 SING N N 11 A1MBG O14 C13 SING N N 12 A1MBG C15 O14 SING N N 13 A1MBG C16 C15 DOUB Y N 14 A1MBG CL17 C16 SING N N 15 A1MBG C18 C16 SING Y N 16 A1MBG C19 C18 DOUB Y N 17 A1MBG C21 C20 DOUB Y N 18 A1MBG C22 C21 SING Y N 19 A1MBG C23 C22 DOUB Y N 20 A1MBG O25 C24 DOUB N N 21 A1MBG N26 C24 SING N N 22 A1MBG C27 N26 SING N N 23 A1MBG C28 C27 SING N N 24 A1MBG N29 C28 SING N N 25 A1MBG C30 N29 SING N N 26 A1MBG C31 C30 SING N N 27 A1MBG C24 C23 SING N N 28 A1MBG C32 C23 SING Y N 29 A1MBG C33 C32 DOUB Y N 30 A1MBG C20 C19 SING N N 31 A1MBG C34 C19 SING Y N 32 A1MBG C35 C34 DOUB Y N 33 A1MBG C36 C35 SING N N 34 A1MBG C07 C06 SING N N 35 A1MBG C37 C06 DOUB Y N 36 A1MBG C01 C37 SING Y N 37 A1MBG C13 C36 SING N N 38 A1MBG C15 C35 SING Y N 39 A1MBG C20 C33 SING Y N 40 A1MBG N26 C31 SING N N 41 A1MBG C13 H131 SING N N 42 A1MBG C21 H211 SING N N 43 A1MBG C22 H221 SING N N 44 A1MBG C28 H281 SING N N 45 A1MBG C28 H282 SING N N 46 A1MBG C01 H011 SING N N 47 A1MBG C05 H051 SING N N 48 A1MBG C07 H071 SING N N 49 A1MBG C08 H081 SING N N 50 A1MBG C12 H121 SING N N 51 A1MBG C12 H122 SING N N 52 A1MBG C18 H181 SING N N 53 A1MBG C27 H271 SING N N 54 A1MBG C27 H272 SING N N 55 A1MBG C30 H301 SING N N 56 A1MBG C30 H302 SING N N 57 A1MBG C31 H311 SING N N 58 A1MBG C31 H312 SING N N 59 A1MBG C32 H321 SING N N 60 A1MBG C33 H331 SING N N 61 A1MBG C34 H341 SING N N 62 A1MBG C36 H361 SING N N 63 A1MBG C36 H362 SING N N 64 A1MBG C37 H371 SING N N 65 A1MBG N03 H031 SING N N 66 A1MBG N03 H032 SING N N 67 A1MBG N11 H111 SING N N 68 A1MBG N29 H1 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MBG InChI InChI 1.06 "InChI=1S/C28H28ClN5O3/c29-24-15-21(19-3-5-20(6-4-19)28(36)34-11-9-31-10-12-34)13-22-14-23(37-27(22)24)17-33-26(35)8-2-18-1-7-25(30)32-16-18/h1-8,13,15-16,23,31H,9-12,14,17H2,(H2,30,32)(H,33,35)/b8-2+/t23-/m0/s1" A1MBG InChIKey InChI 1.06 VDACSASREQBHAZ-AJYURUAUSA-N A1MBG SMILES_CANONICAL CACTVS 3.385 "Nc1ccc(/C=C/C(=O)NC[C@@H]2Cc3cc(cc(Cl)c3O2)c4ccc(cc4)C(=O)N5CCNCC5)cn1" A1MBG SMILES CACTVS 3.385 "Nc1ccc(C=CC(=O)NC[CH]2Cc3cc(cc(Cl)c3O2)c4ccc(cc4)C(=O)N5CCNCC5)cn1" A1MBG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc3c(c(c2)Cl)O[C@@H](C3)CNC(=O)/C=C/c4ccc(nc4)N)C(=O)N5CCNCC5" A1MBG SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2cc3c(c(c2)Cl)OC(C3)CNC(=O)C=Cc4ccc(nc4)N)C(=O)N5CCNCC5" # _pdbx_chem_comp_identifier.comp_id A1MBG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-3-(6-azanylpyridin-3-yl)-~{N}-[[(2~{S})-7-chloranyl-5-(4-piperazin-1-ylcarbonylphenyl)-2,3-dihydro-1-benzofuran-2-yl]methyl]prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MBG "Create component" 2025-08-20 PDBJ A1MBG "Modify descriptor" 2025-10-10 PDBJ A1MBG "Initial release" 2026-07-29 RCSB #