data_A1MBI # _chem_comp.id A1MBI _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanyl-5-ethynyl-pyrrolo[2,3-d]pyrimidin-7-yl)-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]thiolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N7 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-26 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MBI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 9WGW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MBI C14 C1 C 0 1 Y N N N N N 12.495 10.959 13.313 ? ? ? C14 A1MBI 1 A1MBI C13 C2 C 0 1 Y N N N N N 12.554 11.972 12.361 ? ? ? C13 A1MBI 2 A1MBI C04 C3 C 0 1 N N N N N N 10.886 13.846 9.378 ? ? ? C04 A1MBI 3 A1MBI C05 C4 C 0 1 N N R N N N 12.458 14.222 9.477 ? ? ? C05 A1MBI 4 A1MBI C07 C5 C 0 1 N N R N N N 14.202 13.738 11.586 ? ? ? C07 A1MBI 5 A1MBI C08 C6 C 0 1 N N R N N N 14.738 13.235 10.405 ? ? ? C08 A1MBI 6 A1MBI C09 C7 C 0 1 N N S N N N 13.282 13.074 9.244 ? ? ? C09 A1MBI 7 A1MBI C15 C8 C 0 1 N N N N N N 11.324 10.011 13.566 ? ? ? C15 A1MBI 8 A1MBI C16 C9 C 0 1 N N N N N N 10.415 9.275 13.765 ? ? ? C16 A1MBI 9 A1MBI C17 C10 C 0 1 Y N N N N N 13.735 10.973 14.009 ? ? ? C17 A1MBI 10 A1MBI C18 C11 C 0 1 Y N N N N N 14.469 11.982 13.446 ? ? ? C18 A1MBI 11 A1MBI C20 C12 C 0 1 Y N N N N N 16.227 11.519 14.902 ? ? ? C20 A1MBI 12 A1MBI C22 C13 C 0 1 Y N N N N N 14.318 10.230 15.065 ? ? ? C22 A1MBI 13 A1MBI N01 N1 N 0 1 N N N N N N 10.772 12.805 6.106 ? ? ? N01 A1MBI 14 A1MBI N02 N2 N 0 1 N N N N N N 11.010 13.467 7.097 ? ? ? N02 A1MBI 15 A1MBI N03 N3 N 0 1 N N N N N N 10.617 13.080 8.177 ? ? ? N03 A1MBI 16 A1MBI N12 N4 N 0 1 Y N N N N N 13.731 12.568 12.461 ? ? ? N12 A1MBI 17 A1MBI N19 N5 N 0 1 Y N N N N N 15.721 12.238 13.913 ? ? ? N19 A1MBI 18 A1MBI N21 N6 N 0 1 Y N N N N N 15.547 10.528 15.477 ? ? ? N21 A1MBI 19 A1MBI N23 N7 N 0 1 N N N N N N 13.577 9.150 15.692 ? ? ? N23 A1MBI 20 A1MBI O10 O1 O 0 1 N N N N N N 13.673 13.065 8.051 ? ? ? O10 A1MBI 21 A1MBI O11 O2 O 0 1 N N N N N N 15.602 14.049 9.922 ? ? ? O11 A1MBI 22 A1MBI S06 S1 S 0 1 N N N N N N 12.823 14.738 11.079 ? ? ? S06 A1MBI 23 A1MBI H131 H1 H 0 0 N N N N N N 11.773 12.228 11.660 ? ? ? H131 A1MBI 24 A1MBI H041 H2 H 0 0 N N N N N N 10.294 14.773 9.355 ? ? ? H041 A1MBI 25 A1MBI H042 H3 H 0 0 N N N N N N 10.601 13.250 10.258 ? ? ? H042 A1MBI 26 A1MBI H051 H4 H 0 0 N N N N N N 12.685 15.047 8.786 ? ? ? H051 A1MBI 27 A1MBI H071 H5 H 0 0 N N N N N N 14.902 14.382 12.138 ? ? ? H071 A1MBI 28 A1MBI H081 H6 H 0 0 N N N N N N 15.127 12.215 10.541 ? ? ? H081 A1MBI 29 A1MBI H091 H7 H 0 0 N N N N N N 12.761 12.154 9.546 ? ? ? H091 A1MBI 30 A1MBI H161 H8 H 0 0 N N N N N N 9.603 8.617 13.943 ? ? ? H161 A1MBI 31 A1MBI H201 H9 H 0 0 N N N N N N 17.223 11.743 15.254 ? ? ? H201 A1MBI 32 A1MBI H011 H10 H 0 0 N N N N N N 10.252 11.979 6.323 ? ? ? H011 A1MBI 33 A1MBI H231 H11 H 0 0 N N N N N N 14.134 8.737 16.412 ? ? ? H231 A1MBI 34 A1MBI H232 H12 H 0 0 N N N N N N 12.734 9.511 16.090 ? ? ? H232 A1MBI 35 A1MBI H101 H13 H 0 0 N N N N N N 12.924 12.983 7.472 ? ? ? H101 A1MBI 36 A1MBI H111 H14 H 0 0 N N N N N N 16.337 14.123 10.520 ? ? ? H111 A1MBI 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MBI N02 N01 DOUB N N 1 A1MBI N03 N02 DOUB N N 2 A1MBI C04 N03 SING N N 3 A1MBI C05 C04 SING N N 4 A1MBI S06 C05 SING N N 5 A1MBI C07 S06 SING N N 6 A1MBI O10 C09 SING N N 7 A1MBI C09 C08 SING N N 8 A1MBI O11 C08 SING N N 9 A1MBI C08 C07 SING N N 10 A1MBI N12 C07 SING N N 11 A1MBI C13 N12 SING Y N 12 A1MBI C14 C13 DOUB Y N 13 A1MBI C16 C15 TRIP N N 14 A1MBI C15 C14 SING N N 15 A1MBI C17 C14 SING Y N 16 A1MBI C18 C17 DOUB Y N 17 A1MBI N19 C18 SING Y N 18 A1MBI C20 N19 DOUB Y N 19 A1MBI N21 C20 SING Y N 20 A1MBI C22 N21 DOUB Y N 21 A1MBI N23 C22 SING N N 22 A1MBI C05 C09 SING N N 23 A1MBI N12 C18 SING Y N 24 A1MBI C17 C22 SING Y N 25 A1MBI C13 H131 SING N N 26 A1MBI C04 H041 SING N N 27 A1MBI C04 H042 SING N N 28 A1MBI C05 H051 SING N N 29 A1MBI C07 H071 SING N N 30 A1MBI C08 H081 SING N N 31 A1MBI C09 H091 SING N N 32 A1MBI C16 H161 SING N N 33 A1MBI C20 H201 SING N N 34 A1MBI N01 H011 SING N N 35 A1MBI N23 H231 SING N N 36 A1MBI N23 H232 SING N N 37 A1MBI O10 H101 SING N N 38 A1MBI O11 H111 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MBI InChI InChI 1.06 "InChI=1S/C13H14N7O2S/c1-2-6-4-20(12-8(6)11(14)16-5-17-12)13-10(22)9(21)7(23-13)3-18-19-15/h1,4-5,7,9-10,13,15,21-22H,3H2,(H2,14,16,17)/t7-,9-,10-,13-/m1/s1" A1MBI InChIKey InChI 1.06 SWJQLMXHXWDGJB-QYVSTXNMSA-N A1MBI SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cc(C#C)c12)[C@@H]3S[C@H](CN=[N]=N)[C@@H](O)[C@H]3O" A1MBI SMILES CACTVS 3.385 "Nc1ncnc2n(cc(C#C)c12)[CH]3S[CH](CN=[N]=N)[CH](O)[CH]3O" A1MBI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#Cc1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](S3)CN=[N]=N)O)O" A1MBI SMILES "OpenEye OEToolkits" 2.0.7 "C#Cc1cn(c2c1c(ncn2)N)C3C(C(C(S3)CN=[N]=N)O)O" # _pdbx_chem_comp_identifier.comp_id A1MBI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanyl-5-ethynyl-pyrrolo[2,3-d]pyrimidin-7-yl)-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]thiolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MBI "Create component" 2025-08-26 PDBJ A1MBI "Initial release" 2026-04-01 RCSB #