data_A1MBJ # _chem_comp.id A1MBJ _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]-5-(hydroxymethyl)oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-26 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MBJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WFK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MBJ C10 C1 C 0 1 Y N N N N N -17.478 -43.821 11.607 1.141 0.302 0.217 C10 A1MBJ 1 A1MBJ C13 C2 C 0 1 Y N N N N N -14.152 -43.297 11.441 -1.907 0.945 0.859 C13 A1MBJ 2 A1MBJ C15 C3 C 0 1 Y N N N N N -13.312 -42.015 9.644 -3.817 0.254 -0.345 C15 A1MBJ 3 A1MBJ C17 C4 C 0 1 Y N N N N N -10.752 -43.010 9.741 -5.486 2.203 0.726 C17 A1MBJ 4 A1MBJ C20 C5 C 0 1 N N N N N N -11.849 -39.773 7.279 -7.039 -0.437 -1.978 C20 A1MBJ 5 A1MBJ C21 C6 C 0 1 N N N N N N -9.308 -43.484 9.712 -6.396 3.256 1.306 C21 A1MBJ 6 A1MBJ C01 C7 C 0 1 N N R N N N -20.537 -45.603 10.727 4.891 1.975 0.037 C01 A1MBJ 7 A1MBJ C02 C8 C 0 1 N N R N N N -19.761 -44.361 12.567 3.639 0.073 0.334 C02 A1MBJ 8 A1MBJ C03 C9 C 0 1 N N S N N N -20.675 -44.137 10.487 5.074 1.195 -1.284 C03 A1MBJ 9 A1MBJ C04 C10 C 0 1 N N R N N N -20.816 -43.626 11.836 4.232 -0.084 -1.084 C04 A1MBJ 10 A1MBJ C05 C11 C 0 1 N N N N N N -19.819 -46.259 9.595 4.812 3.478 -0.238 C05 A1MBJ 11 A1MBJ C06 C12 C 0 1 Y N N N N N -18.788 -40.682 14.635 2.051 -4.030 0.972 C06 A1MBJ 12 A1MBJ C07 C13 C 0 1 Y N N N N N -18.465 -42.389 13.218 1.944 -1.764 0.582 C07 A1MBJ 13 A1MBJ C08 C14 C 0 1 Y N N N N N -17.158 -41.862 12.844 0.542 -1.857 0.560 C08 A1MBJ 14 A1MBJ C09 C15 C 0 1 Y N N N N N -16.803 -40.676 13.474 -0.054 -3.109 0.758 C09 A1MBJ 15 A1MBJ C11 C16 C 0 1 Y N N N N N -16.651 -42.794 11.875 0.046 -0.496 0.314 C11 A1MBJ 16 A1MBJ C12 C17 C 0 1 Y N N N N N -15.300 -42.630 11.181 -1.366 -0.077 0.195 C12 A1MBJ 17 A1MBJ C14 C18 C 0 1 Y N N N N N -12.946 -43.015 10.655 -3.314 1.169 0.582 C14 A1MBJ 18 A1MBJ C16 C19 C 0 1 Y N N N N N -11.673 -43.506 10.677 -4.183 2.151 1.113 C16 A1MBJ 19 A1MBJ C18 C20 C 0 1 Y N N N N N -11.152 -42.032 8.796 -5.987 1.293 -0.195 C18 A1MBJ 20 A1MBJ C19 C21 C 0 1 Y N N N N N -12.452 -41.526 8.737 -5.163 0.326 -0.732 C19 A1MBJ 21 A1MBJ N01 N1 N 0 1 Y N N N N N -17.608 -40.116 14.366 0.736 -4.160 0.959 N01 A1MBJ 22 A1MBJ N02 N2 N 0 1 Y N N N N N -19.261 -41.822 14.104 2.652 -2.874 0.791 N02 A1MBJ 23 A1MBJ N03 N3 N 0 1 Y N N N N N -18.571 -43.582 12.425 2.272 -0.451 0.376 N03 A1MBJ 24 A1MBJ N04 N4 N 0 1 N N N N N N -15.523 -40.028 13.188 -1.430 -3.249 0.745 N04 A1MBJ 25 A1MBJ O01 O1 O 0 1 N N N N N N -19.723 -45.719 11.970 3.640 1.497 0.577 O01 A1MBJ 26 A1MBJ O02 O2 O 0 1 N N N N N N -21.854 -43.785 9.731 6.450 0.864 -1.483 O02 A1MBJ 27 A1MBJ O03 O3 O 0 1 N N N N N N -22.120 -43.994 12.335 5.062 -1.246 -1.154 O03 A1MBJ 28 A1MBJ O04 O4 O 0 1 N N N N N N -18.565 -46.715 10.039 4.760 4.187 1.001 O04 A1MBJ 29 A1MBJ O05 O5 O 0 1 N N N N N N -12.876 -40.568 7.823 -5.660 -0.568 -1.629 O05 A1MBJ 30 A1MBJ S01 S1 S 0 1 Y N N N N N -15.014 -41.574 9.851 -2.547 -0.859 -0.837 S01 A1MBJ 31 A1MBJ H11 H1 H 0 1 N N N N N N -17.326 -44.638 10.918 1.122 1.366 0.037 H11 A1MBJ 32 A1MBJ H14 H2 H 0 1 N N N N N N -14.124 -44.037 12.227 -1.345 1.554 1.552 H14 A1MBJ 33 A1MBJ H17 H3 H 0 1 N N N N N N -12.280 -39.050 6.571 -7.652 -0.548 -1.084 H17 A1MBJ 34 A1MBJ H18 H4 H 0 1 N N N N N N -11.336 -39.233 8.088 -7.211 0.546 -2.418 H18 A1MBJ 35 A1MBJ H19 H5 H 0 1 N N N N N N -11.128 -40.416 6.752 -7.306 -1.209 -2.700 H19 A1MBJ 36 A1MBJ H20 H6 H 0 1 N N N N N N -9.220 -44.352 9.042 -6.865 2.872 2.211 H20 A1MBJ 37 A1MBJ H21 H7 H 0 1 N N N N N N -8.663 -42.672 9.346 -5.814 4.145 1.547 H21 A1MBJ 38 A1MBJ H22 H8 H 0 1 N N N N N N -8.996 -43.771 10.727 -7.165 3.512 0.577 H22 A1MBJ 39 A1MBJ H01 H9 H 0 1 N N N N N N -21.526 -46.063 10.871 5.710 1.758 0.723 H01 A1MBJ 40 A1MBJ H02 H10 H 0 1 N N N N N N -20.038 -44.438 13.629 4.266 -0.437 1.065 H02 A1MBJ 41 A1MBJ H03 H11 H 0 1 N N N N N N -19.767 -43.741 10.009 4.694 1.775 -2.125 H03 A1MBJ 42 A1MBJ H04 H12 H 0 1 N N N N N N -20.651 -42.539 11.881 3.436 -0.138 -1.827 H04 A1MBJ 43 A1MBJ H07 H13 H 0 1 N N N N N N -20.411 -47.111 9.229 5.693 3.791 -0.799 H07 A1MBJ 44 A1MBJ H08 H14 H 0 1 N N N N N N -19.678 -45.534 8.780 3.915 3.695 -0.819 H08 A1MBJ 45 A1MBJ H10 H15 H 0 1 N N N N N N -19.422 -40.175 15.347 2.656 -4.909 1.138 H10 A1MBJ 46 A1MBJ H15 H16 H 0 1 N N N N N N -11.382 -44.257 11.396 -3.809 2.866 1.831 H15 A1MBJ 47 A1MBJ H16 H17 H 0 1 N N N N N N -10.421 -41.663 8.092 -7.024 1.343 -0.493 H16 A1MBJ 48 A1MBJ H12 H18 H 0 1 N N N N N N -15.436 -39.202 13.744 -1.995 -2.474 0.598 H12 A1MBJ 49 A1MBJ H13 H19 H 0 1 N N N N N N -14.776 -40.656 13.405 -1.830 -4.122 0.883 H13 A1MBJ 50 A1MBJ H05 H20 H 0 1 N N N N N N -21.885 -42.843 9.612 7.033 1.632 -1.554 H05 A1MBJ 51 A1MBJ H06 H21 H 0 1 N N N N N N -22.788 -43.516 11.858 5.460 -1.393 -2.023 H06 A1MBJ 52 A1MBJ H09 H22 H 0 1 N N N N N N -18.107 -47.133 9.319 4.709 5.148 0.903 H09 A1MBJ 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MBJ N01 C06 SING Y N 1 A1MBJ N01 C09 DOUB Y N 2 A1MBJ N02 C07 SING Y N 3 A1MBJ N02 C06 DOUB Y N 4 A1MBJ N03 C10 SING Y N 5 A1MBJ N03 C02 SING N N 6 A1MBJ N03 C07 SING Y N 7 A1MBJ N04 C09 SING N N 8 A1MBJ C01 C03 SING N N 9 A1MBJ C01 C05 SING N N 10 A1MBJ C01 O01 SING N N 11 A1MBJ C02 C04 SING N N 12 A1MBJ C02 O01 SING N N 13 A1MBJ C03 C04 SING N N 14 A1MBJ C03 O02 SING N N 15 A1MBJ C04 O03 SING N N 16 A1MBJ C05 O04 SING N N 17 A1MBJ C07 C08 DOUB Y N 18 A1MBJ C08 C09 SING Y N 19 A1MBJ C08 C11 SING Y N 20 A1MBJ C10 C11 DOUB Y N 21 A1MBJ C11 C12 SING N N 22 A1MBJ C12 C13 DOUB Y N 23 A1MBJ C12 S01 SING Y N 24 A1MBJ C13 C14 SING Y N 25 A1MBJ C14 C15 DOUB Y N 26 A1MBJ C14 C16 SING Y N 27 A1MBJ C15 C19 SING Y N 28 A1MBJ C15 S01 SING Y N 29 A1MBJ C16 C17 DOUB Y N 30 A1MBJ C17 C18 SING Y N 31 A1MBJ C17 C21 SING N N 32 A1MBJ C18 C19 DOUB Y N 33 A1MBJ C19 O05 SING N N 34 A1MBJ C20 O05 SING N N 35 A1MBJ C10 H11 SING N N 36 A1MBJ C13 H14 SING N N 37 A1MBJ C20 H17 SING N N 38 A1MBJ C20 H18 SING N N 39 A1MBJ C20 H19 SING N N 40 A1MBJ C21 H20 SING N N 41 A1MBJ C21 H21 SING N N 42 A1MBJ C21 H22 SING N N 43 A1MBJ C01 H01 SING N N 44 A1MBJ C02 H02 SING N N 45 A1MBJ C03 H03 SING N N 46 A1MBJ C04 H04 SING N N 47 A1MBJ C05 H07 SING N N 48 A1MBJ C05 H08 SING N N 49 A1MBJ C06 H10 SING N N 50 A1MBJ C16 H15 SING N N 51 A1MBJ C18 H16 SING N N 52 A1MBJ N04 H12 SING N N 53 A1MBJ N04 H13 SING N N 54 A1MBJ O02 H05 SING N N 55 A1MBJ O03 H06 SING N N 56 A1MBJ O04 H09 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MBJ InChI InChI 1.06 "InChI=1S/C21H22N4O5S/c1-9-3-10-5-14(31-18(10)12(4-9)29-2)11-6-25(20-15(11)19(22)23-8-24-20)21-17(28)16(27)13(7-26)30-21/h3-6,8,13,16-17,21,26-28H,7H2,1-2H3,(H2,22,23,24)/t13-,16-,17-,21-/m1/s1" A1MBJ InChIKey InChI 1.06 ABQUBKHJAWASBM-TXRZWFJJSA-N A1MBJ SMILES_CANONICAL CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([C@@H]4O[C@H](CO)[C@@H](O)[C@H]4O)c5ncnc(N)c35" A1MBJ SMILES CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([CH]4O[CH](CO)[CH](O)[CH]4O)c5ncnc(N)c35" A1MBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CO)O)O" A1MBJ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)C5C(C(C(O5)CO)O)O" # _pdbx_chem_comp_identifier.comp_id A1MBJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MBJ "Create component" 2025-08-26 PDBJ A1MBJ "Initial release" 2026-08-26 RCSB #