data_A1MBK # _chem_comp.id A1MBK _chem_comp.name "(2~{R},3~{S},4~{R},5~{R})-2-(aminomethyl)-5-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-08-26 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MBK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MBK C10 C1 C 0 1 Y N N N N N -17.504 -43.652 11.649 1.153 0.321 0.218 C10 A1MBK 1 A1MBK C13 C2 C 0 1 Y N N N N N -14.155 -43.172 11.517 -1.900 0.947 0.858 C13 A1MBK 2 A1MBK C15 C3 C 0 1 Y N N N N N -13.293 -41.881 9.810 -3.805 0.243 -0.347 C15 A1MBK 3 A1MBK C17 C4 C 0 1 Y N N N N N -10.755 -42.886 9.874 -5.487 2.183 0.721 C17 A1MBK 4 A1MBK C20 C5 C 0 1 N N N N N N -11.793 -39.664 7.443 -7.022 -0.469 -1.981 C20 A1MBK 5 A1MBK C21 C6 C 0 1 N N N N N N -9.333 -43.435 9.898 -6.403 3.230 1.300 C21 A1MBK 6 A1MBK C01 C7 C 0 1 N N R N N N -20.368 -45.231 10.435 4.892 2.016 0.040 C01 A1MBK 7 A1MBK C02 C8 C 0 1 N N R N N N -19.741 -44.203 12.491 3.652 0.108 0.338 C02 A1MBK 8 A1MBK C03 C9 C 0 1 N N S N N N -20.747 -43.798 10.410 5.082 1.235 -1.280 C03 A1MBK 9 A1MBK C04 C10 C 0 1 N N R N N N -20.809 -43.421 11.816 4.247 -0.049 -1.079 C04 A1MBK 10 A1MBK C05 C11 C 0 1 N N N N N N -19.588 -45.600 9.227 4.805 3.518 -0.238 C05 A1MBK 11 A1MBK C06 C12 C 0 1 Y N N N N N -18.748 -40.607 14.708 2.086 -4.004 0.981 C06 A1MBK 12 A1MBK C07 C13 C 0 1 Y N N N N N -18.422 -42.232 13.275 1.968 -1.740 0.588 C07 A1MBK 13 A1MBK C08 C14 C 0 1 Y N N N N N -17.136 -41.721 12.933 0.566 -1.840 0.564 C08 A1MBK 14 A1MBK C09 C15 C 0 1 Y N N N N N -16.746 -40.592 13.572 -0.023 -3.096 0.762 C09 A1MBK 15 A1MBK C11 C16 C 0 1 Y N N N N N -16.639 -42.654 11.940 0.062 -0.483 0.315 C11 A1MBK 16 A1MBK C12 C17 C 0 1 Y N N N N N -15.283 -42.508 11.257 -1.352 -0.073 0.195 C12 A1MBK 17 A1MBK C14 C18 C 0 1 Y N N N N N -12.999 -42.906 10.776 -3.308 1.163 0.580 C14 A1MBK 18 A1MBK C16 C19 C 0 1 Y N N N N N -11.696 -43.397 10.784 -4.183 2.140 1.109 C16 A1MBK 19 A1MBK C18 C20 C 0 1 Y N N N N N -11.102 -41.886 8.948 -5.982 1.270 -0.199 C18 A1MBK 20 A1MBK C19 C21 C 0 1 Y N N N N N -12.392 -41.387 8.927 -5.151 0.306 -0.735 C19 A1MBK 21 A1MBK N01 N1 N 0 1 N N N N N N -19.305 -47.021 9.298 4.746 4.249 1.035 N01 A1MBK 22 A1MBK N02 N2 N 0 1 Y N N N N N -17.543 -40.018 14.468 0.773 -4.142 0.966 N02 A1MBK 23 A1MBK N03 N3 N 0 1 Y N N N N N -19.273 -41.728 14.143 2.681 -2.845 0.800 N03 A1MBK 24 A1MBK N04 N4 N 0 1 Y N N N N N -18.574 -43.405 12.468 2.288 -0.425 0.380 N04 A1MBK 25 A1MBK N05 N5 N 0 1 N N N N N N -15.451 -40.002 13.276 -1.398 -3.244 0.748 N05 A1MBK 26 A1MBK O01 O1 O 0 1 N N N N N N -19.541 -45.440 11.667 3.644 1.531 0.579 O01 A1MBK 27 A1MBK O02 O2 O 0 1 N N N N N N -22.050 -43.652 9.786 6.459 0.911 -1.477 O02 A1MBK 28 A1MBK O03 O3 O 0 1 N N N N N N -22.106 -43.776 12.365 5.084 -1.206 -1.146 O03 A1MBK 29 A1MBK O04 O4 O 0 1 N N N N N N -12.831 -40.393 8.048 -5.642 -0.590 -1.631 O04 A1MBK 30 A1MBK S01 S1 S 0 1 Y N N N N N -15.043 -41.355 9.951 -2.528 -0.863 -0.837 S01 A1MBK 31 A1MBK H12 H1 H 0 1 N N N N N N -17.380 -44.455 10.938 1.128 1.385 0.036 H12 A1MBK 32 A1MBK H15 H2 H 0 1 N N N N N N -14.135 -43.915 12.300 -1.342 1.560 1.549 H15 A1MBK 33 A1MBK H18 H3 H 0 1 N N N N N N -12.220 -38.906 6.770 -7.283 -1.243 -2.702 H18 A1MBK 34 A1MBK H19 H4 H 0 1 N N N N N N -11.193 -39.168 8.220 -7.635 -0.582 -1.087 H19 A1MBK 35 A1MBK H20 H5 H 0 1 N N N N N N -11.153 -40.348 6.866 -7.200 0.513 -2.422 H20 A1MBK 36 A1MBK H21 H6 H 0 1 N N N N N N -9.260 -44.296 9.217 -6.870 2.844 2.206 H21 A1MBK 37 A1MBK H22 H7 H 0 1 N N N N N N -8.632 -42.651 9.575 -5.827 4.124 1.541 H22 A1MBK 38 A1MBK H23 H8 H 0 1 N N N N N N -9.080 -43.754 10.920 -7.174 3.481 0.572 H23 A1MBK 39 A1MBK H01 H9 H 0 1 N N N N N N -21.274 -45.852 10.493 5.712 1.805 0.726 H01 A1MBK 40 A1MBK H02 H10 H 0 1 N N N N N N -20.038 -44.466 13.517 4.280 -0.398 1.071 H02 A1MBK 41 A1MBK H03 H11 H 0 1 N N N N N N -19.987 -43.207 9.878 4.700 1.811 -2.123 H03 A1MBK 42 A1MBK H04 H12 H 0 1 N N N N N N -20.621 -42.344 11.935 3.452 -0.108 -1.822 H04 A1MBK 43 A1MBK H07 H13 H 0 1 N N N N N N -18.646 -45.032 9.202 5.685 3.836 -0.799 H07 A1MBK 44 A1MBK H08 H14 H 0 1 N N N N N N -20.173 -45.380 8.322 3.908 3.729 -0.820 H08 A1MBK 45 A1MBK H11 H15 H 0 1 N N N N N N -19.369 -40.119 15.445 2.697 -4.879 1.150 H11 A1MBK 46 A1MBK H16 H16 H 0 1 N N N N N N -11.410 -44.166 11.486 -3.813 2.858 1.826 H16 A1MBK 47 A1MBK H17 H17 H 0 1 N N N N N N -10.364 -41.509 8.256 -7.019 1.312 -0.496 H17 A1MBK 48 A1MBK H09 H18 H 0 1 N N N N N N -18.779 -47.297 8.494 4.688 5.244 0.878 H09 A1MBK 49 A1MBK H1 H19 H 0 1 N N N N N N -18.777 -47.215 10.125 3.976 3.927 1.601 H1 A1MBK 50 A1MBK H13 H21 H 0 1 N N N N N N -15.325 -39.179 13.830 -1.968 -2.473 0.598 H13 A1MBK 51 A1MBK H14 H22 H 0 1 N N N N N N -14.729 -40.660 13.488 -1.794 -4.119 0.886 H14 A1MBK 52 A1MBK H05 H23 H 0 1 N N N N N N -22.293 -42.734 9.770 6.636 0.421 -2.291 H05 A1MBK 53 A1MBK H06 H24 H 0 1 N N N N N N -22.783 -43.273 11.929 5.484 -1.352 -2.014 H06 A1MBK 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MBK N01 C05 SING N N 1 A1MBK N02 C06 DOUB Y N 2 A1MBK N02 C09 SING Y N 3 A1MBK N03 C07 DOUB Y N 4 A1MBK N03 C06 SING Y N 5 A1MBK N04 C10 SING Y N 6 A1MBK N04 C02 SING N N 7 A1MBK N04 C07 SING Y N 8 A1MBK N05 C09 SING N N 9 A1MBK C01 C03 SING N N 10 A1MBK C01 C05 SING N N 11 A1MBK C01 O01 SING N N 12 A1MBK C02 C04 SING N N 13 A1MBK C02 O01 SING N N 14 A1MBK C03 C04 SING N N 15 A1MBK C03 O02 SING N N 16 A1MBK C04 O03 SING N N 17 A1MBK C07 C08 SING Y N 18 A1MBK C08 C09 DOUB Y N 19 A1MBK C08 C11 SING Y N 20 A1MBK C10 C11 DOUB Y N 21 A1MBK C11 C12 SING N N 22 A1MBK C12 C13 DOUB Y N 23 A1MBK C12 S01 SING Y N 24 A1MBK C13 C14 SING Y N 25 A1MBK C14 C15 DOUB Y N 26 A1MBK C14 C16 SING Y N 27 A1MBK C15 C19 SING Y N 28 A1MBK C15 S01 SING Y N 29 A1MBK C16 C17 DOUB Y N 30 A1MBK C17 C18 SING Y N 31 A1MBK C17 C21 SING N N 32 A1MBK C18 C19 DOUB Y N 33 A1MBK C19 O04 SING N N 34 A1MBK C20 O04 SING N N 35 A1MBK C10 H12 SING N N 36 A1MBK C13 H15 SING N N 37 A1MBK C20 H18 SING N N 38 A1MBK C20 H19 SING N N 39 A1MBK C20 H20 SING N N 40 A1MBK C21 H21 SING N N 41 A1MBK C21 H22 SING N N 42 A1MBK C21 H23 SING N N 43 A1MBK C01 H01 SING N N 44 A1MBK C02 H02 SING N N 45 A1MBK C03 H03 SING N N 46 A1MBK C04 H04 SING N N 47 A1MBK C05 H07 SING N N 48 A1MBK C05 H08 SING N N 49 A1MBK C06 H11 SING N N 50 A1MBK C16 H16 SING N N 51 A1MBK C18 H17 SING N N 52 A1MBK N01 H09 SING N N 53 A1MBK N01 H1 SING N N 54 A1MBK N05 H13 SING N N 55 A1MBK N05 H14 SING N N 56 A1MBK O02 H05 SING N N 57 A1MBK O03 H06 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MBK InChI InChI 1.06 "InChI=1S/C21H23N5O4S/c1-9-3-10-5-14(31-18(10)12(4-9)29-2)11-7-26(20-15(11)19(23)24-8-25-20)21-17(28)16(27)13(6-22)30-21/h3-5,7-8,13,16-17,21,27-28H,6,22H2,1-2H3,(H2,23,24,25)/t13-,16-,17-,21-/m1/s1" A1MBK InChIKey InChI 1.06 GLTOJXKSFNMDDX-TXRZWFJJSA-N A1MBK SMILES_CANONICAL CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([C@@H]4O[C@H](CN)[C@@H](O)[C@H]4O)c5ncnc(N)c35" A1MBK SMILES CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([CH]4O[CH](CN)[CH](O)[CH]4O)c5ncnc(N)c35" A1MBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CN)O)O" A1MBK SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)C5C(C(C(O5)CN)O)O" # _pdbx_chem_comp_identifier.comp_id A1MBK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{R})-2-(aminomethyl)-5-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MBK "Create component" 2025-08-26 PDBJ A1MBK "Initial release" 2026-09-02 RCSB #