data_A1MCB # _chem_comp.id A1MCB _chem_comp.name "15d-PGJ2(linked form)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(~{Z})-7-[(1~{R},2~{E})-2-[(~{E})-oct-2-enylidene]-3-oxidanylidene-cyclopentyl]hept-5-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-09-26 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MCB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WUQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MCB C1 C1 C 0 1 N N N N N N 11.695 5.600 -47.797 5.097 4.612 -1.224 C1 A1MCB 1 A1MCB C2 C2 C 0 1 N N N N N N 10.331 5.666 -47.124 3.658 4.672 -0.708 C2 A1MCB 2 A1MCB C3 C3 C 0 1 N N N N N N 10.206 5.039 -45.739 3.196 3.266 -0.322 C3 A1MCB 3 A1MCB C4 C4 C 0 1 N N N N N N 10.979 5.662 -44.582 1.757 3.326 0.194 C4 A1MCB 4 A1MCB C5 C5 C 0 1 N N N N N N 10.820 4.928 -43.239 1.294 1.919 0.581 C5 A1MCB 5 A1MCB C6 C6 C 0 1 N N N N N N 11.441 3.570 -43.205 -0.123 1.978 1.089 C6 A1MCB 6 A1MCB C7 C7 C 0 1 N N N N N N 10.786 2.398 -43.172 -1.082 1.279 0.476 C7 A1MCB 7 A1MCB C8 C8 C 0 1 N N N N N N 11.417 1.141 -43.256 -2.474 1.421 0.898 C8 A1MCB 8 A1MCB C10 C9 C 0 1 N N N N N N 10.818 -0.141 -43.322 -3.443 0.683 0.301 C10 A1MCB 9 A1MCB C11 C10 C 0 1 N N N N N N 11.572 -1.388 -43.592 -4.828 0.873 0.465 C11 A1MCB 10 A1MCB O12 O1 O 0 1 N N N N N N 12.757 -1.497 -43.813 -5.341 1.725 1.163 O12 A1MCB 11 A1MCB C13 C11 C 0 1 N N N N N N 10.584 -2.525 -43.583 -5.578 -0.146 -0.363 C13 A1MCB 12 A1MCB C14 C12 C 0 1 N N N N N N 9.396 -1.954 -42.825 -4.542 -1.240 -0.695 C14 A1MCB 13 A1MCB C15 C13 C 0 1 N N R N N N 9.343 -0.467 -43.187 -3.204 -0.468 -0.650 C15 A1MCB 14 A1MCB C16 C14 C 0 1 N N N N N N 8.608 -0.142 -44.492 -2.089 -1.372 -0.118 C16 A1MCB 15 A1MCB C17 C15 C 0 1 N N N N N N 7.161 -0.497 -44.563 -1.787 -2.446 -1.131 C17 A1MCB 16 A1MCB C18 C16 C 0 1 N N N N N N 6.596 -1.302 -45.445 -0.557 -2.634 -1.540 C18 A1MCB 17 A1MCB C19 C17 C 0 1 N N N N N N 7.323 -2.061 -46.526 0.578 -1.895 -0.878 C19 A1MCB 18 A1MCB C20 C18 C 0 1 N N N N N N 6.983 -3.538 -46.632 1.647 -2.895 -0.433 C20 A1MCB 19 A1MCB C21 C19 C 0 1 N N N N N N 7.141 -4.316 -45.319 2.799 -2.145 0.239 C21 A1MCB 20 A1MCB C22 C20 C 0 1 N N N N N N 5.933 -4.461 -44.394 3.852 -3.131 0.676 C22 A1MCB 21 A1MCB O23 O2 O 0 1 N N N N N N 5.904 -3.801 -43.323 4.962 -2.696 1.293 O23 A1MCB 22 A1MCB O24 O3 O 0 1 N N N N N N 5.019 -5.258 -44.724 3.697 -4.311 0.472 O24 A1MCB 23 A1MCB H1 H1 H 0 1 N N N N N N 11.642 6.086 -48.782 5.747 4.218 -0.442 H1 A1MCB 24 A1MCB H2 H2 H 0 1 N N N N N N 12.438 6.118 -47.172 5.143 3.962 -2.097 H2 A1MCB 25 A1MCB H3 H3 H 0 1 N N N N N N 11.991 4.548 -47.923 5.426 5.614 -1.499 H3 A1MCB 26 A1MCB H4 H4 H 0 1 N N N N N N 10.058 6.728 -47.032 3.612 5.322 0.166 H4 A1MCB 27 A1MCB H5 H5 H 0 1 N N N N N N 9.612 5.158 -47.783 3.008 5.066 -1.489 H5 A1MCB 28 A1MCB H6 H6 H 0 1 N N N N N N 9.140 5.064 -45.467 3.242 2.615 -1.195 H6 A1MCB 29 A1MCB H7 H7 H 0 1 N N N N N N 10.538 3.994 -45.825 3.845 2.871 0.460 H7 A1MCB 30 A1MCB H8 H8 H 0 1 N N N N N N 12.047 5.668 -44.846 1.710 3.976 1.068 H8 A1MCB 31 A1MCB H9 H9 H 0 1 N N N N N N 10.628 6.696 -44.452 1.107 3.720 -0.587 H9 A1MCB 32 A1MCB H10 H10 H 0 1 N N N N N N 11.287 5.541 -42.454 1.340 1.269 -0.293 H10 A1MCB 33 A1MCB H11 H11 H 0 1 N N N N N N 9.745 4.821 -43.030 1.944 1.525 1.362 H11 A1MCB 34 A1MCB H12 H12 H 0 1 N N N N N N 12.520 3.526 -43.207 -0.364 2.586 1.948 H12 A1MCB 35 A1MCB H13 H13 H 0 1 N N N N N N 9.711 2.420 -43.075 -0.829 0.608 -0.331 H13 A1MCB 36 A1MCB H14 H14 H 0 1 N N N N N N 12.497 1.157 -43.272 -2.731 2.114 1.686 H14 A1MCB 37 A1MCB H15 H15 H 0 1 N N N N N N 10.299 -2.807 -44.607 -6.402 -0.567 0.212 H15 A1MCB 38 A1MCB H16 H16 H 0 1 N N N N N N 10.998 -3.402 -43.063 -5.950 0.312 -1.280 H16 A1MCB 39 A1MCB H17 H17 H 0 1 N N N N N N 8.468 -2.456 -43.134 -4.562 -2.031 0.055 H17 A1MCB 40 A1MCB H18 H18 H 0 1 N N N N N N 9.537 -2.079 -41.741 -4.718 -1.650 -1.690 H18 A1MCB 41 A1MCB H19 H19 H 0 1 N N N N N N 8.903 0.105 -42.357 -2.947 -0.093 -1.640 H19 A1MCB 42 A1MCB H20 H20 H 0 1 N N N N N N 9.121 -0.678 -45.304 -1.193 -0.778 0.059 H20 A1MCB 43 A1MCB H21 H21 H 0 1 N N N N N N 8.692 0.942 -44.658 -2.410 -1.833 0.816 H21 A1MCB 44 A1MCB H22 H22 H 0 1 N N N N N N 6.513 -0.053 -43.822 -2.585 -3.061 -1.520 H22 A1MCB 45 A1MCB H23 H23 H 0 1 N N N N N N 5.525 -1.427 -45.387 -0.356 -3.318 -2.351 H23 A1MCB 46 A1MCB H24 H24 H 0 1 N N N N N N 8.402 -1.975 -46.333 1.013 -1.188 -1.584 H24 A1MCB 47 A1MCB H25 H25 H 0 1 N N N N N N 7.084 -1.589 -47.490 0.202 -1.355 -0.009 H25 A1MCB 48 A1MCB H26 H26 H 0 1 N N N N N N 5.938 -3.628 -46.963 1.212 -3.602 0.273 H26 A1MCB 49 A1MCB H27 H27 H 0 1 N N N N N N 7.646 -3.991 -47.384 2.023 -3.435 -1.303 H27 A1MCB 50 A1MCB H28 H28 H 0 1 N N N N N N 7.468 -5.332 -45.584 3.234 -1.439 -0.468 H28 A1MCB 51 A1MCB H29 H29 H 0 1 N N N N N N 7.932 -3.815 -44.741 2.423 -1.605 1.108 H29 A1MCB 52 A1MCB H30 H30 H 0 1 N N N N N N 5.110 -4.008 -42.844 5.609 -3.365 1.555 H30 A1MCB 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MCB C1 C2 SING N N 1 A1MCB C2 C3 SING N N 2 A1MCB C20 C19 SING N N 3 A1MCB C20 C21 SING N N 4 A1MCB C19 C18 SING N N 5 A1MCB C3 C4 SING N N 6 A1MCB C18 C17 DOUB N Z 7 A1MCB C21 C22 SING N N 8 A1MCB O24 C22 DOUB N N 9 A1MCB C4 C5 SING N N 10 A1MCB C17 C16 SING N N 11 A1MCB C16 C15 SING N N 12 A1MCB C22 O23 SING N N 13 A1MCB O12 C11 DOUB N N 14 A1MCB C11 C13 SING N N 15 A1MCB C11 C10 SING N N 16 A1MCB C13 C14 SING N N 17 A1MCB C10 C8 DOUB N E 18 A1MCB C10 C15 SING N N 19 A1MCB C8 C7 SING N N 20 A1MCB C5 C6 SING N N 21 A1MCB C6 C7 DOUB N E 22 A1MCB C15 C14 SING N N 23 A1MCB C1 H1 SING N N 24 A1MCB C1 H2 SING N N 25 A1MCB C1 H3 SING N N 26 A1MCB C2 H4 SING N N 27 A1MCB C2 H5 SING N N 28 A1MCB C3 H6 SING N N 29 A1MCB C3 H7 SING N N 30 A1MCB C4 H8 SING N N 31 A1MCB C4 H9 SING N N 32 A1MCB C5 H10 SING N N 33 A1MCB C5 H11 SING N N 34 A1MCB C6 H12 SING N N 35 A1MCB C7 H13 SING N N 36 A1MCB C8 H14 SING N N 37 A1MCB C13 H15 SING N N 38 A1MCB C13 H16 SING N N 39 A1MCB C14 H17 SING N N 40 A1MCB C14 H18 SING N N 41 A1MCB C15 H19 SING N N 42 A1MCB C16 H20 SING N N 43 A1MCB C16 H21 SING N N 44 A1MCB C17 H22 SING N N 45 A1MCB C18 H23 SING N N 46 A1MCB C19 H24 SING N N 47 A1MCB C19 H25 SING N N 48 A1MCB C20 H26 SING N N 49 A1MCB C20 H27 SING N N 50 A1MCB C21 H28 SING N N 51 A1MCB C21 H29 SING N N 52 A1MCB O23 H30 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MCB InChI InChI 1.06 "InChI=1S/C20H30O3/c1-2-3-4-5-6-10-13-18-17(15-16-19(18)21)12-9-7-8-11-14-20(22)23/h6-7,9-10,13,17H,2-5,8,11-12,14-16H2,1H3,(H,22,23)/b9-7-,10-6+,18-13+/t17-/m0/s1" A1MCB InChIKey InChI 1.06 AFBJLDUEEOOVHL-GODQJPCRSA-N A1MCB SMILES_CANONICAL CACTVS 3.385 "CCCCC\C=C\C=C\1[C@H](CCC\1=O)C\C=C/CCCC(O)=O" A1MCB SMILES CACTVS 3.385 "CCCCCC=CC=C1[CH](CCC1=O)CC=CCCCC(O)=O" A1MCB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC/C=C/C=C/1\[C@H](CCC1=O)C/C=C\CCCC(=O)O" A1MCB SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC=CC=C1C(CCC1=O)CC=CCCCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1MCB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z})-7-[(1~{R},2~{E})-2-[(~{E})-oct-2-enylidene]-3-oxidanylidene-cyclopentyl]hept-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MCB "Create component" 2025-09-26 PDBJ A1MCB "Initial release" 2026-08-26 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1MCB _pdbx_chem_comp_synonyms.name "(~{Z})-7-[(1~{R},2~{E})-2-[(~{E})-oct-2-enylidene]-3-oxidanylidene-cyclopentyl]hept-5-enoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1MCB _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #