data_A1MCE # _chem_comp.id A1MCE _chem_comp.name "4-oxidanylidene-4-[[6-oxidanylidene-5-[(3-phenylphenyl)methylcarbamoyl]-1~{H}-pyrimidin-2-yl]amino]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-10-01 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.418 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MCE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9WY5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MCE C1 C1 C 0 1 N N N N N N 22.890 13.235 5.859 2.052 -1.495 1.058 C1 A1MCE 1 A1MCE C2 C2 C 0 1 N N N N N N 21.649 13.886 5.951 0.838 -1.274 0.407 C2 A1MCE 2 A1MCE C3 C3 C 0 1 N N N N N N 21.420 14.803 4.901 0.819 -0.385 -0.702 C3 A1MCE 3 A1MCE C4 C4 C 0 1 N N N N N N 23.474 14.391 3.959 3.121 -0.055 -0.396 C4 A1MCE 4 A1MCE C5 C5 C 0 1 N N N N N N 25.643 14.179 2.751 5.431 0.322 -0.120 C5 A1MCE 5 A1MCE C6 C6 C 0 1 N N N N N N 20.630 13.558 7.012 -0.389 -1.945 0.855 C6 A1MCE 6 A1MCE C7 C7 C 0 1 N N N N N N 18.378 14.030 7.909 -2.810 -2.217 0.813 C7 A1MCE 7 A1MCE N1 N1 N 0 1 N N N N N N 22.305 15.057 3.927 1.974 0.206 -1.075 N1 A1MCE 8 A1MCE N2 N2 N 0 1 N N N N N N 23.787 13.457 4.875 3.145 -0.875 0.637 N2 A1MCE 9 A1MCE N3 N3 N 0 1 N N N N N N 24.385 14.662 2.929 4.284 0.560 -0.788 N3 A1MCE 10 A1MCE C9 C8 C 0 1 Y N N N N N 17.243 12.497 6.237 -4.402 -2.401 -1.111 C9 A1MCE 11 A1MCE C8 C9 C 0 1 Y N N N N N 17.376 12.956 7.547 -3.982 -1.710 0.012 C8 A1MCE 12 A1MCE O1 O1 O 0 1 N N N N N N 26.284 13.572 3.636 5.434 -0.435 0.827 O1 A1MCE 13 A1MCE O2 O2 O 0 1 N N N N N N 20.814 12.654 7.837 -0.338 -2.782 1.737 O2 A1MCE 14 A1MCE C10 C10 C 0 1 Y N N N N N 16.306 11.516 5.931 -5.473 -1.938 -1.853 C10 A1MCE 15 A1MCE C12 C11 C 0 1 Y N N N N N 15.616 11.398 8.253 -5.718 -0.090 -0.340 C12 A1MCE 16 A1MCE C17 C12 C 0 1 Y N N N N N 14.758 10.817 9.333 -6.424 1.148 0.073 C17 A1MCE 17 A1MCE C16 C13 C 0 1 N N N N N N 27.394 13.566 -0.698 9.127 1.234 -0.063 C16 A1MCE 18 A1MCE C15 C14 C 0 1 N N N N N N 26.801 13.271 0.678 7.850 0.559 0.367 C15 A1MCE 19 A1MCE C14 C15 C 0 1 N N N N N N 26.229 14.484 1.389 6.707 0.997 -0.550 C14 A1MCE 20 A1MCE C13 C16 C 0 1 Y N N N N N 16.556 12.396 8.537 -4.635 -0.558 0.401 C13 A1MCE 21 A1MCE C18 C17 C 0 1 Y N N N N N 14.300 11.602 10.395 -7.507 1.616 -0.668 C18 A1MCE 22 A1MCE C19 C18 C 0 1 Y N N N N N 13.509 11.064 11.404 -8.160 2.768 -0.279 C19 A1MCE 23 A1MCE N4 N4 N 0 1 N N N N N N 19.478 14.241 6.970 -1.572 -1.632 0.291 N4 A1MCE 24 A1MCE O3 O3 O 0 1 N N N N N N 26.784 14.359 -1.462 9.123 1.988 -1.007 O3 A1MCE 25 A1MCE C11 C19 C 0 1 Y N N N N N 15.497 10.982 6.925 -6.130 -0.784 -1.476 C11 A1MCE 26 A1MCE O4 O4 O 0 1 N N N N N N 28.492 13.048 -1.019 10.269 0.997 0.602 O4 A1MCE 27 A1MCE C20 C20 C 0 1 Y N N N N N 13.154 9.732 11.367 -7.741 3.457 0.844 C20 A1MCE 28 A1MCE C21 C21 C 0 1 Y N N N N N 13.593 8.940 10.324 -6.666 2.998 1.584 C21 A1MCE 29 A1MCE C22 C22 C 0 1 Y N N N N N 14.390 9.472 9.319 -6.009 1.844 1.207 C22 A1MCE 30 A1MCE O5 O5 O 0 1 N N N N N N 20.267 15.506 4.838 -0.217 -0.160 -1.303 O5 A1MCE 31 A1MCE H1 H1 H 0 1 N N N N N N 23.142 12.513 6.622 2.099 -2.165 1.903 H1 A1MCE 32 A1MCE H2 H2 H 0 1 N N N N N N 18.816 13.763 8.882 -2.934 -1.933 1.858 H2 A1MCE 33 A1MCE H3 H3 H 0 1 N N N N N N 17.831 14.980 8.001 -2.760 -3.303 0.735 H3 A1MCE 34 A1MCE H4 H4 H 0 1 N N N N N N 22.104 15.717 3.203 1.987 0.813 -1.831 H4 A1MCE 35 A1MCE H5 H5 H 0 1 N N N N N N 24.065 15.299 2.228 4.281 1.166 -1.545 H5 A1MCE 36 A1MCE H6 H6 H 0 1 N N N N N N 17.870 12.905 5.458 -3.888 -3.302 -1.411 H6 A1MCE 37 A1MCE H7 H7 H 0 1 N N N N N N 16.207 11.167 4.914 -5.796 -2.481 -2.729 H7 A1MCE 38 A1MCE H8 H8 H 0 1 N N N N N N 25.995 12.533 0.554 7.972 -0.523 0.305 H8 A1MCE 39 A1MCE H9 H9 H 0 1 N N N N N N 27.594 12.844 1.310 7.620 0.840 1.395 H9 A1MCE 40 A1MCE H10 H10 H 0 1 N N N N N N 27.035 15.222 1.516 6.938 0.716 -1.578 H10 A1MCE 41 A1MCE H11 H11 H 0 1 N N N N N N 25.435 14.912 0.759 6.586 2.079 -0.488 H11 A1MCE 42 A1MCE H12 H12 H 0 1 N N N N N N 16.653 12.747 9.554 -4.307 -0.020 1.278 H12 A1MCE 43 A1MCE H13 H13 H 0 1 N N N N N N 14.566 12.648 10.433 -7.835 1.078 -1.545 H13 A1MCE 44 A1MCE H14 H14 H 0 1 N N N N N N 13.172 11.690 12.217 -9.000 3.131 -0.853 H14 A1MCE 45 A1MCE H15 H15 H 0 1 N N N N N N 19.365 14.933 6.257 -1.605 -1.020 -0.461 H15 A1MCE 46 A1MCE H16 H16 H 0 1 N N N N N N 14.763 10.232 6.667 -6.966 -0.423 -2.057 H16 A1MCE 47 A1MCE H17 H17 H 0 1 N N N N N N 28.745 13.352 -1.883 11.062 1.453 0.289 H17 A1MCE 48 A1MCE H18 H18 H 0 1 N N N N N N 12.537 9.311 12.148 -8.255 4.359 1.145 H18 A1MCE 49 A1MCE H19 H19 H 0 1 N N N N N N 13.314 7.897 10.290 -6.343 3.540 2.460 H19 A1MCE 50 A1MCE H20 H20 H 0 1 N N N N N N 14.730 8.835 8.515 -5.173 1.484 1.787 H20 A1MCE 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MCE O3 C16 DOUB N N 1 A1MCE O4 C16 SING N N 2 A1MCE C16 C15 SING N N 3 A1MCE C15 C14 SING N N 4 A1MCE C14 C5 SING N N 5 A1MCE C5 N3 SING N N 6 A1MCE C5 O1 DOUB N N 7 A1MCE N3 C4 SING N N 8 A1MCE N1 C4 SING N N 9 A1MCE N1 C3 SING N N 10 A1MCE C4 N2 DOUB N N 11 A1MCE O5 C3 DOUB N N 12 A1MCE N2 C1 SING N N 13 A1MCE C3 C2 SING N N 14 A1MCE C1 C2 DOUB N N 15 A1MCE C10 C9 DOUB Y N 16 A1MCE C10 C11 SING Y N 17 A1MCE C2 C6 SING N N 18 A1MCE C9 C8 SING Y N 19 A1MCE C11 C12 DOUB Y N 20 A1MCE N4 C6 SING N N 21 A1MCE N4 C7 SING N N 22 A1MCE C6 O2 DOUB N N 23 A1MCE C8 C7 SING N N 24 A1MCE C8 C13 DOUB Y N 25 A1MCE C12 C13 SING Y N 26 A1MCE C12 C17 SING N N 27 A1MCE C22 C17 DOUB Y N 28 A1MCE C22 C21 SING Y N 29 A1MCE C17 C18 SING Y N 30 A1MCE C21 C20 DOUB Y N 31 A1MCE C18 C19 DOUB Y N 32 A1MCE C20 C19 SING Y N 33 A1MCE C1 H1 SING N N 34 A1MCE C7 H2 SING N N 35 A1MCE C7 H3 SING N N 36 A1MCE N1 H4 SING N N 37 A1MCE N3 H5 SING N N 38 A1MCE C9 H6 SING N N 39 A1MCE C10 H7 SING N N 40 A1MCE C15 H8 SING N N 41 A1MCE C15 H9 SING N N 42 A1MCE C14 H10 SING N N 43 A1MCE C14 H11 SING N N 44 A1MCE C13 H12 SING N N 45 A1MCE C18 H13 SING N N 46 A1MCE C19 H14 SING N N 47 A1MCE N4 H15 SING N N 48 A1MCE C11 H16 SING N N 49 A1MCE O4 H17 SING N N 50 A1MCE C20 H18 SING N N 51 A1MCE C21 H19 SING N N 52 A1MCE C22 H20 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MCE InChI InChI 1.06 "InChI=1S/C22H20N4O5/c27-18(9-10-19(28)29)25-22-24-13-17(21(31)26-22)20(30)23-12-14-5-4-8-16(11-14)15-6-2-1-3-7-15/h1-8,11,13H,9-10,12H2,(H,23,30)(H,28,29)(H2,24,25,26,27,31)" A1MCE InChIKey InChI 1.06 VCOPQSOIAYXCGU-UHFFFAOYSA-N A1MCE SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCC(=O)NC1=NC=C(C(=O)NCc2cccc(c2)c3ccccc3)C(=O)N1" A1MCE SMILES CACTVS 3.385 "OC(=O)CCC(=O)NC1=NC=C(C(=O)NCc2cccc(c2)c3ccccc3)C(=O)N1" A1MCE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cccc(c2)CNC(=O)C3=CN=C(NC3=O)NC(=O)CCC(=O)O" A1MCE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cccc(c2)CNC(=O)C3=CN=C(NC3=O)NC(=O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id A1MCE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-oxidanylidene-4-[[6-oxidanylidene-5-[(3-phenylphenyl)methylcarbamoyl]-1~{H}-pyrimidin-2-yl]amino]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MCE "Create component" 2025-10-01 PDBJ A1MCE "Initial release" 2026-08-12 RCSB #