data_A1MCM # _chem_comp.id A1MCM _chem_comp.name "(4~{S})-4-[3-chloranyl-4-(2,2-dimethylpropoxy)phenyl]-~{N},~{N},6-trimethyl-2-oxidanylidene-3,4-dihydro-1~{H}-pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 Cl N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-11-17 _chem_comp.pdbx_modified_date 2026-04-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 379.881 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MCM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9XMJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MCM C1 C1 C 0 1 N N N N N N -18.585 32.510 -75.494 -2.810 -0.334 0.054 C1 A1MCM 1 A1MCM C2 C2 C 0 1 N N S N N N -18.883 33.714 -76.274 -2.071 0.276 -1.120 C2 A1MCM 2 A1MCM C3 C3 C 0 1 N N N N N N -19.284 31.361 -75.728 -3.741 0.423 0.672 C3 A1MCM 3 A1MCM C4 C4 C 0 1 N N N N N N -20.614 32.379 -77.475 -3.387 2.282 -0.779 C4 A1MCM 4 A1MCM C7 C5 C 0 1 N N N N N N -17.402 32.635 -74.519 -2.536 -1.655 0.486 C7 A1MCM 5 A1MCM C8 C6 C 0 1 Y N N N N N -19.513 34.713 -75.267 -0.598 0.252 -0.806 C8 A1MCM 6 A1MCM C9 C7 C 0 1 Y N N N N N -20.567 34.390 -74.372 -0.074 1.143 0.113 C9 A1MCM 7 A1MCM C10 C8 C 0 1 Y N N N N N -21.066 35.293 -73.419 1.277 1.122 0.404 C10 A1MCM 8 A1MCM C11 C9 C 0 1 Y N N N N N -20.573 36.613 -73.458 2.108 0.206 -0.228 C11 A1MCM 9 A1MCM C14 C10 C 0 1 Y N N N N N -19.091 36.060 -75.262 0.227 -0.664 -1.432 C14 A1MCM 10 A1MCM CL19 CL1 CL 0 0 N N N N N N -22.324 34.893 -72.256 1.935 2.241 1.557 CL19 A1MCM 11 A1MCM O13 O1 O 0 1 N N N N N N -21.097 37.479 -72.566 3.437 0.184 0.056 O13 A1MCM 12 A1MCM C18 C11 C 0 1 N N N N N N -20.457 38.770 -72.508 4.231 -0.785 -0.632 C18 A1MCM 13 A1MCM C17 C12 C 0 1 N N N N N N -20.995 39.267 -71.154 5.689 -0.660 -0.185 C17 A1MCM 14 A1MCM C24 C13 C 0 1 N N N N N N -20.597 38.161 -70.132 5.783 -0.900 1.323 C24 A1MCM 15 A1MCM C23 C14 C 0 1 N N N N N N -20.438 40.619 -70.644 6.539 -1.697 -0.922 C23 A1MCM 16 A1MCM C22 C15 C 0 1 N N N N N N -22.511 39.378 -71.255 6.203 0.744 -0.510 C22 A1MCM 17 A1MCM C16 C16 C 0 1 Y N N N N N -19.657 37.037 -74.424 1.579 -0.685 -1.149 C16 A1MCM 18 A1MCM N6 N1 N 0 1 N N N N N N -19.899 33.514 -77.314 -2.434 1.653 -1.494 N6 A1MCM 19 A1MCM O12 O2 O 0 1 N N N N N N -21.482 32.265 -78.300 -3.694 3.420 -1.080 O12 A1MCM 20 A1MCM N5 N2 N 0 1 N N N N N N -20.277 31.340 -76.679 -4.009 1.695 0.251 N5 A1MCM 21 A1MCM C21 C17 C 0 1 N N N N N N -19.167 29.995 -75.124 -4.499 -0.146 1.844 C21 A1MCM 22 A1MCM O15 O3 O 0 1 N N N N N N -16.277 32.868 -74.982 -1.601 -1.869 1.236 O15 A1MCM 23 A1MCM N20 N3 N 0 1 N N N N N N -17.424 32.348 -73.187 -3.309 -2.675 0.066 N20 A1MCM 24 A1MCM C26 C18 C 0 1 N N N N N N -16.136 32.228 -72.529 -2.964 -4.053 0.426 C26 A1MCM 25 A1MCM C25 C19 C 0 1 N N N N N N -18.676 32.151 -72.420 -4.496 -2.407 -0.751 C25 A1MCM 26 A1MCM H27 H1 H 0 1 N N N N N N -17.965 34.145 -76.699 -2.237 -0.362 -1.988 H27 A1MCM 27 A1MCM H30 H2 H 0 1 N N N N N N -21.005 33.404 -74.427 -0.721 1.855 0.604 H30 A1MCM 28 A1MCM H31 H3 H 0 1 N N N N N N -18.297 36.354 -75.933 -0.186 -1.362 -2.145 H31 A1MCM 29 A1MCM H33 H4 H 0 1 N N N N N N -20.772 39.421 -73.337 3.865 -1.785 -0.400 H33 A1MCM 30 A1MCM H34 H5 H 0 1 N N N N N N -19.360 38.683 -72.506 4.164 -0.613 -1.706 H34 A1MCM 31 A1MCM H44 H6 H 0 1 N N N N N N -19.501 38.094 -70.072 5.417 -1.901 1.554 H44 A1MCM 32 A1MCM H45 H7 H 0 1 N N N N N N -21.004 38.413 -69.142 6.822 -0.811 1.641 H45 A1MCM 33 A1MCM H46 H8 H 0 1 N N N N N N -21.005 37.194 -70.461 5.177 -0.161 1.847 H46 A1MCM 34 A1MCM H41 H9 H 0 1 N N N N N N -19.343 40.558 -70.564 6.472 -1.525 -1.996 H41 A1MCM 35 A1MCM H42 H10 H 0 1 N N N N N N -20.711 41.417 -71.350 7.578 -1.607 -0.603 H42 A1MCM 36 A1MCM H43 H11 H 0 1 N N N N N N -20.866 40.842 -69.655 6.173 -2.697 -0.690 H43 A1MCM 37 A1MCM H38 H12 H 0 1 N N N N N N -22.918 39.732 -70.296 5.597 1.484 0.014 H38 A1MCM 38 A1MCM H39 H13 H 0 1 N N N N N N -22.774 40.090 -72.051 7.241 0.834 -0.192 H39 A1MCM 39 A1MCM H40 H14 H 0 1 N N N N N N -22.936 38.391 -71.491 6.136 0.916 -1.585 H40 A1MCM 40 A1MCM H32 H15 H 0 1 N N N N N N -19.393 38.079 -74.524 2.223 -1.401 -1.638 H32 A1MCM 41 A1MCM H29 H16 H 0 1 N N N N N N -20.074 34.269 -77.946 -1.996 2.097 -2.237 H29 A1MCM 42 A1MCM H28 H17 H 0 1 N N N N N N -20.790 30.489 -76.790 -4.687 2.201 0.726 H28 A1MCM 43 A1MCM H35 H18 H 0 1 N N N N N N -19.915 29.328 -75.578 -4.008 0.150 2.771 H35 A1MCM 44 A1MCM H36 H19 H 0 1 N N N N N N -18.159 29.597 -75.311 -5.520 0.236 1.836 H36 A1MCM 45 A1MCM H37 H20 H 0 1 N N N N N N -19.342 30.057 -74.040 -4.517 -1.233 1.773 H37 A1MCM 46 A1MCM H50 H21 H 0 1 N N N N N N -15.333 32.407 -73.259 -3.448 -4.314 1.368 H50 A1MCM 47 A1MCM H51 H22 H 0 1 N N N N N N -16.068 32.969 -71.719 -3.306 -4.730 -0.357 H51 A1MCM 48 A1MCM H52 H23 H 0 1 N N N N N N -16.031 31.216 -72.110 -1.883 -4.140 0.536 H52 A1MCM 49 A1MCM H47 H24 H 0 1 N N N N N N -19.540 32.282 -73.088 -4.539 -1.345 -0.991 H47 A1MCM 50 A1MCM H48 H25 H 0 1 N N N N N N -18.691 31.136 -71.997 -4.440 -2.986 -1.673 H48 A1MCM 51 A1MCM H49 H26 H 0 1 N N N N N N -18.727 32.889 -71.606 -5.390 -2.691 -0.197 H49 A1MCM 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MCM C26 N20 SING N N 1 A1MCM C25 N20 SING N N 2 A1MCM N20 C7 SING N N 3 A1MCM C21 C3 SING N N 4 A1MCM O15 C7 DOUB N N 5 A1MCM C7 C1 SING N N 6 A1MCM C1 C3 DOUB N N 7 A1MCM C3 N5 SING N N 8 A1MCM C1 C2 SING N N 9 A1MCM N5 C4 SING N N 10 A1MCM C2 C8 SING N N 11 A1MCM N6 C2 SING N N 12 A1MCM C4 N6 SING N N 13 A1MCM O12 C4 DOUB N N 14 A1MCM C8 C14 DOUB Y N 15 A1MCM C8 C9 SING Y N 16 A1MCM C14 C16 SING Y N 17 A1MCM C9 C10 DOUB Y N 18 A1MCM C22 C17 SING N N 19 A1MCM C16 C11 DOUB Y N 20 A1MCM C17 C18 SING N N 21 A1MCM C18 O13 SING N N 22 A1MCM C11 C10 SING Y N 23 A1MCM C10 CL19 SING N N 24 A1MCM O13 C11 SING N N 25 A1MCM C23 C17 SING N N 26 A1MCM C24 C17 SING N N 27 A1MCM C2 H27 SING N N 28 A1MCM C9 H30 SING N N 29 A1MCM C14 H31 SING N N 30 A1MCM C18 H33 SING N N 31 A1MCM C18 H34 SING N N 32 A1MCM C24 H44 SING N N 33 A1MCM C24 H45 SING N N 34 A1MCM C24 H46 SING N N 35 A1MCM C23 H41 SING N N 36 A1MCM C23 H42 SING N N 37 A1MCM C23 H43 SING N N 38 A1MCM C22 H38 SING N N 39 A1MCM C22 H39 SING N N 40 A1MCM C22 H40 SING N N 41 A1MCM C16 H32 SING N N 42 A1MCM N6 H29 SING N N 43 A1MCM N5 H28 SING N N 44 A1MCM C21 H35 SING N N 45 A1MCM C21 H36 SING N N 46 A1MCM C21 H37 SING N N 47 A1MCM C26 H50 SING N N 48 A1MCM C26 H51 SING N N 49 A1MCM C26 H52 SING N N 50 A1MCM C25 H47 SING N N 51 A1MCM C25 H48 SING N N 52 A1MCM C25 H49 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MCM InChI InChI 1.06 "InChI=1S/C19H26ClN3O3/c1-11-15(17(24)23(5)6)16(22-18(25)21-11)12-7-8-14(13(20)9-12)26-10-19(2,3)4/h7-9,16H,10H2,1-6H3,(H2,21,22,25)/t16-/m0/s1" A1MCM InChIKey InChI 1.06 YEPGKQXWRUMKBO-INIZCTEOSA-N A1MCM SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)C1=C(C)NC(=O)N[C@H]1c2ccc(OCC(C)(C)C)c(Cl)c2" A1MCM SMILES CACTVS 3.385 "CN(C)C(=O)C1=C(C)NC(=O)N[CH]1c2ccc(OCC(C)(C)C)c(Cl)c2" A1MCM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C([C@@H](NC(=O)N1)c2ccc(c(c2)Cl)OCC(C)(C)C)C(=O)N(C)C" A1MCM SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(NC(=O)N1)c2ccc(c(c2)Cl)OCC(C)(C)C)C(=O)N(C)C" # _pdbx_chem_comp_identifier.comp_id A1MCM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S})-4-[3-chloranyl-4-(2,2-dimethylpropoxy)phenyl]-~{N},~{N},6-trimethyl-2-oxidanylidene-3,4-dihydro-1~{H}-pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MCM "Create component" 2025-11-17 PDBJ A1MCM "Initial release" 2026-04-29 RCSB #