data_A1MDA # _chem_comp.id A1MDA _chem_comp.name "(3~{S})-~{N}-(2-oxidanylidene-3~{H}-1,3-benzothiazol-7-yl)-1-(2-pyridin-2-ylethyl)piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-23 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.479 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MDA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 21NJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MDA C10 C1 C 0 1 Y N N N N N -27.022 -5.311 -10.453 5.587 0.965 -0.306 C10 A1MDA 1 A1MDA C11 C2 C 0 1 Y N N N N N -27.846 -4.960 -9.396 5.483 2.330 0.009 C11 A1MDA 2 A1MDA C12 C3 C 0 1 Y N N N N N -27.389 -5.105 -8.048 4.313 2.852 0.507 C12 A1MDA 3 A1MDA C13 C4 C 0 1 Y N N N N N -26.050 -5.620 -7.835 3.206 2.048 0.713 C13 A1MDA 4 A1MDA C14 C5 C 0 1 N N S N N N -22.317 -7.877 -7.253 -0.262 -0.570 0.533 C14 A1MDA 5 A1MDA C15 C6 C 0 1 N N N N N N -21.519 -6.750 -6.784 -0.313 -1.160 1.945 C15 A1MDA 6 A1MDA O01 O1 O 0 1 N N N N N N -24.684 -7.650 -6.919 0.766 1.518 0.140 O01 A1MDA 7 A1MDA C02 C7 C 0 1 N N N N N N -23.741 -7.361 -7.594 0.928 0.347 0.414 C02 A1MDA 8 A1MDA N03 N1 N 0 1 N N N N N N -23.880 -6.446 -8.742 2.172 -0.133 0.610 N03 A1MDA 9 A1MDA C04 C8 C 0 1 Y N N N N N -25.218 -5.973 -8.965 3.283 0.696 0.409 C04 A1MDA 10 A1MDA C05 C9 C 0 1 Y N N N N N -25.640 -5.838 -10.281 4.464 0.168 -0.095 C05 A1MDA 11 A1MDA S06 S1 S 0 1 N N N N N N -24.913 -6.168 -11.742 4.924 -1.468 -0.585 S06 A1MDA 12 A1MDA C07 C10 C 0 1 N N N N N N -26.142 -5.737 -12.791 6.576 -1.022 -1.046 C07 A1MDA 13 A1MDA O08 O2 O 0 1 N N N N N N -26.257 -5.735 -13.963 7.439 -1.760 -1.482 O08 A1MDA 14 A1MDA N09 N2 N 0 1 N N N N N N -27.333 -5.242 -12.078 6.685 0.289 -0.807 N09 A1MDA 15 A1MDA C16 C11 C 0 1 N N N N N N -20.231 -7.179 -6.270 -1.557 -2.043 2.076 C16 A1MDA 16 A1MDA C17 C12 C 0 1 N N N N N N -20.340 -8.362 -5.288 -2.803 -1.209 1.767 C17 A1MDA 17 A1MDA N18 N3 N 0 1 N N N N N N -21.215 -9.422 -5.780 -2.706 -0.668 0.405 N18 A1MDA 18 A1MDA C19 C13 C 0 1 N N N N N N -21.289 -10.420 -5.082 -3.945 0.023 0.024 C19 A1MDA 19 A1MDA C20 C14 C 0 1 N N N N N N -22.250 -10.256 -3.849 -5.087 -0.992 -0.068 C20 A1MDA 20 A1MDA C21 C15 C 0 1 Y N N N N N -22.114 -11.446 -2.856 -6.358 -0.284 -0.460 C21 A1MDA 21 A1MDA N22 N4 N 0 1 Y N N N N N -20.909 -11.767 -2.385 -6.780 0.740 0.256 N22 A1MDA 22 A1MDA C23 C16 C 0 1 Y N N N N N -20.686 -12.781 -1.531 -7.887 1.390 -0.049 C23 A1MDA 23 A1MDA C24 C17 C 0 1 Y N N N N N -21.786 -13.542 -1.126 -8.648 1.016 -1.140 C24 A1MDA 24 A1MDA C25 C18 C 0 1 Y N N N N N -23.078 -13.240 -1.601 -8.236 -0.056 -1.916 C25 A1MDA 25 A1MDA C26 C19 C 0 1 Y N N N N N -23.250 -12.169 -2.493 -7.065 -0.712 -1.568 C26 A1MDA 26 A1MDA C27 C20 C 0 1 N N N N N N -22.496 -8.922 -6.145 -1.545 0.221 0.269 C27 A1MDA 27 A1MDA H1 H1 H 0 1 N N N N N N -28.836 -4.576 -9.590 6.334 2.978 -0.143 H1 A1MDA 28 A1MDA H2 H2 H 0 1 N N N N N N -28.022 -4.839 -7.214 4.257 3.905 0.743 H2 A1MDA 29 A1MDA H3 H3 H 0 1 N N N N N N -25.673 -5.740 -6.830 2.292 2.468 1.105 H3 A1MDA 30 A1MDA H4 H4 H 0 1 N N N N N N -21.865 -8.342 -8.142 -0.175 -1.376 -0.196 H4 A1MDA 31 A1MDA H5 H5 H 0 1 N N N N N N -21.355 -6.057 -7.622 0.580 -1.760 2.122 H5 A1MDA 32 A1MDA H6 H6 H 0 1 N N N N N N -22.068 -6.234 -5.983 -0.361 -0.352 2.675 H6 A1MDA 33 A1MDA H7 H7 H 0 1 N N N N N N -23.107 -6.177 -9.317 2.298 -1.053 0.891 H7 A1MDA 34 A1MDA H8 H8 H 0 1 N N N N N N -28.180 -4.921 -12.501 7.515 0.757 -0.988 H8 A1MDA 35 A1MDA H9 H9 H 0 1 N N N N N N -19.599 -7.483 -7.117 -1.490 -2.872 1.372 H9 A1MDA 36 A1MDA H10 H10 H 0 1 N N N N N N -19.762 -6.332 -5.748 -1.622 -2.431 3.092 H10 A1MDA 37 A1MDA H11 H11 H 0 1 N N N N N N -19.335 -8.781 -5.128 -3.689 -1.838 1.845 H11 A1MDA 38 A1MDA H12 H12 H 0 1 N N N N N N -20.739 -7.991 -4.333 -2.876 -0.388 2.480 H12 A1MDA 39 A1MDA H14 H14 H 0 1 N N N N N N -21.657 -11.251 -5.702 -4.188 0.775 0.774 H14 A1MDA 40 A1MDA H15 H15 H 0 1 N N N N N N -20.282 -10.659 -4.709 -3.809 0.505 -0.944 H15 A1MDA 41 A1MDA H16 H16 H 0 1 N N N N N N -22.001 -9.322 -3.324 -4.844 -1.745 -0.818 H16 A1MDA 42 A1MDA H17 H17 H 0 1 N N N N N N -23.288 -10.208 -4.209 -5.223 -1.475 0.900 H17 A1MDA 43 A1MDA H18 H18 H 0 1 N N N N N N -19.692 -13.000 -1.171 -8.201 2.224 0.561 H18 A1MDA 44 A1MDA H19 H19 H 0 1 N N N N N N -21.645 -14.368 -0.444 -9.554 1.552 -1.384 H19 A1MDA 45 A1MDA H20 H20 H 0 1 N N N N N N -23.927 -13.826 -1.282 -8.811 -0.371 -2.774 H20 A1MDA 46 A1MDA H21 H21 H 0 1 N N N N N N -24.225 -11.915 -2.883 -6.711 -1.548 -2.152 H21 A1MDA 47 A1MDA H22 H22 H 0 1 N N N N N N -22.975 -8.457 -5.271 -1.624 1.035 0.988 H22 A1MDA 48 A1MDA H23 H23 H 0 1 N N N N N N -23.125 -9.747 -6.512 -1.518 0.630 -0.741 H23 A1MDA 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MDA O08 C07 DOUB N N 1 A1MDA C07 N09 SING N N 2 A1MDA C07 S06 SING N N 3 A1MDA N09 C10 SING N N 4 A1MDA S06 C05 SING N N 5 A1MDA C10 C05 SING Y N 6 A1MDA C10 C11 DOUB Y N 7 A1MDA C05 C04 DOUB Y N 8 A1MDA C11 C12 SING Y N 9 A1MDA C04 N03 SING N N 10 A1MDA C04 C13 SING Y N 11 A1MDA N03 C02 SING N N 12 A1MDA C12 C13 DOUB Y N 13 A1MDA C02 C14 SING N N 14 A1MDA C02 O01 DOUB N N 15 A1MDA C14 C15 SING N N 16 A1MDA C14 C27 SING N N 17 A1MDA C15 C16 SING N N 18 A1MDA C16 C17 SING N N 19 A1MDA C27 N18 SING N N 20 A1MDA N18 C17 SING N N 21 A1MDA N18 C19 SING N N 22 A1MDA C19 C20 SING N N 23 A1MDA C20 C21 SING N N 24 A1MDA C21 C26 SING Y N 25 A1MDA C21 N22 DOUB Y N 26 A1MDA C26 C25 DOUB Y N 27 A1MDA N22 C23 SING Y N 28 A1MDA C25 C24 SING Y N 29 A1MDA C23 C24 DOUB Y N 30 A1MDA C11 H1 SING N N 31 A1MDA C12 H2 SING N N 32 A1MDA C13 H3 SING N N 33 A1MDA C14 H4 SING N N 34 A1MDA C15 H5 SING N N 35 A1MDA C15 H6 SING N N 36 A1MDA N03 H7 SING N N 37 A1MDA N09 H8 SING N N 38 A1MDA C16 H9 SING N N 39 A1MDA C16 H10 SING N N 40 A1MDA C17 H11 SING N N 41 A1MDA C17 H12 SING N N 42 A1MDA C19 H14 SING N N 43 A1MDA C19 H15 SING N N 44 A1MDA C20 H16 SING N N 45 A1MDA C20 H17 SING N N 46 A1MDA C23 H18 SING N N 47 A1MDA C24 H19 SING N N 48 A1MDA C25 H20 SING N N 49 A1MDA C26 H21 SING N N 50 A1MDA C27 H22 SING N N 51 A1MDA C27 H23 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MDA InChI InChI 1.06 "InChI=1S/C20H22N4O2S/c25-19(22-16-7-3-8-17-18(16)27-20(26)23-17)14-5-4-11-24(13-14)12-9-15-6-1-2-10-21-15/h1-3,6-8,10,14H,4-5,9,11-13H2,(H,22,25)(H,23,26)/t14-/m0/s1" A1MDA InChIKey InChI 1.06 SMTOBJROPLIKDA-AWEZNQCLSA-N A1MDA SMILES_CANONICAL CACTVS 3.385 "O=C1Nc2cccc(NC(=O)[C@H]3CCCN(CCc4ccccn4)C3)c2S1" A1MDA SMILES CACTVS 3.385 "O=C1Nc2cccc(NC(=O)[CH]3CCCN(CCc4ccccn4)C3)c2S1" A1MDA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)CCN2CCC[C@@H](C2)C(=O)Nc3cccc4c3SC(=O)N4" A1MDA SMILES "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)CCN2CCCC(C2)C(=O)Nc3cccc4c3SC(=O)N4" # _pdbx_chem_comp_identifier.comp_id A1MDA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-~{N}-(2-oxidanylidene-3~{H}-1,3-benzothiazol-7-yl)-1-(2-pyridin-2-ylethyl)piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MDA "Create component" 2025-12-23 PDBJ A1MDA "Initial release" 2026-03-11 RCSB #