data_A1MDB # _chem_comp.id A1MDB _chem_comp.name "3-[[[(1~{R},3~{S})-3-(1,3-thiazol-2-ylcarbamoyl)cyclohexyl]amino]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-12-23 _chem_comp.pdbx_modified_date 2026-03-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.458 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MDB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 21NL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MDB C11 C1 C 0 1 N N R N N N -5.587 -17.543 9.173 -0.402 -0.993 -0.705 C11 A1MDB 1 A1MDB C12 C2 C 0 1 N N N N N N -5.285 -16.565 10.290 -0.435 -2.289 0.108 C12 A1MDB 2 A1MDB C13 C3 C 0 1 N N N N N N -3.796 -16.360 10.653 0.833 -3.098 -0.169 C13 A1MDB 3 A1MDB C14 C4 C 0 1 N N N N N N -3.035 -15.955 9.338 2.060 -2.277 0.231 C14 A1MDB 4 A1MDB C15 C5 C 0 1 N N S N N N -3.310 -17.074 8.331 2.094 -0.981 -0.583 C15 A1MDB 5 A1MDB N01 N1 N 0 1 N N N N N N -9.397 -19.901 3.964 -8.038 0.781 1.539 N01 A1MDB 6 A1MDB C02 C6 C 0 1 N N N N N N -10.491 -19.199 4.512 -6.938 0.048 1.276 C02 A1MDB 7 A1MDB O03 O1 O 0 1 N N N N N N -11.526 -19.214 3.899 -6.733 -0.982 1.889 O03 A1MDB 8 A1MDB C04 C7 C 0 1 Y N N N N N -10.350 -18.552 5.895 -5.981 0.497 0.243 C04 A1MDB 9 A1MDB C05 C8 C 0 1 Y N N N N N -11.500 -18.478 6.715 -6.210 1.682 -0.458 C05 A1MDB 10 A1MDB C06 C9 C 0 1 Y N N N N N -11.415 -17.884 7.968 -5.312 2.095 -1.420 C06 A1MDB 11 A1MDB C07 C10 C 0 1 Y N N N N N -10.156 -17.381 8.401 -4.186 1.338 -1.691 C07 A1MDB 12 A1MDB C08 C11 C 0 1 Y N N N N N -9.041 -17.459 7.568 -3.953 0.163 -1.000 C08 A1MDB 13 A1MDB C09 C12 C 0 1 N N N N N N -7.728 -16.865 8.050 -2.724 -0.655 -1.302 C09 A1MDB 14 A1MDB N10 N2 N 0 1 N N N N N N -7.023 -17.776 8.961 -1.619 -0.216 -0.438 N10 A1MDB 15 A1MDB C16 C13 C 0 1 N N N N N N -4.787 -17.234 7.893 0.826 -0.172 -0.305 C16 A1MDB 16 A1MDB C17 C14 C 0 1 N N N N N N -2.386 -16.940 7.163 3.303 -0.172 -0.189 C17 A1MDB 17 A1MDB O18 O2 O 0 1 N N N N N N -2.791 -16.524 6.132 3.163 0.943 0.269 O18 A1MDB 18 A1MDB N19 N3 N 0 1 N N N N N N -1.082 -17.339 7.345 4.538 -0.687 -0.345 N19 A1MDB 19 A1MDB C20 C15 C 0 1 Y N N N N N -0.159 -17.232 6.248 5.653 0.060 0.018 C20 A1MDB 20 A1MDB N21 N4 N 0 1 Y N N N N N 1.135 -17.680 6.368 6.881 -0.339 -0.091 N21 A1MDB 21 A1MDB C22 C16 C 0 1 Y N N N N N 1.859 -17.431 5.101 7.820 0.501 0.303 C22 A1MDB 22 A1MDB C23 C17 C 0 1 Y N N N N N 1.005 -16.828 4.143 7.363 1.666 0.767 C23 A1MDB 23 A1MDB S24 S1 S 0 1 Y N N N N N -0.488 -16.627 4.742 5.604 1.641 0.666 S24 A1MDB 24 A1MDB C25 C18 C 0 1 Y N N N N N -9.102 -18.074 6.333 -4.840 -0.259 -0.031 C25 A1MDB 25 A1MDB H1 H1 H 0 1 N N N N N N -5.186 -18.505 9.525 -0.349 -1.232 -1.767 H1 A1MDB 26 A1MDB H2 H2 H 0 1 N N N N N N -5.694 -15.587 9.996 -0.488 -2.050 1.171 H2 A1MDB 27 A1MDB H3 H3 H 0 1 N N N N N N -5.802 -16.921 11.193 -1.309 -2.874 -0.176 H3 A1MDB 28 A1MDB H4 H4 H 0 1 N N N N N N -3.377 -17.294 11.056 0.809 -4.021 0.410 H4 A1MDB 29 A1MDB H5 H5 H 0 1 N N N N N N -3.700 -15.561 11.403 0.886 -3.337 -1.231 H5 A1MDB 30 A1MDB H6 H6 H 0 1 N N N N N N -1.955 -15.871 9.531 2.007 -2.038 1.293 H6 A1MDB 31 A1MDB H7 H7 H 0 1 N N N N N N -3.415 -14.996 8.957 2.964 -2.853 0.033 H7 A1MDB 32 A1MDB H8 H8 H 0 1 N N N N N N -3.041 -18.013 8.837 2.147 -1.220 -1.645 H8 A1MDB 33 A1MDB H9 H9 H 0 1 N N N N N N -9.499 -20.387 3.096 -8.202 1.602 1.051 H9 A1MDB 34 A1MDB H10 H10 H 0 1 N N N N N N -8.519 -19.912 4.443 -8.667 0.486 2.217 H10 A1MDB 35 A1MDB H11 H11 H 0 1 N N N N N N -12.440 -18.881 6.369 -7.089 2.274 -0.247 H11 A1MDB 36 A1MDB H12 H12 H 0 1 N N N N N N -12.287 -17.806 8.601 -5.489 3.012 -1.963 H12 A1MDB 37 A1MDB H13 H13 H 0 1 N N N N N N -10.064 -16.936 9.381 -3.487 1.666 -2.446 H13 A1MDB 38 A1MDB H14 H14 H 0 1 N N N N N N -7.086 -16.664 7.179 -2.934 -1.709 -1.115 H14 A1MDB 39 A1MDB H15 H15 H 0 1 N N N N N N -7.935 -15.922 8.578 -2.444 -0.520 -2.346 H15 A1MDB 40 A1MDB H16 H16 H 0 1 N N N N N N -7.472 -17.715 9.853 -1.448 0.772 -0.545 H16 A1MDB 41 A1MDB H18 H18 H 0 1 N N N N N N -5.150 -16.304 7.432 0.849 0.751 -0.884 H18 A1MDB 42 A1MDB H19 H19 H 0 1 N N N N N N -4.884 -18.061 7.175 0.772 0.067 0.757 H19 A1MDB 43 A1MDB H20 H20 H 0 1 N N N N N N -0.780 -17.698 8.228 4.650 -1.578 -0.711 H20 A1MDB 44 A1MDB H21 H21 H 0 1 N N N N N N 2.897 -17.675 4.930 8.873 0.265 0.255 H21 A1MDB 45 A1MDB H22 H22 H 0 1 N N N N N N 1.309 -16.541 3.147 7.966 2.483 1.135 H22 A1MDB 46 A1MDB H23 H23 H 0 1 N N N N N N -8.218 -18.185 5.722 -4.655 -1.175 0.510 H23 A1MDB 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MDB O03 C02 DOUB N N 1 A1MDB N01 C02 SING N N 2 A1MDB C23 S24 SING Y N 3 A1MDB C23 C22 DOUB Y N 4 A1MDB C02 C04 SING N N 5 A1MDB S24 C20 SING Y N 6 A1MDB C22 N21 SING Y N 7 A1MDB C04 C25 DOUB Y N 8 A1MDB C04 C05 SING Y N 9 A1MDB O18 C17 DOUB N N 10 A1MDB C20 N21 DOUB Y N 11 A1MDB C20 N19 SING N N 12 A1MDB C25 C08 SING Y N 13 A1MDB C05 C06 DOUB Y N 14 A1MDB C17 N19 SING N N 15 A1MDB C17 C15 SING N N 16 A1MDB C08 C09 SING N N 17 A1MDB C08 C07 DOUB Y N 18 A1MDB C16 C15 SING N N 19 A1MDB C16 C11 SING N N 20 A1MDB C06 C07 SING Y N 21 A1MDB C09 N10 SING N N 22 A1MDB C15 C14 SING N N 23 A1MDB N10 C11 SING N N 24 A1MDB C11 C12 SING N N 25 A1MDB C14 C13 SING N N 26 A1MDB C12 C13 SING N N 27 A1MDB C11 H1 SING N N 28 A1MDB C12 H2 SING N N 29 A1MDB C12 H3 SING N N 30 A1MDB C13 H4 SING N N 31 A1MDB C13 H5 SING N N 32 A1MDB C14 H6 SING N N 33 A1MDB C14 H7 SING N N 34 A1MDB C15 H8 SING N N 35 A1MDB N01 H9 SING N N 36 A1MDB N01 H10 SING N N 37 A1MDB C05 H11 SING N N 38 A1MDB C06 H12 SING N N 39 A1MDB C07 H13 SING N N 40 A1MDB C09 H14 SING N N 41 A1MDB C09 H15 SING N N 42 A1MDB N10 H16 SING N N 43 A1MDB C16 H18 SING N N 44 A1MDB C16 H19 SING N N 45 A1MDB N19 H20 SING N N 46 A1MDB C22 H21 SING N N 47 A1MDB C23 H22 SING N N 48 A1MDB C25 H23 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MDB InChI InChI 1.06 "InChI=1S/C18H22N4O2S/c19-16(23)13-4-1-3-12(9-13)11-21-15-6-2-5-14(10-15)17(24)22-18-20-7-8-25-18/h1,3-4,7-9,14-15,21H,2,5-6,10-11H2,(H2,19,23)(H,20,22,24)/t14-,15+/m0/s1" A1MDB InChIKey InChI 1.06 IQLRBEZTUOTUQI-LSDHHAIUSA-N A1MDB SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1cccc(CN[C@@H]2CCC[C@@H](C2)C(=O)Nc3sccn3)c1" A1MDB SMILES CACTVS 3.385 "NC(=O)c1cccc(CN[CH]2CCC[CH](C2)C(=O)Nc3sccn3)c1" A1MDB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)CN[C@@H]2CCC[C@@H](C2)C(=O)Nc3nccs3" A1MDB SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)N)CNC2CCCC(C2)C(=O)Nc3nccs3" # _pdbx_chem_comp_identifier.comp_id A1MDB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[[(1~{R},3~{S})-3-(1,3-thiazol-2-ylcarbamoyl)cyclohexyl]amino]methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MDB "Create component" 2025-12-23 PDBJ A1MDB "Initial release" 2026-03-11 RCSB #