data_A1MDL # _chem_comp.id A1MDL _chem_comp.name "7-[(3~{R})-3-fluoranylpyrrolidin-1-yl]-5-methoxy-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[3,4,5-tris(fluoranyl)phenyl]methyl]pyrido[4,3-d]pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H21 F4 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-01-21 _chem_comp.pdbx_modified_date 2026-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MDL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 22DR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MDL C11 C1 C 0 1 N N N N N N 6.314 9.067 -5.481 3.330 3.888 -0.222 C11 A1MDL 1 A1MDL C12 C2 C 0 1 Y N N N N N 7.449 10.120 -2.103 1.239 0.921 -0.803 C12 A1MDL 2 A1MDL C13 C3 C 0 1 Y N N N N N 8.292 9.674 -1.084 0.006 0.499 -0.339 C13 A1MDL 3 A1MDL C14 C4 C 0 1 Y N N N N N 9.219 8.603 -1.379 -0.692 1.326 0.568 C14 A1MDL 4 A1MDL C15 C5 C 0 1 N N N N N N 10.139 8.094 -0.305 -1.998 0.872 1.055 C15 A1MDL 5 A1MDL C01 C6 C 0 1 N N N N N N 10.546 6.979 -4.479 -0.133 4.563 2.205 C01 A1MDL 6 A1MDL O02 O1 O 0 1 N N N N N N 10.039 7.047 -3.092 -0.777 3.341 1.839 O02 A1MDL 7 A1MDL C03 C7 C 0 1 Y N N N N N 9.206 8.064 -2.710 -0.121 2.537 0.970 C03 A1MDL 8 A1MDL N04 N1 N 0 1 Y N N N N N 8.352 8.520 -3.669 1.063 2.896 0.498 N04 A1MDL 9 A1MDL C05 C8 C 0 1 Y N N N N N 7.485 9.567 -3.388 1.744 2.137 -0.353 C05 A1MDL 10 A1MDL N06 N2 N 0 1 N N N N N N 6.583 10.025 -4.354 2.978 2.570 -0.809 N06 A1MDL 11 A1MDL C07 C9 C 0 1 N N N N N N 5.081 10.485 -4.068 4.052 1.643 -0.392 C07 A1MDL 12 A1MDL C08 C10 C 0 1 N N N N N N 4.212 10.062 -5.295 5.308 2.495 -0.131 C08 A1MDL 13 A1MDL C09 C11 C 0 1 N N R N N N 5.323 9.860 -6.340 4.869 3.953 -0.395 C09 A1MDL 14 A1MDL F10 F1 F 0 1 N N N N N N 5.867 11.060 -6.666 5.205 4.344 -1.695 F10 A1MDL 15 A1MDL O16 O2 O 0 1 N N N N N N 10.957 7.193 -0.474 -2.642 1.546 1.838 O16 A1MDL 16 A1MDL N17 N3 N 0 1 N N N N N N 10.082 8.701 1.032 -2.469 -0.314 0.611 N17 A1MDL 17 A1MDL C18 C12 C 0 1 N N N N N N 10.980 8.176 2.103 -3.772 -0.790 1.082 C18 A1MDL 18 A1MDL C19 C13 C 0 1 Y N N N N N 11.916 9.116 2.598 -4.853 -0.294 0.156 C19 A1MDL 19 A1MDL N20 N4 N 0 1 Y N N N N N 12.495 8.967 3.856 -5.300 -0.933 -0.924 N20 A1MDL 20 A1MDL C21 C14 C 0 1 Y N N N N N 13.345 10.048 3.970 -6.239 -0.227 -1.500 C21 A1MDL 21 A1MDL N22 N5 N 0 1 Y N N N N N 13.283 10.834 2.770 -6.412 0.899 -0.786 N22 A1MDL 22 A1MDL C23 C15 C 0 1 N N N N N N 14.047 12.095 2.489 -7.361 1.979 -1.067 C23 A1MDL 23 A1MDL N24 N6 N 0 1 Y N N N N N 12.374 10.216 1.907 -5.507 0.830 0.285 N24 A1MDL 24 A1MDL C25 C16 C 0 1 N N N N N N 9.131 9.773 1.284 -1.769 -1.065 -0.253 C25 A1MDL 25 A1MDL O26 O3 O 0 1 N N N N N N 9.041 10.324 2.376 -2.241 -2.124 -0.619 O26 A1MDL 26 A1MDL N27 N7 N 0 1 N N N N N N 8.251 10.232 0.196 -0.566 -0.697 -0.730 N27 A1MDL 27 A1MDL C28 C17 C 0 1 N N N N N N 7.410 11.417 0.559 0.141 -1.569 -1.671 C28 A1MDL 28 A1MDL C29 C18 C 0 1 Y N N N N N 6.053 11.274 0.857 1.019 -2.527 -0.907 C29 A1MDL 29 A1MDL C30 C19 C 0 1 Y N N N N N 5.531 10.054 1.252 0.518 -3.752 -0.506 C30 A1MDL 30 A1MDL C31 C20 C 0 1 Y N N N N N 4.177 10.007 1.574 1.323 -4.633 0.196 C31 A1MDL 31 A1MDL F32 F2 F 0 1 N N N N N N 3.648 8.885 1.970 0.834 -5.830 0.587 F32 A1MDL 32 A1MDL C33 C21 C 0 1 Y N N N N N 3.350 11.115 1.501 2.631 -4.286 0.497 C33 A1MDL 33 A1MDL F34 F3 F 0 1 N N N N N N 2.041 11.016 1.811 3.417 -5.145 1.182 F34 A1MDL 34 A1MDL C35 C22 C 0 1 Y N N N N N 3.919 12.321 1.080 3.130 -3.058 0.094 C35 A1MDL 35 A1MDL F36 F4 F 0 1 N N N N N N 3.151 13.427 0.975 4.405 -2.718 0.386 F36 A1MDL 36 A1MDL C37 C23 C 0 1 Y N N N N N 5.271 12.407 0.759 2.324 -2.182 -0.612 C37 A1MDL 37 A1MDL H1 H1 H 0 1 N N N N N N 5.866 8.132 -5.113 2.847 4.696 -0.772 H1 A1MDL 38 A1MDL H2 H2 H 0 1 N N N N N N 7.234 8.838 -6.039 3.057 3.925 0.832 H2 A1MDL 39 A1MDL H3 H3 H 0 1 N N N N N N 6.749 10.915 -1.894 1.802 0.315 -1.497 H3 A1MDL 40 A1MDL H4 H4 H 0 1 N N N N N N 11.195 6.098 -4.590 0.031 5.168 1.314 H4 A1MDL 41 A1MDL H5 H5 H 0 1 N N N N N N 9.698 6.900 -5.176 -0.764 5.111 2.905 H5 A1MDL 42 A1MDL H6 H6 H 0 1 N N N N N N 11.122 7.889 -4.704 0.825 4.342 2.676 H6 A1MDL 43 A1MDL H7 H7 H 0 1 N N N N N N 5.042 11.577 -3.940 3.760 1.123 0.520 H7 A1MDL 44 A1MDL H8 H8 H 0 1 N N N N N N 4.706 9.995 -3.157 4.248 0.920 -1.185 H8 A1MDL 45 A1MDL H9 H9 H 0 1 N N N N N N 3.509 10.854 -5.592 5.636 2.379 0.902 H9 A1MDL 46 A1MDL H10 H10 H 0 1 N N N N N N 3.656 9.132 -5.103 6.108 2.209 -0.815 H10 A1MDL 47 A1MDL H11 H11 H 0 1 N N N N N N 4.968 9.270 -7.198 5.311 4.628 0.338 H11 A1MDL 48 A1MDL H12 H12 H 0 1 N N N N N N 10.354 7.840 2.943 -3.777 -1.880 1.096 H12 A1MDL 49 A1MDL H13 H13 H 0 1 N N N N N N 11.536 7.319 1.695 -3.955 -0.412 2.088 H13 A1MDL 50 A1MDL H14 H14 H 0 1 N N N N N N 13.961 10.269 4.829 -6.780 -0.501 -2.394 H14 A1MDL 51 A1MDL H15 H15 H 0 1 N N N N N N 13.784 12.469 1.489 -8.305 1.774 -0.563 H15 A1MDL 52 A1MDL H16 H16 H 0 1 N N N N N N 13.791 12.854 3.243 -6.953 2.923 -0.706 H16 A1MDL 53 A1MDL H17 H17 H 0 1 N N N N N N 15.126 11.886 2.530 -7.530 2.044 -2.142 H17 A1MDL 54 A1MDL H18 H18 H 0 1 N N N N N N 7.878 11.873 1.444 -0.583 -2.132 -2.260 H18 A1MDL 55 A1MDL H19 H19 H 0 1 N N N N N N 7.472 12.115 -0.289 0.758 -0.963 -2.335 H19 A1MDL 56 A1MDL H20 H20 H 0 1 N N N N N N 6.151 9.171 1.308 -0.501 -4.021 -0.741 H20 A1MDL 57 A1MDL H21 H21 H 0 1 N N N N N N 5.701 13.345 0.439 2.714 -1.226 -0.929 H21 A1MDL 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MDL F10 C09 SING N N 1 A1MDL C09 C11 SING N N 2 A1MDL C09 C08 SING N N 3 A1MDL C11 N06 SING N N 4 A1MDL C08 C07 SING N N 5 A1MDL C01 O02 SING N N 6 A1MDL N06 C07 SING N N 7 A1MDL N06 C05 SING N N 8 A1MDL N04 C05 DOUB Y N 9 A1MDL N04 C03 SING Y N 10 A1MDL C05 C12 SING Y N 11 A1MDL O02 C03 SING N N 12 A1MDL C03 C14 DOUB Y N 13 A1MDL C12 C13 DOUB Y N 14 A1MDL C14 C13 SING Y N 15 A1MDL C14 C15 SING N N 16 A1MDL C13 N27 SING N N 17 A1MDL O16 C15 DOUB N N 18 A1MDL C15 N17 SING N N 19 A1MDL N27 C28 SING N N 20 A1MDL N27 C25 SING N N 21 A1MDL C28 C29 SING N N 22 A1MDL C37 C29 DOUB Y N 23 A1MDL C37 C35 SING Y N 24 A1MDL C29 C30 SING Y N 25 A1MDL F36 C35 SING N N 26 A1MDL N17 C25 SING N N 27 A1MDL N17 C18 SING N N 28 A1MDL C35 C33 DOUB Y N 29 A1MDL C30 C31 DOUB Y N 30 A1MDL C25 O26 DOUB N N 31 A1MDL C33 C31 SING Y N 32 A1MDL C33 F34 SING N N 33 A1MDL C31 F32 SING N N 34 A1MDL N24 C19 DOUB Y N 35 A1MDL N24 N22 SING Y N 36 A1MDL C18 C19 SING N N 37 A1MDL C23 N22 SING N N 38 A1MDL C19 N20 SING Y N 39 A1MDL N22 C21 SING Y N 40 A1MDL N20 C21 DOUB Y N 41 A1MDL C11 H1 SING N N 42 A1MDL C11 H2 SING N N 43 A1MDL C12 H3 SING N N 44 A1MDL C01 H4 SING N N 45 A1MDL C01 H5 SING N N 46 A1MDL C01 H6 SING N N 47 A1MDL C07 H7 SING N N 48 A1MDL C07 H8 SING N N 49 A1MDL C08 H9 SING N N 50 A1MDL C08 H10 SING N N 51 A1MDL C09 H11 SING N N 52 A1MDL C18 H12 SING N N 53 A1MDL C18 H13 SING N N 54 A1MDL C21 H14 SING N N 55 A1MDL C23 H15 SING N N 56 A1MDL C23 H16 SING N N 57 A1MDL C23 H17 SING N N 58 A1MDL C28 H18 SING N N 59 A1MDL C28 H19 SING N N 60 A1MDL C30 H20 SING N N 61 A1MDL C37 H21 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MDL InChI InChI 1.06 "InChI=1S/C23H21F4N7O3/c1-31-11-28-17(30-31)10-34-22(35)19-16(7-18(29-21(19)37-2)32-4-3-13(24)9-32)33(23(34)36)8-12-5-14(25)20(27)15(26)6-12/h5-7,11,13H,3-4,8-10H2,1-2H3/t13-/m1/s1" A1MDL InChIKey InChI 1.06 QMMLYKGKFOSNGU-CYBMUJFWSA-N A1MDL SMILES_CANONICAL CACTVS 3.385 "COc1nc(cc2N(Cc3cc(F)c(F)c(F)c3)C(=O)N(Cc4ncn(C)n4)C(=O)c12)N5CC[C@@H](F)C5" A1MDL SMILES CACTVS 3.385 "COc1nc(cc2N(Cc3cc(F)c(F)c(F)c3)C(=O)N(Cc4ncn(C)n4)C(=O)c12)N5CC[CH](F)C5" A1MDL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cnc(n1)CN2C(=O)c3c(cc(nc3OC)N4CC[C@H](C4)F)N(C2=O)Cc5cc(c(c(c5)F)F)F" A1MDL SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cnc(n1)CN2C(=O)c3c(cc(nc3OC)N4CCC(C4)F)N(C2=O)Cc5cc(c(c(c5)F)F)F" # _pdbx_chem_comp_identifier.comp_id A1MDL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[(3~{R})-3-fluoranylpyrrolidin-1-yl]-5-methoxy-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[3,4,5-tris(fluoranyl)phenyl]methyl]pyrido[4,3-d]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MDL "Create component" 2026-01-21 PDBJ A1MDL "Initial release" 2026-03-25 RCSB #