data_A1MDN # _chem_comp.id A1MDN _chem_comp.name "(~{Z},2~{S})-2-azanyl-2-methyl-oct-6-enoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H17 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-01-21 _chem_comp.pdbx_modified_date 2026-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 171.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MDN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 22IZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MDN N N1 N 0 1 N N N Y Y N -9.249 -10.531 2.416 -1.352 0.680 1.519 N A1MDN 1 A1MDN CA C1 C 0 1 N N S N Y N -10.550 -10.941 2.039 -1.541 0.386 0.092 CA A1MDN 2 A1MDN C C2 C 0 1 N N N N Y Y -11.658 -10.486 2.936 -2.737 -0.513 -0.081 C A1MDN 3 A1MDN O O1 O 0 1 N N N N Y Y -12.782 -10.488 2.523 -2.739 -1.357 -0.946 O A1MDN 4 A1MDN C01 C3 C 0 1 N N N N N N -6.647 -15.953 2.128 4.374 -1.252 0.680 C01 A1MDN 5 A1MDN C02 C4 C 0 1 N N N N N N -7.771 -16.319 1.160 4.418 0.182 0.219 C02 A1MDN 6 A1MDN C03 C5 C 0 1 N N N N N N -8.994 -15.813 1.227 3.400 0.693 -0.428 C03 A1MDN 7 A1MDN C04 C6 C 0 1 N N N N N N -9.478 -14.803 2.272 2.186 -0.153 -0.712 C04 A1MDN 8 A1MDN C05 C7 C 0 1 N N N N N N -9.892 -13.487 1.589 0.939 0.546 -0.166 C05 A1MDN 9 A1MDN C06 C8 C 0 1 N N N N N N -10.484 -12.417 2.536 -0.294 -0.313 -0.454 C06 A1MDN 10 A1MDN C08 C9 C 0 1 N N N N N N -10.850 -11.296 0.616 -1.770 1.692 -0.672 C08 A1MDN 11 A1MDN OXT O2 O 0 1 N Y N N Y Y -11.319 -9.946 4.104 -3.802 -0.378 0.726 OXT A1MDN 12 A1MDN H H1 H 0 1 N N N Y Y N -9.232 -10.335 3.397 -1.199 -0.167 2.046 H A1MDN 13 A1MDN H2 H2 H 0 1 N Y N Y Y N -8.597 -11.261 2.210 -0.595 1.334 1.657 H2 A1MDN 14 A1MDN H4 H4 H 0 1 N N N N N N -5.736 -16.507 1.859 3.533 -1.390 1.360 H4 A1MDN 15 A1MDN H5 H5 H 0 1 N N N N N N -6.450 -14.872 2.069 4.254 -1.908 -0.182 H5 A1MDN 16 A1MDN H6 H6 H 0 1 N N N N N N -6.946 -16.216 3.153 5.303 -1.497 1.196 H6 A1MDN 17 A1MDN H7 H7 H 0 1 N N N N N N -7.557 -17.031 0.376 5.289 0.788 0.422 H7 A1MDN 18 A1MDN H8 H8 H 0 1 N N N N N N -9.707 -16.139 0.485 3.432 1.721 -0.759 H8 A1MDN 19 A1MDN H9 H9 H 0 1 N N N N N N -10.342 -15.221 2.808 2.083 -0.291 -1.788 H9 A1MDN 20 A1MDN H10 H10 H 0 1 N N N N N N -8.666 -14.602 2.986 2.299 -1.124 -0.229 H10 A1MDN 21 A1MDN H11 H11 H 0 1 N N N N N N -9.002 -13.059 1.105 1.042 0.685 0.910 H11 A1MDN 22 A1MDN H12 H12 H 0 1 N N N N N N -11.513 -12.726 2.773 -0.181 -1.284 0.029 H12 A1MDN 23 A1MDN H13 H13 H 0 1 N N N N N N -11.907 -11.587 0.525 -0.904 2.343 -0.546 H13 A1MDN 24 A1MDN H14 H14 H 0 1 N N N N N N -10.653 -10.426 -0.028 -1.910 1.474 -1.730 H14 A1MDN 25 A1MDN H15 H15 H 0 1 N N N N N N -10.211 -12.135 0.305 -2.658 2.190 -0.283 H15 A1MDN 26 A1MDN HXT H16 H 0 1 N Y N N Y Y -12.091 -9.584 4.522 -4.545 -0.978 0.576 HXT A1MDN 27 A1MDN H3 H3 H 0 1 N N N N N N -10.648 -13.722 0.825 0.826 1.517 -0.648 H3 A1MDN 28 A1MDN H17 H17 H 0 1 N N N N N N -9.878 -12.424 3.454 -0.397 -0.451 -1.530 H17 A1MDN 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MDN C08 CA SING N N 1 A1MDN C02 C03 DOUB N Z 2 A1MDN C02 C01 SING N N 3 A1MDN C03 C04 SING N N 4 A1MDN C05 C04 SING N N 5 A1MDN C05 C06 SING N N 6 A1MDN CA N SING N N 7 A1MDN CA C06 SING N N 8 A1MDN CA C SING N N 9 A1MDN O C DOUB N N 10 A1MDN C OXT SING N N 11 A1MDN N H SING N N 12 A1MDN N H2 SING N N 13 A1MDN C01 H4 SING N N 14 A1MDN C01 H5 SING N N 15 A1MDN C01 H6 SING N N 16 A1MDN C02 H7 SING N N 17 A1MDN C03 H8 SING N N 18 A1MDN C04 H9 SING N N 19 A1MDN C04 H10 SING N N 20 A1MDN C05 H11 SING N N 21 A1MDN C06 H12 SING N N 22 A1MDN C08 H13 SING N N 23 A1MDN C08 H14 SING N N 24 A1MDN C08 H15 SING N N 25 A1MDN OXT HXT SING N N 26 A1MDN C05 H3 SING N N 27 A1MDN C06 H17 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MDN InChI InChI 1.06 "InChI=1S/C9H17NO2/c1-3-4-5-6-7-9(2,10)8(11)12/h3-4H,5-7,10H2,1-2H3,(H,11,12)/b4-3-/t9-/m0/s1" A1MDN InChIKey InChI 1.06 PJKCNHUZARODMW-TYRPZCRBSA-N A1MDN SMILES_CANONICAL CACTVS 3.385 "C\C=C/CCC[C@](C)(N)C(O)=O" A1MDN SMILES CACTVS 3.385 "CC=CCCC[C](C)(N)C(O)=O" A1MDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C\CCC[C@@](C)(C(=O)O)N" A1MDN SMILES "OpenEye OEToolkits" 2.0.7 "CC=CCCCC(C)(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id A1MDN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{Z},2~{S})-2-azanyl-2-methyl-oct-6-enoic acid" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1MDN _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MDN "Create component" 2026-01-21 PDBJ A1MDN "Initial release" 2026-08-26 RCSB #