data_A1MGQ # _chem_comp.id A1MGQ _chem_comp.name "2-[(phenylmethyl)amino]-1~{H}-pyrimidin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H11 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-(benzylamino)pyrimidin-4(3H)-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-04-30 _chem_comp.pdbx_modified_date 2026-09-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 201.225 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MGQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 26FF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MGQ O1 O1 O 0 1 N N N N N N -3.161 2.526 0.161 4.431 -1.662 0.004 O1 A1MGQ 1 A1MGQ C1 C1 C 0 1 N N N N N N -2.921 1.312 0.331 3.635 -0.738 0.002 C1 A1MGQ 2 A1MGQ C2 C2 C 0 1 N N N N N N -3.535 0.460 1.312 4.083 0.595 -0.001 C2 A1MGQ 3 A1MGQ C3 C3 C 0 1 N N N N N N -3.151 -0.869 1.365 3.161 1.600 -0.003 C3 A1MGQ 4 A1MGQ N1 N1 N 0 1 N N N N N N -2.237 -1.412 0.553 1.861 1.314 -0.002 N1 A1MGQ 5 A1MGQ C4 C4 C 0 1 N N N N N N -1.653 -0.626 -0.371 1.433 0.068 0.001 C4 A1MGQ 6 A1MGQ N2 N2 N 0 1 N N N N N N -0.729 -1.144 -1.202 0.086 -0.181 0.001 N2 A1MGQ 7 A1MGQ C5 C5 C 0 1 N N N N N N 0.546 -1.662 -0.730 -0.864 0.933 -0.002 C5 A1MGQ 8 A1MGQ C6 C6 C 0 1 Y N N N N N 1.524 -0.584 -0.323 -2.271 0.393 -0.001 C6 A1MGQ 9 A1MGQ C7 C7 C 0 1 Y N N N N N 2.344 0.021 -1.269 -2.917 0.148 1.197 C7 A1MGQ 10 A1MGQ C8 C8 C 0 1 Y N N N N N 3.245 1.013 -0.894 -4.207 -0.348 1.198 C8 A1MGQ 11 A1MGQ C9 C9 C 0 1 Y N N N N N 3.333 1.408 0.428 -4.852 -0.598 0.001 C9 A1MGQ 12 A1MGQ C10 C10 C 0 1 Y N N N N N 2.522 0.813 1.377 -4.207 -0.352 -1.196 C10 A1MGQ 13 A1MGQ C11 C11 C 0 1 Y N N N N N 1.621 -0.180 1.003 -2.918 0.148 -1.197 C11 A1MGQ 14 A1MGQ N3 N3 N 0 1 N N N N N N -1.976 0.704 -0.491 2.305 -0.976 -0.002 N3 A1MGQ 15 A1MGQ H1 H1 H 0 1 N N N N N N -4.279 0.848 1.992 5.140 0.818 -0.001 H1 A1MGQ 16 A1MGQ H2 H2 H 0 1 N N N N N N -3.616 -1.504 2.104 3.486 2.630 -0.005 H2 A1MGQ 17 A1MGQ H3 H3 H 0 1 N N N N N N -0.927 -1.174 -2.182 -0.238 -1.095 0.003 H3 A1MGQ 18 A1MGQ H4 H4 H 0 1 N N N N N N 0.358 -2.308 0.140 -0.710 1.545 0.887 H4 A1MGQ 19 A1MGQ H5 H5 H 0 1 N N N N N N 1.000 -2.257 -1.537 -0.709 1.541 -0.893 H5 A1MGQ 20 A1MGQ H6 H6 H 0 1 N N N N N N 2.281 -0.282 -2.304 -2.413 0.343 2.132 H6 A1MGQ 21 A1MGQ H7 H7 H 0 1 N N N N N N 3.877 1.476 -1.638 -4.711 -0.540 2.133 H7 A1MGQ 22 A1MGQ H8 H8 H 0 1 N N N N N N 4.032 2.178 0.718 -5.860 -0.985 0.002 H8 A1MGQ 23 A1MGQ H9 H9 H 0 1 N N N N N N 2.588 1.119 2.411 -4.711 -0.548 -2.132 H9 A1MGQ 24 A1MGQ H10 H10 H 0 1 N N N N N N 0.992 -0.641 1.750 -2.416 0.343 -2.133 H10 A1MGQ 25 A1MGQ H11 H11 H 0 1 N N N N N N -1.518 1.252 -1.191 1.974 -1.888 -0.004 H11 A1MGQ 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MGQ O1 C1 DOUB N N 1 A1MGQ C1 C2 SING N N 2 A1MGQ C2 C3 DOUB N N 3 A1MGQ C3 N1 SING N N 4 A1MGQ N1 C4 DOUB N N 5 A1MGQ C4 N2 SING N N 6 A1MGQ N2 C5 SING N N 7 A1MGQ C5 C6 SING N N 8 A1MGQ C6 C7 DOUB Y N 9 A1MGQ C7 C8 SING Y N 10 A1MGQ C8 C9 DOUB Y N 11 A1MGQ C9 C10 SING Y N 12 A1MGQ C10 C11 DOUB Y N 13 A1MGQ C4 N3 SING N N 14 A1MGQ C1 N3 SING N N 15 A1MGQ C6 C11 SING Y N 16 A1MGQ C2 H1 SING N N 17 A1MGQ C3 H2 SING N N 18 A1MGQ N2 H3 SING N N 19 A1MGQ C5 H4 SING N N 20 A1MGQ C5 H5 SING N N 21 A1MGQ C7 H6 SING N N 22 A1MGQ C8 H7 SING N N 23 A1MGQ C9 H8 SING N N 24 A1MGQ C10 H9 SING N N 25 A1MGQ C11 H10 SING N N 26 A1MGQ N3 H11 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MGQ InChI InChI 1.06 "InChI=1S/C11H11N3O/c15-10-6-7-12-11(14-10)13-8-9-4-2-1-3-5-9/h1-7H,8H2,(H2,12,13,14,15)" A1MGQ InChIKey InChI 1.06 AOMUBKDFAOWHFU-UHFFFAOYSA-N A1MGQ SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=NC=C1)NCc2ccccc2" A1MGQ SMILES CACTVS 3.385 "O=C1NC(=NC=C1)NCc2ccccc2" A1MGQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC2=NC=CC(=O)N2" A1MGQ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC2=NC=CC(=O)N2" # _pdbx_chem_comp_identifier.comp_id A1MGQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(phenylmethyl)amino]-1~{H}-pyrimidin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MGQ "Create component" 2026-04-30 PDBJ A1MGQ "Initial release" 2026-09-30 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1MGQ _pdbx_chem_comp_synonyms.name "2-(benzylamino)pyrimidin-4(3H)-one" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #