data_A1MIP # _chem_comp.id A1MIP _chem_comp.name "~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[4-azanyl-5-[2-(3,5-dimethoxyphenyl)ethynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]prop-2-enamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-23 _chem_comp.pdbx_modified_date 2026-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MIP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 43ZY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MIP C02 C1 C 0 1 N N S N N N -22.471 7.780 11.046 -4.932 0.845 -1.144 C02 A1MIP 1 A1MIP C03 C2 C 0 1 N N R N N N -22.600 8.203 12.267 -3.634 1.688 -1.177 C03 A1MIP 2 A1MIP C05 C3 C 0 1 N N R N N N -21.421 7.323 13.076 -3.066 1.465 0.247 C05 A1MIP 3 A1MIP C07 C4 C 0 1 Y N N N N N -19.154 7.751 12.271 -0.683 0.686 0.134 C07 A1MIP 4 A1MIP C08 C5 C 0 1 Y N N N N N -18.123 8.658 12.468 0.565 1.227 0.185 C08 A1MIP 5 A1MIP C09 C6 C 0 1 N N N N N N -16.788 8.605 11.719 1.809 0.525 0.087 C09 A1MIP 6 A1MIP C10 C7 C 0 1 N N N N N N -15.747 8.617 11.210 2.829 -0.051 0.007 C10 A1MIP 7 A1MIP C11 C8 C 0 1 Y N N N N N -14.443 8.742 10.454 4.073 -0.753 -0.091 C11 A1MIP 8 A1MIP C12 C9 C 0 1 Y N N N N N -14.379 9.659 9.395 4.083 -2.140 -0.264 C12 A1MIP 9 A1MIP C13 C10 C 0 1 Y N N N N N -13.194 9.808 8.677 5.289 -2.814 -0.359 C13 A1MIP 10 A1MIP C15 C11 C 0 1 N N N N N N -12.514 11.950 7.746 4.033 -4.819 -0.598 C15 A1MIP 11 A1MIP C16 C12 C 0 1 Y N N N N N -12.111 8.991 9.018 6.485 -2.115 -0.281 C16 A1MIP 12 A1MIP C17 C13 C 0 1 Y N N N N N -12.192 8.065 10.086 6.481 -0.738 -0.109 C17 A1MIP 13 A1MIP C19 C14 C 0 1 N N N N N N -9.859 7.754 9.974 7.577 1.356 0.144 C19 A1MIP 14 A1MIP C20 C15 C 0 1 Y N N N N N -13.372 7.939 10.777 5.280 -0.054 -0.020 C20 A1MIP 15 A1MIP C21 C16 C 0 1 Y N N N N N -19.856 9.204 13.771 -1.005 2.893 0.403 C21 A1MIP 16 A1MIP C22 C17 C 0 1 Y N N N N N -18.564 9.588 13.445 0.382 2.675 0.362 C22 A1MIP 17 A1MIP C23 C18 C 0 1 Y N N N N N -18.024 10.780 14.062 1.241 3.775 0.484 C23 A1MIP 18 A1MIP C26 C19 C 0 1 Y N N N N N -20.027 11.007 15.278 -0.606 5.144 0.669 C26 A1MIP 19 A1MIP C29 C20 C 0 1 N N R N N N -22.053 6.250 11.029 -4.706 -0.153 0.008 C29 A1MIP 20 A1MIP C30 C21 C 0 1 N N N N N N -21.205 5.612 10.171 -4.808 -1.586 -0.517 C30 A1MIP 21 A1MIP C32 C22 C 0 1 N N N N N N -18.967 4.265 10.834 -4.776 -3.852 0.377 C32 A1MIP 22 A1MIP C33 C23 C 0 1 N N N N N N -17.769 3.316 11.289 -4.678 -4.795 1.502 C33 A1MIP 23 A1MIP C34 C24 C 0 1 N N N N N N -18.021 1.960 11.124 -4.743 -6.105 1.280 C34 A1MIP 24 A1MIP N06 N1 N 0 1 Y N N N N N -20.169 8.088 13.060 -1.616 1.675 0.263 N06 A1MIP 25 A1MIP N24 N2 N 0 1 N N N N N N -16.700 11.293 13.757 2.614 3.609 0.449 N24 A1MIP 26 A1MIP N25 N3 N 0 1 Y N N N N N -18.785 11.432 14.951 0.704 4.983 0.635 N25 A1MIP 27 A1MIP N27 N4 N 0 1 Y N N N N N -20.554 9.949 14.693 -1.449 4.140 0.558 N27 A1MIP 28 A1MIP N31 N5 N 0 1 N N N N N N -20.546 4.301 10.625 -4.711 -2.525 0.603 N31 A1MIP 29 A1MIP O01 O1 O 0 1 N N N N N N -23.765 7.950 10.251 -6.062 1.677 -0.871 O01 A1MIP 30 A1MIP O04 O2 O 0 1 N N N N N N -23.928 8.089 12.978 -3.928 3.069 -1.400 O04 A1MIP 31 A1MIP O14 O3 O 0 1 N N N N N N -13.193 10.746 7.630 5.301 -4.163 -0.527 O14 A1MIP 32 A1MIP O18 O4 O 0 1 N N N N N N -11.098 7.229 10.433 7.656 -0.060 -0.033 O18 A1MIP 33 A1MIP O28 O5 O 0 1 N N N N N N -21.364 6.188 12.437 -3.386 0.085 0.525 O28 A1MIP 34 A1MIP O35 O6 O 0 1 N N N N N N -18.711 5.295 11.145 -4.917 -4.270 -0.756 O35 A1MIP 35 A1MIP H021 H1 H 0 0 N N N N N N -21.681 8.335 10.520 -5.070 0.315 -2.087 H021 A1MIP 36 A1MIP H031 H2 H 0 0 N N N N N N -22.282 9.254 12.339 -2.946 1.312 -1.934 H031 A1MIP 37 A1MIP H051 H3 H 0 0 N N N N N N -21.765 7.199 14.113 -3.556 2.124 0.964 H051 A1MIP 38 A1MIP H071 H4 H 0 0 N N N N N N -19.135 6.912 11.591 -0.903 -0.364 0.006 H071 A1MIP 39 A1MIP H121 H5 H 0 0 N N N N N N -15.246 10.248 9.136 3.153 -2.684 -0.324 H121 A1MIP 40 A1MIP H153 H6 H 0 0 N N N N N N -12.640 12.533 6.822 3.481 -4.643 0.326 H153 A1MIP 41 A1MIP H152 H7 H 0 0 N N N N N N -12.919 12.519 8.596 3.466 -4.423 -1.441 H152 A1MIP 42 A1MIP H151 H8 H 0 0 N N N N N N -11.445 11.753 7.912 4.185 -5.889 -0.733 H151 A1MIP 43 A1MIP H161 H9 H 0 0 N N N N N N -11.193 9.068 8.454 7.424 -2.645 -0.355 H161 A1MIP 44 A1MIP H193 H10 H 0 0 N N N N N N -9.043 7.076 10.264 8.583 1.773 0.189 H193 A1MIP 45 A1MIP H192 H11 H 0 0 N N N N N N -9.884 7.849 8.878 7.037 1.798 -0.693 H192 A1MIP 46 A1MIP H191 H12 H 0 0 N N N N N N -9.691 8.744 10.424 7.051 1.577 1.073 H191 A1MIP 47 A1MIP H201 H13 H 0 0 N N N N N N -13.460 7.212 11.571 5.277 1.018 0.108 H201 A1MIP 48 A1MIP H261 H14 H 0 0 N N N N N N -20.594 11.540 16.027 -1.003 6.141 0.794 H261 A1MIP 49 A1MIP H291 H15 H 0 0 N N N N N N -22.986 5.673 11.110 -5.446 0.011 0.791 H291 A1MIP 50 A1MIP H302 H16 H 0 0 N N N N N N -21.776 5.388 9.258 -5.766 -1.721 -1.022 H302 A1MIP 51 A1MIP H301 H17 H 0 0 N N N N N N -20.394 6.317 9.933 -3.998 -1.774 -1.221 H301 A1MIP 52 A1MIP H331 H18 H 0 0 N N N N N N -16.841 3.695 11.691 -4.553 -4.424 2.509 H331 A1MIP 53 A1MIP H342 H19 H 0 0 N N N N N N -17.272 1.234 11.403 -4.671 -6.797 2.106 H342 A1MIP 54 A1MIP H341 H20 H 0 0 N N N N N N -18.966 1.632 10.717 -4.868 -6.476 0.274 H341 A1MIP 55 A1MIP H242 H21 H 0 0 N N N N N N -16.531 12.120 14.292 2.993 2.723 0.338 H242 A1MIP 56 A1MIP H241 H22 H 0 0 N N N N N N -16.014 10.602 13.986 3.198 4.379 0.535 H241 A1MIP 57 A1MIP H311 H23 H 0 0 N N N N N N -21.099 3.484 10.787 -4.598 -2.191 1.507 H311 A1MIP 58 A1MIP H011 H24 H 0 0 N N N N N N -23.637 7.632 9.365 -6.251 2.324 -1.564 H011 A1MIP 59 A1MIP H041 H25 H 0 0 N N N N N N -23.849 8.443 13.856 -4.368 3.247 -2.242 H041 A1MIP 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MIP C02 O01 SING N N 1 A1MIP C03 C02 SING N N 2 A1MIP O04 C03 SING N N 3 A1MIP C05 C03 SING N N 4 A1MIP C08 C07 DOUB Y N 5 A1MIP C09 C08 SING N N 6 A1MIP C10 C09 TRIP N N 7 A1MIP C11 C10 SING N N 8 A1MIP C12 C11 DOUB Y N 9 A1MIP C13 C12 SING Y N 10 A1MIP C15 O14 SING N N 11 A1MIP O14 C13 SING N N 12 A1MIP C16 C13 DOUB Y N 13 A1MIP C17 C16 SING Y N 14 A1MIP C19 O18 SING N N 15 A1MIP O18 C17 SING N N 16 A1MIP C20 C17 DOUB Y N 17 A1MIP C07 N06 SING Y N 18 A1MIP C21 N06 SING Y N 19 A1MIP C22 C21 DOUB Y N 20 A1MIP C23 C22 SING Y N 21 A1MIP N24 C23 SING N N 22 A1MIP N25 C23 DOUB Y N 23 A1MIP C26 N25 SING Y N 24 A1MIP N27 C26 DOUB Y N 25 A1MIP N06 C05 SING N N 26 A1MIP O28 C05 SING N N 27 A1MIP C29 O28 SING N N 28 A1MIP C30 C29 SING N N 29 A1MIP N31 C30 SING N N 30 A1MIP C32 N31 SING N N 31 A1MIP C34 C33 DOUB N N 32 A1MIP C33 C32 SING N N 33 A1MIP O35 C32 DOUB N N 34 A1MIP C02 C29 SING N N 35 A1MIP C08 C22 SING Y N 36 A1MIP C11 C20 SING Y N 37 A1MIP C21 N27 SING Y N 38 A1MIP C02 H021 SING N N 39 A1MIP C03 H031 SING N N 40 A1MIP C05 H051 SING N N 41 A1MIP C07 H071 SING N N 42 A1MIP C12 H121 SING N N 43 A1MIP C15 H153 SING N N 44 A1MIP C15 H152 SING N N 45 A1MIP C15 H151 SING N N 46 A1MIP C16 H161 SING N N 47 A1MIP C19 H193 SING N N 48 A1MIP C19 H192 SING N N 49 A1MIP C19 H191 SING N N 50 A1MIP C20 H201 SING N N 51 A1MIP C26 H261 SING N N 52 A1MIP C29 H291 SING N N 53 A1MIP C30 H302 SING N N 54 A1MIP C30 H301 SING N N 55 A1MIP C33 H331 SING N N 56 A1MIP C34 H342 SING N N 57 A1MIP C34 H341 SING N N 58 A1MIP N24 H242 SING N N 59 A1MIP N24 H241 SING N N 60 A1MIP N31 H311 SING N N 61 A1MIP O01 H011 SING N N 62 A1MIP O04 H041 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MIP InChI InChI 1.06 "InChI=1S/C24H25N5O6/c1-4-18(30)26-10-17-20(31)21(32)24(35-17)29-11-14(19-22(25)27-12-28-23(19)29)6-5-13-7-15(33-2)9-16(8-13)34-3/h4,7-9,11-12,17,20-21,24,31-32H,1,10H2,2-3H3,(H,26,30)(H2,25,27,28)/t17-,20-,21-,24-/m1/s1" A1MIP InChIKey InChI 1.06 RTGXBIIIVWZKOA-FGSUIDRYSA-N A1MIP SMILES_CANONICAL CACTVS 3.385 "COc1cc(OC)cc(c1)C#Cc2cn([C@@H]3O[C@H](CNC(=O)C=C)[C@@H](O)[C@H]3O)c4ncnc(N)c24" A1MIP SMILES CACTVS 3.385 "COc1cc(OC)cc(c1)C#Cc2cn([CH]3O[CH](CNC(=O)C=C)[CH](O)[CH]3O)c4ncnc(N)c24" A1MIP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1)OC)C#Cc2cn(c3c2c(ncn3)N)[C@H]4[C@@H]([C@@H]([C@H](O4)CNC(=O)C=C)O)O" A1MIP SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1)OC)C#Cc2cn(c3c2c(ncn3)N)C4C(C(C(O4)CNC(=O)C=C)O)O" # _pdbx_chem_comp_identifier.comp_id A1MIP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[4-azanyl-5-[2-(3,5-dimethoxyphenyl)ethynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]prop-2-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MIP "Create component" 2026-07-23 PDBJ A1MIP "Initial release" 2026-10-14 RCSB #