data_A1MIQ # _chem_comp.id A1MIQ _chem_comp.name "(2~{R},3~{S},4~{R},5~{R})-2-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-5-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 N7 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-24 _chem_comp.pdbx_modified_date 2026-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.501 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MIQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 44AA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MIQ C10 C1 C 0 1 Y N N N N N -14.260 7.769 11.544 -2.078 0.942 0.837 C10 A1MIQ 1 A1MIQ C11 C2 C 0 1 Y N N N N N -13.111 8.135 10.571 -3.447 1.337 0.566 C11 A1MIQ 2 A1MIQ C12 C3 C 0 1 Y N N N N N -11.835 7.624 10.752 -4.177 2.436 1.075 C12 A1MIQ 3 A1MIQ C13 C4 C 0 1 Y N N N N N -10.875 7.974 9.875 -5.469 2.643 0.699 C13 A1MIQ 4 A1MIQ C14 C5 C 0 1 N N N N N N -9.399 7.455 10.019 -6.228 3.821 1.253 C14 A1MIQ 5 A1MIQ C15 C6 C 0 1 Y N N N N N -11.164 8.859 8.768 -6.093 1.780 -0.192 C15 A1MIQ 6 A1MIQ C16 C7 C 0 1 Y N N N N N -12.464 9.374 8.588 -5.406 0.699 -0.705 C16 A1MIQ 7 A1MIQ C02 C8 C 0 1 N N S N N N -20.797 6.569 10.423 5.070 0.060 -1.222 C02 A1MIQ 8 A1MIQ C03 C9 C 0 1 N N R N N N -21.036 7.357 11.569 3.861 -0.904 -1.151 C03 A1MIQ 9 A1MIQ C05 C10 C 0 1 N N R N N N -19.961 6.804 12.582 3.309 -0.628 0.270 C05 A1MIQ 10 A1MIQ C07 C11 C 0 1 Y N N N N N -17.553 7.220 11.621 0.857 -0.093 0.176 C07 A1MIQ 11 A1MIQ C08 C12 C 0 1 Y N N N N N -16.635 8.216 11.877 -0.327 -0.744 0.308 C08 A1MIQ 12 A1MIQ C09 C13 C 0 1 Y N N N N N -15.248 8.334 11.193 -1.678 -0.156 0.194 C09 A1MIQ 13 A1MIQ C18 C14 C 0 1 N N N N N N -12.238 11.649 7.571 -7.378 0.151 -1.916 C18 A1MIQ 14 A1MIQ C19 C15 C 0 1 Y N N N N N -13.439 8.971 9.564 -4.075 0.468 -0.330 C19 A1MIQ 15 A1MIQ C21 C16 C 0 1 Y N N N N N -18.551 8.653 13.196 1.402 -2.231 0.598 C21 A1MIQ 16 A1MIQ C22 C17 C 0 1 Y N N N N N -17.216 9.138 12.845 -0.001 -2.150 0.585 C22 A1MIQ 17 A1MIQ C23 C18 C 0 1 Y N N N N N -16.703 10.279 13.416 -0.746 -3.313 0.817 C23 A1MIQ 18 A1MIQ C26 C19 C 0 1 Y N N N N N -18.822 10.391 14.602 1.231 -4.482 1.044 C26 A1MIQ 19 A1MIQ C29 C20 C 0 1 N N R N N N -20.305 5.085 11.067 4.775 1.117 -0.140 C29 A1MIQ 20 A1MIQ C30 C21 C 0 1 N N N N N N -19.313 4.413 10.008 4.723 2.509 -0.773 C30 A1MIQ 21 A1MIQ N06 N1 N 0 1 Y N N N N N -18.769 7.570 12.522 1.888 -0.975 0.348 N06 A1MIQ 22 A1MIQ N24 N2 N 0 1 N N N N N N -15.489 10.753 13.107 -2.129 -3.283 0.814 N24 A1MIQ 23 A1MIQ N25 N3 N 0 1 Y N N N N N -17.449 10.898 14.253 -0.090 -4.449 1.041 N25 A1MIQ 24 A1MIQ N27 N4 N 0 1 Y N N N N N -19.283 9.378 14.107 1.969 -3.414 0.831 N27 A1MIQ 25 A1MIQ N31 N5 N 0 1 N N N N N N -18.504 3.492 10.648 4.561 3.517 0.278 N31 A1MIQ 26 A1MIQ N32 N6 N 1 1 N N N N N N -17.564 2.822 9.958 5.338 4.318 0.413 N32 A1MIQ 27 A1MIQ N33 N7 N -1 1 N N N N N N -16.855 2.316 9.435 6.115 5.118 0.548 N33 A1MIQ 28 A1MIQ O01 O1 O 0 1 N N N N N N -21.953 6.442 9.603 6.283 -0.636 -0.924 O01 A1MIQ 29 A1MIQ O04 O2 O 0 1 N N N N N N -22.245 7.190 12.054 4.284 -2.263 -1.280 O04 A1MIQ 30 A1MIQ O17 O3 O 0 1 N N N N N N -12.791 10.266 7.487 -6.021 -0.144 -1.576 O17 A1MIQ 31 A1MIQ O28 O4 O 0 1 N N N N N N -19.588 5.416 12.159 3.498 0.794 0.435 O28 A1MIQ 32 A1MIQ S20 S1 S 0 1 Y N N N N N -15.008 9.330 9.712 -2.962 -0.810 -0.803 S20 A1MIQ 33 A1MIQ H101 H1 H 0 0 N N N N N N -14.179 7.112 12.397 -1.432 1.496 1.503 H101 A1MIQ 34 A1MIQ H121 H2 H 0 0 N N N N N N -11.616 6.961 11.576 -3.706 3.117 1.768 H121 A1MIQ 35 A1MIQ H143 H3 H 0 0 N N N N N N -9.285 6.513 9.463 -6.089 4.683 0.601 H143 A1MIQ 36 A1MIQ H142 H4 H 0 0 N N N N N N -8.705 8.206 9.613 -7.288 3.575 1.310 H142 A1MIQ 37 A1MIQ H141 H5 H 0 0 N N N N N N -9.173 7.283 11.082 -5.856 4.056 2.250 H141 A1MIQ 38 A1MIQ H151 H6 H 0 0 N N N N N N -10.380 9.127 8.076 -7.118 1.955 -0.483 H151 A1MIQ 39 A1MIQ H021 H7 H 0 0 N N N N N N -19.952 6.969 9.843 5.131 0.527 -2.205 H021 A1MIQ 40 A1MIQ H031 H8 H 0 0 N N N N N N -20.810 8.414 11.367 3.120 -0.655 -1.911 H031 A1MIQ 41 A1MIQ H051 H9 H 0 0 N N N N N N -20.387 6.795 13.596 3.879 -1.180 1.018 H051 A1MIQ 42 A1MIQ H071 H10 H 0 0 N N N N N N -17.450 6.384 10.945 0.969 0.960 -0.037 H071 A1MIQ 43 A1MIQ H181 H11 H 0 0 N N N N N N -12.552 12.224 6.687 -7.431 1.137 -2.375 H181 A1MIQ 44 A1MIQ H183 H12 H 0 0 N N N N N N -12.615 12.140 8.480 -7.748 -0.598 -2.617 H183 A1MIQ 45 A1MIQ H182 H13 H 0 0 N N N N N N -11.140 11.603 7.607 -7.989 0.137 -1.013 H182 A1MIQ 46 A1MIQ H261 H14 H 0 0 N N N N N N -19.418 10.943 15.314 1.725 -5.424 1.230 H261 A1MIQ 47 A1MIQ H291 H15 H 0 0 N N N N N N -21.181 4.446 11.253 5.547 1.085 0.629 H291 A1MIQ 48 A1MIQ H302 H16 H 0 0 N N N N N N -19.900 3.905 9.228 5.650 2.696 -1.316 H302 A1MIQ 49 A1MIQ H301 H17 H 0 0 N N N N N N -18.687 5.192 9.547 3.881 2.563 -1.462 H301 A1MIQ 50 A1MIQ H241 H18 H 0 0 N N N N N N -15.320 11.597 13.617 -2.595 -2.448 0.650 H241 A1MIQ 51 A1MIQ H242 H19 H 0 0 N N N N N N -14.795 10.074 13.347 -2.632 -4.095 0.976 H242 A1MIQ 52 A1MIQ H011 H21 H 0 0 N N N N N N -21.748 5.906 8.846 7.065 -0.068 -0.897 H011 A1MIQ 53 A1MIQ H041 H22 H 0 0 N N N N N N -22.358 7.739 12.821 4.718 -2.462 -2.121 H041 A1MIQ 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MIQ C02 O01 SING N N 1 A1MIQ C03 C02 SING N N 2 A1MIQ O04 C03 SING N N 3 A1MIQ C05 C03 SING N N 4 A1MIQ C08 C07 DOUB Y N 5 A1MIQ C09 C08 SING N N 6 A1MIQ C10 C09 DOUB Y N 7 A1MIQ C11 C10 SING Y N 8 A1MIQ C13 C12 DOUB Y N 9 A1MIQ C14 C13 SING N N 10 A1MIQ C15 C13 SING Y N 11 A1MIQ C16 C15 DOUB Y N 12 A1MIQ O17 C16 SING N N 13 A1MIQ C18 O17 SING N N 14 A1MIQ C12 C11 SING Y N 15 A1MIQ C19 C11 DOUB Y N 16 A1MIQ S20 C19 SING Y N 17 A1MIQ C07 N06 SING Y N 18 A1MIQ C21 N06 SING Y N 19 A1MIQ C22 C21 DOUB Y N 20 A1MIQ C23 C22 SING Y N 21 A1MIQ N24 C23 SING N N 22 A1MIQ N25 C23 DOUB Y N 23 A1MIQ C26 N25 SING Y N 24 A1MIQ N27 C26 DOUB Y N 25 A1MIQ N06 C05 SING N N 26 A1MIQ O28 C05 SING N N 27 A1MIQ C29 O28 SING N N 28 A1MIQ C30 C29 SING N N 29 A1MIQ N31 C30 SING N N 30 A1MIQ N32 N31 DOUB N N 31 A1MIQ N33 N32 DOUB N N 32 A1MIQ C02 C29 SING N N 33 A1MIQ C08 C22 SING Y N 34 A1MIQ C09 S20 SING Y N 35 A1MIQ C16 C19 SING Y N 36 A1MIQ C21 N27 SING Y N 37 A1MIQ C10 H101 SING N N 38 A1MIQ C12 H121 SING N N 39 A1MIQ C14 H143 SING N N 40 A1MIQ C14 H142 SING N N 41 A1MIQ C14 H141 SING N N 42 A1MIQ C15 H151 SING N N 43 A1MIQ C02 H021 SING N N 44 A1MIQ C03 H031 SING N N 45 A1MIQ C05 H051 SING N N 46 A1MIQ C07 H071 SING N N 47 A1MIQ C18 H181 SING N N 48 A1MIQ C18 H183 SING N N 49 A1MIQ C18 H182 SING N N 50 A1MIQ C26 H261 SING N N 51 A1MIQ C29 H291 SING N N 52 A1MIQ C30 H302 SING N N 53 A1MIQ C30 H301 SING N N 54 A1MIQ N24 H241 SING N N 55 A1MIQ N24 H242 SING N N 56 A1MIQ O01 H011 SING N N 57 A1MIQ O04 H041 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MIQ InChI InChI 1.06 "InChI=1S/C21H21N7O4S/c1-9-3-10-5-14(33-18(10)12(4-9)31-2)11-7-28(20-15(11)19(22)24-8-25-20)21-17(30)16(29)13(32-21)6-26-27-23/h3-5,7-8,13,16-17,21,29-30H,6H2,1-2H3,(H2,22,24,25)/t13-,16-,17-,21-/m1/s1" A1MIQ InChIKey InChI 1.06 DIFCCTTYDLQYMJ-TXRZWFJJSA-N A1MIQ SMILES_CANONICAL CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([C@@H]4O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]4O)c5ncnc(N)c35" A1MIQ SMILES CACTVS 3.385 "COc1cc(C)cc2cc(sc12)c3cn([CH]4O[CH](CN=[N+]=[N-])[CH](O)[CH]4O)c5ncnc(N)c35" A1MIQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CN=[N+]=[N-])O)O" A1MIQ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(sc2c(c1)OC)c3cn(c4c3c(ncn4)N)C5C(C(C(O5)CN=[N+]=[N-])O)O" # _pdbx_chem_comp_identifier.comp_id A1MIQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-[4-azanyl-5-(7-methoxy-5-methyl-1-benzothiophen-2-yl)pyrrolo[2,3-d]pyrimidin-7-yl]-5-(azidomethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MIQ "Create component" 2026-07-24 PDBJ A1MIQ "Initial release" 2026-10-14 RCSB #