data_A1MIS # _chem_comp.id A1MIS _chem_comp.name "2-[5-[2-(3,5-dimethoxyphenyl)ethyl]-1~{H}-pyrazol-3-yl]-6-(4-methylpiperazin-1-yl)-1~{H}-benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-07-24 _chem_comp.pdbx_modified_date 2026-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.545 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1MIS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 44AD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1MIS C11 C1 C 0 1 Y N N N N N -21.594 9.086 14.688 3.012 0.731 -0.479 C11 A1MIS 1 A1MIS C13 C2 C 0 1 Y N N N N N -19.748 10.169 14.443 1.321 -0.645 -0.509 C13 A1MIS 2 A1MIS C14 C3 C 0 1 Y N N N N N -18.337 10.520 14.026 -0.065 -1.155 -0.565 C14 A1MIS 3 A1MIS C17 C4 C 0 1 Y N N N N N -16.353 10.485 13.087 -2.292 -1.211 -0.696 C17 A1MIS 4 A1MIS C18 C5 C 0 1 N N N N N N -15.101 10.152 12.286 -3.740 -0.806 -0.800 C18 A1MIS 5 A1MIS C19 C6 C 0 1 N N N N N N -15.228 9.006 11.293 -4.279 -0.477 0.594 C19 A1MIS 6 A1MIS C20 C7 C 0 1 Y N N N N N -13.922 9.113 10.512 -5.727 -0.072 0.490 C20 A1MIS 7 A1MIS C21 C8 C 0 1 Y N N N N N -13.921 9.960 9.429 -6.060 1.254 0.295 C21 A1MIS 8 A1MIS C22 C9 C 0 1 Y N N N N N -12.769 10.108 8.705 -7.393 1.630 0.199 C22 A1MIS 9 A1MIS C24 C10 C 0 1 N N N N N N -11.738 11.816 7.504 -9.111 3.249 -0.083 C24 A1MIS 10 A1MIS C25 C11 C 0 1 Y N N N N N -11.602 9.436 9.082 -8.390 0.672 0.298 C25 A1MIS 11 A1MIS C26 C12 C 0 1 Y N N N N N -11.600 8.599 10.188 -8.054 -0.659 0.494 C26 A1MIS 12 A1MIS C32 C13 C 0 1 Y N N N N N -22.634 8.127 14.690 3.886 1.824 -0.489 C32 A1MIS 13 A1MIS C33 C14 C 0 1 Y N N N N N -23.826 8.449 15.302 5.233 1.620 -0.403 C33 A1MIS 14 A1MIS C01 C15 C 0 1 N N N N N N -28.450 11.161 17.371 11.158 0.205 1.062 C01 A1MIS 15 A1MIS C03 C16 C 0 1 N N N N N N -26.466 12.086 17.170 9.354 1.172 -0.232 C03 A1MIS 16 A1MIS C04 C17 C 0 1 N N N N N N -25.513 10.955 17.569 7.844 1.426 -0.249 C04 A1MIS 17 A1MIS C05 C18 C 0 1 N N N N N N -27.414 10.830 15.485 8.995 -0.881 0.999 C05 A1MIS 18 A1MIS C06 C19 C 0 1 N N N N N N -26.518 9.635 15.828 7.485 -0.627 0.983 C06 A1MIS 19 A1MIS C08 C20 C 0 1 Y N N N N N -23.995 9.693 15.910 5.751 0.330 -0.306 C08 A1MIS 20 A1MIS C09 C21 C 0 1 Y N N N N N -22.974 10.641 15.908 4.903 -0.765 -0.296 C09 A1MIS 21 A1MIS C10 C22 C 0 1 Y N N N N N -21.747 10.305 15.280 3.531 -0.572 -0.382 C10 A1MIS 22 A1MIS C28 C23 C 0 1 N N N N N N -9.563 7.431 9.634 -10.380 -1.147 0.485 C28 A1MIS 23 A1MIS C29 C24 C 0 1 Y N N N N N -12.775 8.460 10.914 -6.719 -1.030 0.584 C29 A1MIS 24 A1MIS C30 C25 C 0 1 Y N N N N N -17.520 9.773 13.185 -1.234 -0.373 -0.675 C30 A1MIS 25 A1MIS N02 N1 N 0 1 N N N N N N -27.620 11.674 16.543 9.706 0.405 0.971 N02 A1MIS 26 A1MIS N07 N2 N 0 1 N N N N N N -25.284 9.982 16.514 7.133 0.140 -0.220 N07 A1MIS 27 A1MIS N12 N3 N 0 1 Y N N N N N -20.341 9.016 14.175 1.662 0.619 -0.554 N12 A1MIS 28 A1MIS N15 N4 N 0 1 Y N N N N N -17.710 11.633 14.388 -0.429 -2.421 -0.527 N15 A1MIS 29 A1MIS N16 N5 N 0 1 Y N N N N N -16.473 11.573 13.793 -1.826 -2.475 -0.606 N16 A1MIS 30 A1MIS N31 N6 N 0 1 Y N N N N N -20.573 10.965 15.111 2.443 -1.423 -0.397 N31 A1MIS 31 A1MIS O23 O1 O 0 1 N N N N N N -12.831 10.952 7.604 -7.719 2.935 0.007 O23 A1MIS 32 A1MIS O27 O2 O 0 1 N N N N N N -10.443 7.922 10.601 -9.029 -1.599 0.592 O27 A1MIS 33 A1MIS H182 H1 H 0 0 N N N N N N -14.305 9.892 12.999 -3.827 0.073 -1.439 H182 A1MIS 34 A1MIS H181 H2 H 0 0 N N N N N N -14.811 11.053 11.725 -4.317 -1.625 -1.228 H181 A1MIS 35 A1MIS H191 H3 H 0 0 N N N N N N -15.306 8.038 11.809 -4.193 -1.356 1.234 H191 A1MIS 36 A1MIS H192 H4 H 0 0 N N N N N N -16.099 9.143 10.635 -3.703 0.343 1.023 H192 A1MIS 37 A1MIS H211 H5 H 0 0 N N N N N N -14.815 10.500 9.154 -5.283 2.000 0.218 H211 A1MIS 38 A1MIS H242 H6 H 0 0 N N N N N N -11.853 12.452 6.614 -9.232 4.321 -0.235 H242 A1MIS 39 A1MIS H243 H7 H 0 0 N N N N N N -11.687 12.449 8.402 -9.551 2.710 -0.922 H243 A1MIS 40 A1MIS H241 H8 H 0 0 N N N N N N -10.813 11.228 7.417 -9.610 2.954 0.840 H241 A1MIS 41 A1MIS H251 H9 H 0 0 N N N N N N -10.697 9.570 8.508 -9.428 0.962 0.223 H251 A1MIS 42 A1MIS H321 H10 H 0 0 N N N N N N -22.497 7.163 14.222 3.494 2.828 -0.564 H321 A1MIS 43 A1MIS H331 H11 H 0 0 N N N N N N -24.635 7.733 15.311 5.903 2.467 -0.411 H331 A1MIS 44 A1MIS H013 H12 H 0 0 N N N N N N -29.356 10.845 16.834 11.656 1.174 1.106 H013 A1MIS 45 A1MIS H011 H13 H 0 0 N N N N N N -27.990 10.289 17.858 11.391 -0.365 1.961 H011 A1MIS 46 A1MIS H012 H14 H 0 0 N N N N N N -28.717 11.908 18.133 11.505 -0.342 0.185 H012 A1MIS 47 A1MIS H031 H15 H 0 0 N N N N N N -26.748 12.633 18.082 9.637 0.606 -1.120 H031 A1MIS 48 A1MIS H032 H16 H 0 0 N N N N N N -25.929 12.762 16.488 9.883 2.124 -0.224 H032 A1MIS 49 A1MIS H042 H17 H 0 0 N N N N N N -24.546 11.399 17.848 7.565 2.015 0.625 H042 A1MIS 50 A1MIS H041 H18 H 0 0 N N N N N N -25.940 10.431 18.437 7.577 1.969 -1.155 H041 A1MIS 51 A1MIS H052 H19 H 0 0 N N N N N N -28.389 10.449 15.147 9.262 -1.424 1.906 H052 A1MIS 52 A1MIS H051 H20 H 0 0 N N N N N N -26.941 11.399 14.671 9.274 -1.470 0.126 H051 A1MIS 53 A1MIS H062 H21 H 0 0 N N N N N N -27.089 8.952 16.474 6.956 -1.579 0.975 H062 A1MIS 54 A1MIS H061 H22 H 0 0 N N N N N N -26.257 9.121 14.891 7.202 -0.061 1.871 H061 A1MIS 55 A1MIS H091 H23 H 0 0 N N N N N N -23.113 11.606 16.372 5.306 -1.764 -0.222 H091 A1MIS 56 A1MIS H282 H24 H 0 0 N N N N N N -8.716 6.932 10.128 -10.586 -0.427 1.277 H282 A1MIS 57 A1MIS H281 H25 H 0 0 N N N N N N -10.090 6.710 8.992 -10.528 -0.672 -0.485 H281 A1MIS 58 A1MIS H283 H26 H 0 0 N N N N N N -9.190 8.265 9.021 -11.057 -1.996 0.580 H283 A1MIS 59 A1MIS H291 H27 H 0 0 N N N N N N -12.791 7.838 11.797 -6.456 -2.066 0.733 H291 A1MIS 60 A1MIS H301 H28 H 0 0 N N N N N N -17.755 8.832 12.710 -1.275 0.705 -0.733 H301 A1MIS 61 A1MIS H161 H31 H 0 0 N N N N N N -15.762 12.270 13.889 -2.366 -3.281 -0.597 H161 A1MIS 62 A1MIS H311 H32 H 0 0 N N N N N N -20.366 11.889 15.433 2.469 -2.391 -0.344 H311 A1MIS 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1MIS N02 C01 SING N N 1 A1MIS C04 C03 SING N N 2 A1MIS C03 N02 SING N N 3 A1MIS C05 N02 SING N N 4 A1MIS C06 C05 SING N N 5 A1MIS N07 C06 SING N N 6 A1MIS C08 N07 SING N N 7 A1MIS C09 C08 DOUB Y N 8 A1MIS C10 C09 SING Y N 9 A1MIS C11 C10 DOUB Y N 10 A1MIS C13 N12 DOUB Y N 11 A1MIS N15 C14 DOUB Y N 12 A1MIS N16 N15 SING Y N 13 A1MIS C17 N16 SING Y N 14 A1MIS C19 C18 SING N N 15 A1MIS C20 C19 SING N N 16 A1MIS C21 C20 DOUB Y N 17 A1MIS C22 C21 SING Y N 18 A1MIS C24 O23 SING N N 19 A1MIS O23 C22 SING N N 20 A1MIS C25 C22 DOUB Y N 21 A1MIS C26 C25 SING Y N 22 A1MIS C28 O27 SING N N 23 A1MIS O27 C26 SING N N 24 A1MIS C29 C26 DOUB Y N 25 A1MIS C18 C17 SING N N 26 A1MIS C30 C17 DOUB Y N 27 A1MIS C14 C13 SING N N 28 A1MIS N31 C13 SING Y N 29 A1MIS N12 C11 SING Y N 30 A1MIS C32 C11 SING Y N 31 A1MIS C33 C32 DOUB Y N 32 A1MIS C04 N07 SING N N 33 A1MIS C08 C33 SING Y N 34 A1MIS C10 N31 SING Y N 35 A1MIS C14 C30 SING Y N 36 A1MIS C20 C29 SING Y N 37 A1MIS C18 H182 SING N N 38 A1MIS C18 H181 SING N N 39 A1MIS C19 H191 SING N N 40 A1MIS C19 H192 SING N N 41 A1MIS C21 H211 SING N N 42 A1MIS C24 H242 SING N N 43 A1MIS C24 H243 SING N N 44 A1MIS C24 H241 SING N N 45 A1MIS C25 H251 SING N N 46 A1MIS C32 H321 SING N N 47 A1MIS C33 H331 SING N N 48 A1MIS C01 H013 SING N N 49 A1MIS C01 H011 SING N N 50 A1MIS C01 H012 SING N N 51 A1MIS C03 H031 SING N N 52 A1MIS C03 H032 SING N N 53 A1MIS C04 H042 SING N N 54 A1MIS C04 H041 SING N N 55 A1MIS C05 H052 SING N N 56 A1MIS C05 H051 SING N N 57 A1MIS C06 H062 SING N N 58 A1MIS C06 H061 SING N N 59 A1MIS C09 H091 SING N N 60 A1MIS C28 H282 SING N N 61 A1MIS C28 H281 SING N N 62 A1MIS C28 H283 SING N N 63 A1MIS C29 H291 SING N N 64 A1MIS C30 H301 SING N N 65 A1MIS N16 H161 SING N N 66 A1MIS N31 H311 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1MIS InChI InChI 1.06 "InChI=1S/C25H30N6O2/c1-30-8-10-31(11-9-30)19-6-7-22-23(15-19)27-25(26-22)24-14-18(28-29-24)5-4-17-12-20(32-2)16-21(13-17)33-3/h6-7,12-16H,4-5,8-11H2,1-3H3,(H,26,27)(H,28,29)" A1MIS InChIKey InChI 1.06 QHCGPJPIPKDWAT-UHFFFAOYSA-N A1MIS SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCc2[nH]nc(c2)c3[nH]c4cc(ccc4n3)N5CCN(C)CC5)cc(OC)c1" A1MIS SMILES CACTVS 3.385 "COc1cc(CCc2[nH]nc(c2)c3[nH]c4cc(ccc4n3)N5CCN(C)CC5)cc(OC)c1" A1MIS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4cc([nH]n4)CCc5cc(cc(c5)OC)OC" A1MIS SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4cc([nH]n4)CCc5cc(cc(c5)OC)OC" # _pdbx_chem_comp_identifier.comp_id A1MIS _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[5-[2-(3,5-dimethoxyphenyl)ethyl]-1~{H}-pyrazol-3-yl]-6-(4-methylpiperazin-1-yl)-1~{H}-benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1MIS "Create component" 2026-07-24 PDBJ A1MIS "Initial release" 2026-10-14 RCSB #