data_A1PP5 # _chem_comp.id A1PP5 _chem_comp.name "4-[(4S)-6-oxa-1-azaspiro[3.4]octan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.266 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PP5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15PU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PP5 C11 C1 C 0 1 Y N N N N N -48.584 -28.679 5.647 2.726 -2.021 -0.666 C11 A1PP5 1 A1PP5 C12 C2 C 0 1 Y N N N N N -46.482 -29.185 6.321 2.545 -0.009 0.310 C12 A1PP5 2 A1PP5 C1 C3 C 0 1 Y N N N N N -44.325 -29.706 6.401 1.704 2.036 0.946 C1 A1PP5 3 A1PP5 C10 C4 C 0 1 Y N N N N N -47.849 -28.863 4.501 1.532 -1.547 -1.058 C10 A1PP5 4 A1PP5 C2 C5 C 0 1 Y N N N N N -45.262 -29.505 4.252 0.382 0.759 -0.449 C2 A1PP5 5 A1PP5 C3 C6 C 0 1 N N N N N N -46.173 -29.248 1.923 -1.576 1.834 -1.205 C3 A1PP5 6 A1PP5 C4 C7 C 0 1 N N N N N N -45.413 -30.102 0.917 -2.834 0.986 -0.960 C4 A1PP5 7 A1PP5 C5 C8 C 0 1 N N S N N N -44.723 -30.780 2.105 -1.839 0.017 -0.336 C5 A1PP5 8 A1PP5 C6 C9 C 0 1 N N N N N N -43.230 -31.022 2.059 -2.133 -1.477 -0.538 C6 A1PP5 9 A1PP5 C7 C10 C 0 1 N N N N N N -43.015 -32.384 2.717 -2.577 -1.958 0.860 C7 A1PP5 10 A1PP5 C8 C11 C 0 1 N N N N N N -45.295 -32.095 2.632 -1.640 0.142 1.184 C8 A1PP5 11 A1PP5 C9 C12 C 0 1 Y N N N N N -46.501 -29.194 4.897 1.376 -0.232 -0.441 C9 A1PP5 12 A1PP5 N1 N1 N 0 1 Y N N N N N -44.201 -29.751 5.074 0.591 1.868 0.255 N1 A1PP5 13 A1PP5 N2 N2 N 0 1 N N N N N N -45.073 -29.547 2.830 -0.784 0.587 -1.172 N2 A1PP5 14 A1PP5 N3 N3 N 0 1 Y N N N N N -47.757 -28.867 6.737 3.342 -1.110 0.153 N3 A1PP5 15 A1PP5 N4 N4 N 0 1 Y N N N N N -45.413 -29.437 7.116 2.661 1.135 0.983 N4 A1PP5 16 A1PP5 O1 O1 O 0 1 N N N N N N -44.236 -32.657 3.392 -2.587 -0.808 1.724 O1 A1PP5 17 A1PP5 H13 H1 H 0 1 N N N N N N -49.634 -28.429 5.689 3.138 -2.978 -0.950 H13 A1PP5 18 A1PP5 H1 H2 H 0 1 N N N N N N -43.429 -29.914 6.966 1.832 2.952 1.504 H1 A1PP5 19 A1PP5 H12 H3 H 0 1 N N N N N N -48.213 -28.776 3.488 0.824 -2.043 -1.706 H12 A1PP5 20 A1PP5 H2 H4 H 0 1 N N N N N N -46.278 -28.188 1.650 -1.568 2.326 -2.178 H2 A1PP5 21 A1PP5 H3 H5 H 0 1 N N N N N N -47.152 -29.647 2.229 -1.345 2.515 -0.386 H3 A1PP5 22 A1PP5 H4 H6 H 0 1 N N N N N N -46.045 -30.769 0.313 -3.537 1.423 -0.251 H4 A1PP5 23 A1PP5 H5 H7 H 0 1 N N N N N N -44.738 -29.539 0.256 -3.309 0.616 -1.869 H5 A1PP5 24 A1PP5 H6 H8 H 0 1 N N N N N N -42.875 -31.038 1.018 -2.936 -1.615 -1.262 H6 A1PP5 25 A1PP5 H7 H9 H 0 1 N N N N N N -42.696 -30.238 2.616 -1.235 -2.005 -0.857 H7 A1PP5 26 A1PP5 H9 H10 H 0 1 N N N N N N -42.811 -33.153 1.958 -3.576 -2.389 0.804 H9 A1PP5 27 A1PP5 H8 H11 H 0 1 N N N N N N -42.179 -32.342 3.430 -1.872 -2.699 1.238 H8 A1PP5 28 A1PP5 H11 H12 H 0 1 N N N N N N -46.175 -31.911 3.266 -0.622 -0.131 1.462 H11 A1PP5 29 A1PP5 H10 H13 H 0 1 N N N N N N -45.574 -32.760 1.801 -1.874 1.152 1.520 H10 A1PP5 30 A1PP5 H14 H14 H 0 1 N N N N N N -48.042 -28.784 7.692 4.212 -1.230 0.564 H14 A1PP5 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PP5 C4 C3 SING N N 1 A1PP5 C4 C5 SING N N 2 A1PP5 C3 N2 SING N N 3 A1PP5 C6 C5 SING N N 4 A1PP5 C6 C7 SING N N 5 A1PP5 C5 C8 SING N N 6 A1PP5 C5 N2 SING N N 7 A1PP5 C8 O1 SING N N 8 A1PP5 C7 O1 SING N N 9 A1PP5 N2 C2 SING N N 10 A1PP5 C2 C9 DOUB Y N 11 A1PP5 C2 N1 SING Y N 12 A1PP5 C10 C9 SING Y N 13 A1PP5 C10 C11 DOUB Y N 14 A1PP5 C9 C12 SING Y N 15 A1PP5 N1 C1 DOUB Y N 16 A1PP5 C11 N3 SING Y N 17 A1PP5 C12 N3 SING Y N 18 A1PP5 C12 N4 DOUB Y N 19 A1PP5 C1 N4 SING Y N 20 A1PP5 C11 H13 SING N N 21 A1PP5 C1 H1 SING N N 22 A1PP5 C10 H12 SING N N 23 A1PP5 C3 H2 SING N N 24 A1PP5 C3 H3 SING N N 25 A1PP5 C4 H4 SING N N 26 A1PP5 C4 H5 SING N N 27 A1PP5 C6 H6 SING N N 28 A1PP5 C6 H7 SING N N 29 A1PP5 C7 H9 SING N N 30 A1PP5 C7 H8 SING N N 31 A1PP5 C8 H11 SING N N 32 A1PP5 C8 H10 SING N N 33 A1PP5 N3 H14 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PP5 SMILES ACDLabs 14.52 "C1COCC11CCN1c1ncnc2[NH]ccc12" A1PP5 InChI InChI 1.06 "InChI=1S/C12H14N4O/c1-4-13-10-9(1)11(15-8-14-10)16-5-2-12(16)3-6-17-7-12/h1,4,8H,2-3,5-7H2,(H,13,14,15)/t12-/m0/s1" A1PP5 InChIKey InChI 1.06 XIIRICUNTYFVJI-LBPRGKRZSA-N A1PP5 SMILES_CANONICAL CACTVS 3.385 "C1C[C@@]2(CCN2c3ncnc4[nH]ccc34)CO1" A1PP5 SMILES CACTVS 3.385 "C1C[C]2(CCN2c3ncnc4[nH]ccc34)CO1" A1PP5 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@@]34CCOC4" A1PP5 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC34CCOC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PP5 "SYSTEMATIC NAME" ACDLabs 14.52 "4-[(4S)-6-oxa-1-azaspiro[3.4]octan-1-yl]-7H-pyrrolo[2,3-d]pyrimidine" A1PP5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(4~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-7-oxa-1-azaspiro[3.4]octane" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PP5 "Create component" 2026-09-04 RCSB A1PP5 "Initial release" 2026-11-04 RCSB #