data_A1PP8 # _chem_comp.id A1PP8 _chem_comp.name "(3R)-3-hydroxy-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-1lambda~6~-thiolane-1,1-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.319 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PP8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15QI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PP8 C11 C1 C 0 1 N N N N N N -44.763 -31.275 1.330 2.862 -0.999 0.515 C11 A1PP8 1 A1PP8 C1 C2 C 0 1 N N N N N N -42.188 -31.687 0.493 3.247 1.457 -0.644 C1 A1PP8 2 A1PP8 C10 C3 C 0 1 Y N N N N N -46.955 -28.859 4.723 -3.160 0.413 -0.030 C10 A1PP8 3 A1PP8 C2 C4 C 0 1 N N N N N N -42.595 -30.238 0.746 1.791 0.923 -0.678 C2 A1PP8 4 A1PP8 C3 C5 C 0 1 N N R N N N -43.731 -30.238 1.789 1.651 -0.046 0.509 C3 A1PP8 5 A1PP8 C4 C6 C 0 1 N N N N N N -44.373 -28.850 1.961 0.360 -0.855 0.362 C4 A1PP8 6 A1PP8 C5 C7 C 0 1 Y N N N N N -45.747 -29.024 4.009 -2.057 -0.446 0.091 C5 A1PP8 7 A1PP8 C6 C8 C 0 1 Y N N N N N -44.662 -29.417 6.024 -3.494 -2.244 -0.075 C6 A1PP8 8 A1PP8 C7 C9 C 0 1 Y N N N N N -46.848 -29.010 6.126 -4.442 -0.149 -0.175 C7 A1PP8 9 A1PP8 C8 C10 C 0 1 Y N N N N N -48.998 -28.565 5.615 -4.664 2.083 -0.185 C8 A1PP8 10 A1PP8 C9 C11 C 0 1 Y N N N N N -48.327 -28.567 4.418 -3.347 1.863 -0.041 C9 A1PP8 11 A1PP8 N1 N1 N 0 1 N N N N N N -45.663 -28.914 2.625 -0.778 0.059 0.236 N1 A1PP8 12 A1PP8 N2 N2 N 0 1 Y N N N N N -44.619 -29.298 4.699 -2.274 -1.758 0.064 N2 A1PP8 13 A1PP8 N3 N3 N 0 1 Y N N N N N -45.720 -29.294 6.823 -4.556 -1.477 -0.192 N3 A1PP8 14 A1PP8 N4 N4 N 0 1 Y N N N N N -48.108 -28.818 6.640 -5.329 0.887 -0.271 N4 A1PP8 15 A1PP8 O1 O1 O 0 1 N N N N N N -43.592 -33.641 1.747 5.207 0.252 0.703 O1 A1PP8 16 A1PP8 O2 O2 O 0 1 N N N N N N -44.173 -33.042 -0.642 4.590 -0.686 -1.486 O2 A1PP8 17 A1PP8 O3 O3 O 0 1 N N N N N N -43.200 -30.682 3.032 1.614 0.693 1.732 O3 A1PP8 18 A1PP8 S1 S1 S 0 1 N N N N N N -43.733 -32.633 0.688 4.216 -0.053 -0.270 S1 A1PP8 19 A1PP8 H13 H1 H 0 1 N N N N N N -45.411 -30.864 0.541 3.130 -1.265 1.538 H13 A1PP8 20 A1PP8 H14 H2 H 0 1 N N N N N N -45.382 -31.615 2.173 2.641 -1.897 -0.063 H14 A1PP8 21 A1PP8 H1 H3 H 0 1 N N N N N N -41.436 -32.014 1.227 3.530 1.868 -1.613 H1 A1PP8 22 A1PP8 H2 H4 H 0 1 N N N N N N -41.784 -31.806 -0.523 3.368 2.200 0.144 H2 A1PP8 23 A1PP8 H4 H5 H 0 1 N N N N N N -41.735 -29.670 1.131 1.088 1.749 -0.570 H4 A1PP8 24 A1PP8 H3 H6 H 0 1 N N N N N N -42.947 -29.780 -0.190 1.608 0.396 -1.614 H3 A1PP8 25 A1PP8 H6 H7 H 0 1 N N N N N N -43.698 -28.221 2.560 0.424 -1.481 -0.528 H6 A1PP8 26 A1PP8 H7 H8 H 0 1 N N N N N N -44.509 -28.399 0.967 0.225 -1.486 1.241 H7 A1PP8 27 A1PP8 H9 H9 H 0 1 N N N N N N -43.724 -29.641 6.510 -3.626 -3.316 -0.093 H9 A1PP8 28 A1PP8 H11 H10 H 0 1 N N N N N N -50.057 -28.392 5.736 -5.129 3.057 -0.232 H11 A1PP8 29 A1PP8 H12 H11 H 0 1 N N N N N N -48.748 -28.385 3.440 -2.575 2.612 0.049 H12 A1PP8 30 A1PP8 H8 H12 H 0 1 N N N N N N -46.154 -28.080 2.375 -0.634 1.018 0.255 H8 A1PP8 31 A1PP8 H10 H13 H 0 1 N N N N N N -48.345 -28.856 7.611 -6.288 0.790 -0.379 H10 A1PP8 32 A1PP8 H5 H14 H 0 1 N N N N N N -43.888 -30.688 3.687 0.875 1.313 1.794 H5 A1PP8 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PP8 O2 S1 DOUB N N 1 A1PP8 C1 S1 SING N N 2 A1PP8 C1 C2 SING N N 3 A1PP8 S1 C11 SING N N 4 A1PP8 S1 O1 DOUB N N 5 A1PP8 C2 C3 SING N N 6 A1PP8 C11 C3 SING N N 7 A1PP8 C3 C4 SING N N 8 A1PP8 C3 O3 SING N N 9 A1PP8 C4 N1 SING N N 10 A1PP8 N1 C5 SING N N 11 A1PP8 C5 N2 DOUB Y N 12 A1PP8 C5 C10 SING Y N 13 A1PP8 C9 C10 SING Y N 14 A1PP8 C9 C8 DOUB Y N 15 A1PP8 N2 C6 SING Y N 16 A1PP8 C10 C7 DOUB Y N 17 A1PP8 C8 N4 SING Y N 18 A1PP8 C6 N3 DOUB Y N 19 A1PP8 C7 N4 SING Y N 20 A1PP8 C7 N3 SING Y N 21 A1PP8 C11 H13 SING N N 22 A1PP8 C11 H14 SING N N 23 A1PP8 C1 H1 SING N N 24 A1PP8 C1 H2 SING N N 25 A1PP8 C2 H4 SING N N 26 A1PP8 C2 H3 SING N N 27 A1PP8 C4 H6 SING N N 28 A1PP8 C4 H7 SING N N 29 A1PP8 C6 H9 SING N N 30 A1PP8 C8 H11 SING N N 31 A1PP8 C9 H12 SING N N 32 A1PP8 N1 H8 SING N N 33 A1PP8 N4 H10 SING N N 34 A1PP8 O3 H5 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PP8 SMILES ACDLabs 14.52 "OC1(CNc2ncnc3[NH]ccc32)CCS(=O)(=O)C1" A1PP8 InChI InChI 1.06 "InChI=1S/C11H14N4O3S/c16-11(2-4-19(17,18)6-11)5-13-10-8-1-3-12-9(8)14-7-15-10/h1,3,7,16H,2,4-6H2,(H2,12,13,14,15)/t11-/m1/s1" A1PP8 InChIKey InChI 1.06 FKIXCQNNTLOGKI-LLVKDONJSA-N A1PP8 SMILES_CANONICAL CACTVS 3.385 "O[C@]1(CC[S](=O)(=O)C1)CNc2ncnc3[nH]ccc23" A1PP8 SMILES CACTVS 3.385 "O[C]1(CC[S](=O)(=O)C1)CNc2ncnc3[nH]ccc23" A1PP8 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC[C@@]3(CCS(=O)(=O)C3)O" A1PP8 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NCC3(CCS(=O)(=O)C3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PP8 "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-hydroxy-3-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}-1lambda~6~-thiolane-1,1-dione" A1PP8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-1,1-bis(oxidanylidene)-3-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]thiolan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PP8 "Create component" 2026-09-04 RCSB A1PP8 "Initial release" 2026-11-04 RCSB #