data_A1PPY # _chem_comp.id A1PPY _chem_comp.name "2-[(2S)-1-{6-[(cyclopropylmethyl)amino]pyrimidin-4-yl}pyrrolidin-2-yl]propan-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.377 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PPY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15LW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PPY C13 C1 C 0 1 N N N N N N -50.213 -30.908 7.666 -5.872 1.062 1.262 C13 A1PPY 1 A1PPY C15 C2 C 0 1 Y N N N N N -44.434 -29.739 6.578 -0.115 -2.712 -0.198 C15 A1PPY 2 A1PPY C11 C3 C 0 1 N N N N N N -49.115 -28.850 6.459 -3.684 0.455 -0.036 C11 A1PPY 3 A1PPY C12 C4 C 0 1 N N N N N N -49.622 -30.279 6.425 -5.213 0.469 0.015 C12 A1PPY 4 A1PPY C1 C5 C 0 1 N N N N N N -42.855 -29.068 2.832 2.816 -0.092 2.260 C1 A1PPY 5 A1PPY C10 C6 C 0 1 Y N N N N N -46.664 -29.240 6.433 -1.849 -1.196 -0.120 C10 A1PPY 6 A1PPY C14 C7 C 0 1 N N N N N N -51.105 -30.574 6.497 -5.910 1.829 -0.062 C14 A1PPY 7 A1PPY C2 C8 C 0 1 N N N N N N -43.209 -30.262 1.928 3.532 0.399 0.999 C2 A1PPY 8 A1PPY C3 C9 C 0 1 N N N N N N -41.903 -30.929 1.456 4.939 -0.198 0.947 C3 A1PPY 9 A1PPY C4 C10 C 0 1 N N S N N N -44.205 -31.224 2.647 2.745 -0.041 -0.237 C4 A1PPY 10 A1PPY C5 C11 C 0 1 N N N N N N -44.712 -32.356 1.735 3.428 0.496 -1.512 C5 A1PPY 11 A1PPY C6 C12 C 0 1 N N N N N N -46.227 -32.405 1.901 2.227 0.885 -2.414 C6 A1PPY 12 A1PPY C7 C13 C 0 1 N N N N N N -46.612 -31.146 2.669 1.209 1.408 -1.371 C7 A1PPY 13 A1PPY C8 C14 C 0 1 Y N N N N N -45.445 -30.126 4.548 0.428 -0.473 -0.177 C8 A1PPY 14 A1PPY C9 C15 C 0 1 Y N N N N N -46.667 -29.657 5.085 -0.926 -0.154 -0.138 C9 A1PPY 15 A1PPY N1 N1 N 0 1 N N N N N N -45.388 -30.559 3.205 1.386 0.529 -0.196 N1 A1PPY 16 A1PPY N2 N2 N 0 1 N N N N N N -47.806 -28.763 7.084 -3.208 -0.930 -0.070 N2 A1PPY 17 A1PPY N3 N3 N 0 1 Y N N N N N -45.538 -29.286 7.172 -1.406 -2.451 -0.151 N3 A1PPY 18 A1PPY N4 N4 N 0 1 Y N N N N N -44.327 -30.160 5.315 0.789 -1.755 -0.211 N4 A1PPY 19 A1PPY O1 O1 O 0 1 N N N N N N -43.842 -29.725 0.780 3.619 1.825 1.026 O1 A1PPY 20 A1PPY H20 H1 H 0 1 N N N N N N -49.994 -31.959 7.907 -6.800 0.606 1.606 H20 A1PPY 21 A1PPY H21 H2 H 0 1 N N N N N N -50.285 -30.325 8.596 -5.217 1.443 2.045 H21 A1PPY 22 A1PPY H24 H3 H 0 1 N N N N N N -43.536 -29.769 7.178 0.211 -3.742 -0.222 H24 A1PPY 23 A1PPY H18 H4 H 0 1 N N N N N N -49.045 -28.471 5.429 -3.346 0.977 -0.932 H18 A1PPY 24 A1PPY H17 H5 H 0 1 N N N N N N -49.825 -28.233 7.029 -3.286 0.954 0.847 H17 A1PPY 25 A1PPY H19 H6 H 0 1 N N N N N N -49.042 -30.962 5.787 -5.707 -0.378 -0.461 H19 A1PPY 26 A1PPY H1 H7 H 0 1 N N N N N N -42.358 -29.432 3.743 2.750 -1.179 2.240 H1 A1PPY 27 A1PPY H3 H8 H 0 1 N N N N N N -42.179 -28.388 2.293 3.376 0.222 3.141 H3 A1PPY 28 A1PPY H2 H9 H 0 1 N N N N N N -43.775 -28.530 3.106 1.813 0.333 2.297 H2 A1PPY 29 A1PPY H23 H10 H 0 1 N N N N N N -51.827 -29.748 6.575 -6.863 1.876 -0.589 H23 A1PPY 30 A1PPY H22 H11 H 0 1 N N N N N N -51.536 -31.381 5.886 -5.280 2.714 -0.150 H22 A1PPY 31 A1PPY H5 H12 H 0 1 N N N N N N -41.378 -31.361 2.321 5.449 0.152 0.049 H5 A1PPY 32 A1PPY H6 H13 H 0 1 N N N N N N -42.138 -31.726 0.735 5.500 0.116 1.828 H6 A1PPY 33 A1PPY H4 H14 H 0 1 N N N N N N -41.260 -30.177 0.975 4.873 -1.286 0.927 H4 A1PPY 34 A1PPY H8 H15 H 0 1 N N N N N N -43.655 -31.695 3.475 2.690 -1.130 -0.273 H8 A1PPY 35 A1PPY H10 H16 H 0 1 N N N N N N -44.266 -33.315 2.037 4.038 1.370 -1.284 H10 A1PPY 36 A1PPY H9 H17 H 0 1 N N N N N N -44.452 -32.144 0.687 4.029 -0.281 -1.985 H9 A1PPY 37 A1PPY H12 H18 H 0 1 N N N N N N -46.718 -32.416 0.917 2.505 1.671 -3.117 H12 A1PPY 38 A1PPY H11 H19 H 0 1 N N N N N N -46.520 -33.301 2.467 1.835 0.014 -2.940 H11 A1PPY 39 A1PPY H14 H20 H 0 1 N N N N N N -47.105 -30.432 1.993 1.433 2.442 -1.108 H14 A1PPY 40 A1PPY H13 H21 H 0 1 N N N N N N -47.295 -31.404 3.492 0.193 1.326 -1.758 H13 A1PPY 41 A1PPY H15 H22 H 0 1 N N N N N N -47.566 -29.620 4.487 -1.252 0.875 -0.109 H15 A1PPY 42 A1PPY H16 H23 H 0 1 N N N N N N -47.870 -29.262 7.948 -3.845 -1.662 -0.058 H16 A1PPY 43 A1PPY H7 H24 H 0 1 N N N N N N -44.655 -29.304 1.034 4.106 2.175 1.784 H7 A1PPY 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PPY O1 C2 SING N N 1 A1PPY C3 C2 SING N N 2 A1PPY C5 C6 SING N N 3 A1PPY C5 C4 SING N N 4 A1PPY C6 C7 SING N N 5 A1PPY C2 C4 SING N N 6 A1PPY C2 C1 SING N N 7 A1PPY C4 N1 SING N N 8 A1PPY C7 N1 SING N N 9 A1PPY N1 C8 SING N N 10 A1PPY C8 C9 DOUB Y N 11 A1PPY C8 N4 SING Y N 12 A1PPY C9 C10 SING Y N 13 A1PPY N4 C15 DOUB Y N 14 A1PPY C12 C11 SING N N 15 A1PPY C12 C14 SING N N 16 A1PPY C12 C13 SING N N 17 A1PPY C10 N2 SING N N 18 A1PPY C10 N3 DOUB Y N 19 A1PPY C11 N2 SING N N 20 A1PPY C14 C13 SING N N 21 A1PPY C15 N3 SING Y N 22 A1PPY C13 H20 SING N N 23 A1PPY C13 H21 SING N N 24 A1PPY C15 H24 SING N N 25 A1PPY C11 H18 SING N N 26 A1PPY C11 H17 SING N N 27 A1PPY C12 H19 SING N N 28 A1PPY C1 H1 SING N N 29 A1PPY C1 H3 SING N N 30 A1PPY C1 H2 SING N N 31 A1PPY C14 H23 SING N N 32 A1PPY C14 H22 SING N N 33 A1PPY C3 H5 SING N N 34 A1PPY C3 H6 SING N N 35 A1PPY C3 H4 SING N N 36 A1PPY C4 H8 SING N N 37 A1PPY C5 H10 SING N N 38 A1PPY C5 H9 SING N N 39 A1PPY C6 H12 SING N N 40 A1PPY C6 H11 SING N N 41 A1PPY C7 H14 SING N N 42 A1PPY C7 H13 SING N N 43 A1PPY C9 H15 SING N N 44 A1PPY N2 H16 SING N N 45 A1PPY O1 H7 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PPY SMILES ACDLabs 14.52 "CC(C)(O)C1CCCN1c1ncnc(NCC2CC2)c1" A1PPY InChI InChI 1.06 "InChI=1S/C15H24N4O/c1-15(2,20)12-4-3-7-19(12)14-8-13(17-10-18-14)16-9-11-5-6-11/h8,10-12,20H,3-7,9H2,1-2H3,(H,16,17,18)/t12-/m0/s1" A1PPY InChIKey InChI 1.06 MDDXFCVYGNFNEW-LBPRGKRZSA-N A1PPY SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)[C@@H]1CCCN1c2cc(NCC3CC3)ncn2" A1PPY SMILES CACTVS 3.385 "CC(C)(O)[CH]1CCCN1c2cc(NCC3CC3)ncn2" A1PPY SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)([C@@H]1CCCN1c2cc(ncn2)NCC3CC3)O" A1PPY SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C1CCCN1c2cc(ncn2)NCC3CC3)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PPY "SYSTEMATIC NAME" ACDLabs 14.52 "2-[(2S)-1-{6-[(cyclopropylmethyl)amino]pyrimidin-4-yl}pyrrolidin-2-yl]propan-2-ol" A1PPY "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(2~{S})-1-[6-(cyclopropylmethylamino)pyrimidin-4-yl]pyrrolidin-2-yl]propan-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PPY "Create component" 2026-09-04 RCSB A1PPY "Initial release" 2026-11-04 RCSB #