data_A1PQU # _chem_comp.id A1PQU _chem_comp.name "N-{2-[(2R)-1,1-dioxo-1lambda~6~-thiolan-2-yl]ethyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PQU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15HQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PQU C13 C1 C 0 1 Y N N N N N -46.677 -29.300 5.005 -3.857 0.354 0.063 C13 A1PQU 1 A1PQU C11 C2 C 0 1 Y N N N N N -48.712 -28.767 5.865 -5.496 1.895 0.185 C11 A1PQU 2 A1PQU C12 C3 C 0 1 Y N N N N N -48.050 -28.991 4.680 -4.166 1.755 0.328 C12 A1PQU 3 A1PQU C1 C4 C 0 1 N N N N N N -45.427 -29.724 2.824 -1.371 0.177 0.354 C1 A1PQU 4 A1PQU C10 C5 C 0 1 Y N N N N N -46.563 -29.248 6.418 -5.092 -0.271 -0.235 C10 A1PQU 5 A1PQU C2 C6 C 0 1 N N N N N N -43.977 -29.890 0.845 1.043 0.006 0.637 C2 A1PQU 6 A1PQU C3 C7 C 0 1 N N N N N N -43.339 -28.594 0.330 2.126 -1.070 0.550 C3 A1PQU 7 A1PQU C4 C8 C 0 1 N N R N N N -44.054 -27.302 0.765 3.489 -0.449 0.864 C4 A1PQU 8 A1PQU C5 C9 C 0 1 N N N N N N -43.187 -26.057 0.540 4.583 -1.535 0.869 C5 A1PQU 9 A1PQU C6 C10 C 0 1 N N N N N N -43.565 -25.376 -0.785 5.896 -0.915 0.358 C6 A1PQU 10 A1PQU C7 C11 C 0 1 N N N N N N -45.021 -25.650 -1.173 5.541 -0.123 -0.927 C7 A1PQU 11 A1PQU C8 C12 C 0 1 Y N N N N N -45.469 -29.629 4.320 -2.690 -0.424 0.050 C8 A1PQU 12 A1PQU C9 C13 C 0 1 Y N N N N N -44.381 -29.765 6.364 -3.972 -2.258 -0.512 C9 A1PQU 13 A1PQU N1 N1 N 0 1 N N N N N N -44.209 -29.799 2.275 -0.262 -0.588 0.337 N1 A1PQU 14 A1PQU N2 N2 N 0 1 Y N N N N N -44.329 -29.856 5.033 -2.801 -1.719 -0.242 N2 A1PQU 15 A1PQU N3 N3 N 0 1 Y N N N N N -45.432 -29.474 7.135 -5.093 -1.566 -0.517 N3 A1PQU 16 A1PQU N4 N4 N 0 1 Y N N N N N -47.812 -28.921 6.908 -6.060 0.694 -0.150 N4 A1PQU 17 A1PQU O1 O1 O 0 1 N N N N N N -46.461 -29.738 2.159 -1.289 1.360 0.619 O1 A1PQU 18 A1PQU O2 O2 O 0 1 N N N N N N -45.920 -28.177 -1.023 3.051 0.620 -1.534 O2 A1PQU 19 A1PQU O3 O3 O 0 1 N N N N N N -46.661 -26.552 0.779 4.273 1.984 0.108 O3 A1PQU 20 A1PQU S1 S1 S 0 1 N N N N N N -45.628 -27.031 -0.149 3.976 0.715 -0.460 S1 A1PQU 21 A1PQU H15 H1 H 0 1 N N N N N N -49.757 -28.514 5.966 -6.039 2.820 0.315 H15 A1PQU 22 A1PQU H16 H2 H 0 1 N N N N N N -48.478 -28.944 3.690 -3.461 2.530 0.589 H16 A1PQU 23 A1PQU H2 H3 H 0 1 N N N N N N -44.936 -30.053 0.331 1.028 0.426 1.643 H2 A1PQU 24 A1PQU H3 H4 H 0 1 N N N N N N -43.303 -30.734 0.639 1.257 0.796 -0.083 H3 A1PQU 25 A1PQU H4 H5 H 0 1 N N N N N N -43.335 -28.629 -0.769 1.913 -1.860 1.270 H4 A1PQU 26 A1PQU H5 H6 H 0 1 N N N N N N -42.304 -28.553 0.699 2.141 -1.490 -0.456 H5 A1PQU 27 A1PQU H6 H7 H 0 1 N N N N N N -44.326 -27.374 1.829 3.458 0.062 1.826 H6 A1PQU 28 A1PQU H8 H8 H 0 1 N N N N N N -42.128 -26.353 0.507 4.725 -1.907 1.884 H8 A1PQU 29 A1PQU H7 H9 H 0 1 N N N N N N -43.344 -25.351 1.369 4.289 -2.356 0.216 H7 A1PQU 30 A1PQU H9 H10 H 0 1 N N N N N N -42.907 -25.756 -1.581 6.308 -0.242 1.109 H9 A1PQU 31 A1PQU H10 H11 H 0 1 N N N N N N -43.423 -24.290 -0.680 6.614 -1.701 0.126 H10 A1PQU 32 A1PQU H11 H12 H 0 1 N N N N N N -45.631 -24.753 -0.990 6.316 0.607 -1.158 H11 A1PQU 33 A1PQU H12 H13 H 0 1 N N N N N N -45.079 -25.921 -2.237 5.382 -0.799 -1.767 H12 A1PQU 34 A1PQU H13 H14 H 0 1 N N N N N N -43.453 -29.951 6.885 -4.014 -3.311 -0.748 H13 A1PQU 35 A1PQU H1 H15 H 0 1 N N N N N N -43.415 -29.792 2.883 -0.327 -1.533 0.126 H1 A1PQU 36 A1PQU H14 H16 H 0 1 N N N N N N -48.035 -28.811 7.877 -7.006 0.548 -0.305 H14 A1PQU 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PQU C7 C6 SING N N 1 A1PQU C7 S1 SING N N 2 A1PQU O2 S1 DOUB N N 3 A1PQU C6 C5 SING N N 4 A1PQU S1 C4 SING N N 5 A1PQU S1 O3 DOUB N N 6 A1PQU C3 C4 SING N N 7 A1PQU C3 C2 SING N N 8 A1PQU C5 C4 SING N N 9 A1PQU C2 N1 SING N N 10 A1PQU O1 C1 DOUB N N 11 A1PQU N1 C1 SING N N 12 A1PQU C1 C8 SING N N 13 A1PQU C8 C13 DOUB Y N 14 A1PQU C8 N2 SING Y N 15 A1PQU C12 C13 SING Y N 16 A1PQU C12 C11 DOUB Y N 17 A1PQU C13 C10 SING Y N 18 A1PQU N2 C9 DOUB Y N 19 A1PQU C11 N4 SING Y N 20 A1PQU C9 N3 SING Y N 21 A1PQU C10 N4 SING Y N 22 A1PQU C10 N3 DOUB Y N 23 A1PQU C11 H15 SING N N 24 A1PQU C12 H16 SING N N 25 A1PQU C2 H2 SING N N 26 A1PQU C2 H3 SING N N 27 A1PQU C3 H4 SING N N 28 A1PQU C3 H5 SING N N 29 A1PQU C4 H6 SING N N 30 A1PQU C5 H8 SING N N 31 A1PQU C5 H7 SING N N 32 A1PQU C6 H9 SING N N 33 A1PQU C6 H10 SING N N 34 A1PQU C7 H11 SING N N 35 A1PQU C7 H12 SING N N 36 A1PQU C9 H13 SING N N 37 A1PQU N1 H1 SING N N 38 A1PQU N4 H14 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PQU SMILES ACDLabs 14.52 "O=S1(=O)CCCC1CCNC(=O)c1ncnc2[NH]ccc21" A1PQU InChI InChI 1.06 "InChI=1S/C13H16N4O3S/c18-13(11-10-4-6-14-12(10)17-8-16-11)15-5-3-9-2-1-7-21(9,19)20/h4,6,8-9H,1-3,5,7H2,(H,15,18)(H,14,16,17)/t9-/m1/s1" A1PQU InChIKey InChI 1.06 HGPHRTRDRZNBDQ-SECBINFHSA-N A1PQU SMILES_CANONICAL CACTVS 3.385 "O=C(NCC[C@H]1CCC[S]1(=O)=O)c2ncnc3[nH]ccc23" A1PQU SMILES CACTVS 3.385 "O=C(NCC[CH]1CCC[S]1(=O)=O)c2ncnc3[nH]ccc23" A1PQU SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCC[C@H]3CCCS3(=O)=O" A1PQU SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NCCC3CCCS3(=O)=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PQU "SYSTEMATIC NAME" ACDLabs 14.52 "N-{2-[(2R)-1,1-dioxo-1lambda~6~-thiolan-2-yl]ethyl}-7H-pyrrolo[2,3-d]pyrimidine-4-carboxamide" A1PQU "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "~{N}-[2-[(2~{R})-1,1-bis(oxidanylidene)thiolan-2-yl]ethyl]-7~{H}-pyrrolo[2,3-d]pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PQU "Create component" 2026-09-04 RCSB A1PQU "Initial release" 2026-11-04 RCSB #