data_A1PRD # _chem_comp.id A1PRD _chem_comp.name "(7R)-5-(4-carbamamidobenzoyl)-5-azaspiro[3.5]nonane-7-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H21 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.366 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PRD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15RN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PRD C13 C1 C 0 1 N N N N N N -45.011 -26.774 0.079 3.273 -2.486 0.645 C13 A1PRD 1 A1PRD C17 C2 C 0 1 Y N N N N N -49.751 -29.004 4.157 -2.977 -1.251 0.368 C17 A1PRD 2 A1PRD C16 C3 C 0 1 Y N N N N N -48.942 -28.786 3.029 -1.677 -1.664 0.548 C16 A1PRD 3 A1PRD C15 C4 C 0 1 N N N N N N -43.413 -27.246 1.328 3.982 -1.336 -0.991 C15 A1PRD 4 A1PRD C11 C5 C 0 1 N N N N N N -44.201 -29.277 -0.136 3.788 -0.040 1.211 C11 A1PRD 5 A1PRD C12 C6 C 0 1 N N N N N N -44.570 -28.106 0.763 3.126 -1.015 0.239 C12 A1PRD 6 A1PRD C1 C7 C 0 1 N N N N N N -51.265 -29.417 6.697 -5.434 0.201 0.305 C1 A1PRD 7 A1PRD C10 C8 C 0 1 N N N N N N -43.506 -30.376 0.680 3.611 1.388 0.683 C10 A1PRD 8 A1PRD C14 C9 C 0 1 N N N N N N -43.576 -26.271 0.163 3.497 -2.789 -0.846 C14 A1PRD 9 A1PRD C2 C10 C 0 1 Y N N N N N -49.197 -28.959 5.461 -3.271 -0.257 -0.561 C2 A1PRD 10 A1PRD C3 C11 C 0 1 Y N N N N N -47.828 -28.694 5.624 -2.251 0.325 -1.307 C3 A1PRD 11 A1PRD C4 C12 C 0 1 Y N N N N N -47.038 -28.477 4.492 -0.948 -0.079 -1.128 C4 A1PRD 12 A1PRD C5 C13 C 0 1 Y N N N N N -47.572 -28.569 3.191 -0.651 -1.084 -0.204 C5 A1PRD 13 A1PRD C6 C14 C 0 1 N N N N N N -46.715 -28.226 2.026 0.745 -1.525 -0.013 C6 A1PRD 14 A1PRD C7 C15 C 0 1 N N N N N N -44.699 -29.537 2.762 1.495 0.761 -0.495 C7 A1PRD 15 A1PRD C8 C16 C 0 1 N N R N N N -44.412 -30.773 1.865 2.119 1.699 0.542 C8 A1PRD 16 A1PRD C9 C17 C 0 1 N N N N N N -43.808 -31.925 2.668 1.945 3.128 0.095 C9 A1PRD 17 A1PRD N1 N1 N 0 1 N N N N N N -51.675 -29.627 7.947 -6.681 0.688 0.146 N1 A1PRD 18 A1PRD N2 N2 N 0 1 N N N N N N -49.948 -29.198 6.637 -4.590 0.155 -0.745 N2 A1PRD 19 A1PRD N3 N3 N 0 1 N N N N N N -45.415 -28.585 1.893 1.750 -0.630 -0.086 N3 A1PRD 20 A1PRD O1 O1 O 0 1 N N N N N N -52.010 -29.429 5.723 -5.071 -0.195 1.395 O1 A1PRD 21 A1PRD O2 O2 O 0 1 N N N N N N -47.254 -27.457 1.242 0.988 -2.695 0.210 O2 A1PRD 22 A1PRD O3 O3 O 0 1 N N N N N N -44.211 -33.082 2.438 2.914 3.825 -0.091 O3 A1PRD 23 A1PRD O4 O4 O 0 1 N N N N N N -42.935 -31.616 3.499 0.714 3.626 -0.096 O4 A1PRD 24 A1PRD H13 H1 H 0 1 N N N N N N -45.731 -26.183 0.664 4.146 -2.682 1.267 H13 A1PRD 25 A1PRD H14 H2 H 0 1 N N N N N N -45.386 -26.897 -0.948 2.358 -2.922 1.047 H14 A1PRD 26 A1PRD H20 H3 H 0 1 N N N N N N -50.804 -29.208 4.029 -3.771 -1.701 0.945 H20 A1PRD 27 A1PRD H19 H4 H 0 1 N N N N N N -49.378 -28.786 2.041 -1.449 -2.435 1.269 H19 A1PRD 28 A1PRD H18 H5 H 0 1 N N N N N N -42.441 -27.760 1.352 3.636 -0.849 -1.903 H18 A1PRD 29 A1PRD H17 H6 H 0 1 N N N N N N -43.620 -26.806 2.315 5.051 -1.212 -0.824 H17 A1PRD 30 A1PRD H11 H7 H 0 1 N N N N N N -43.521 -28.927 -0.927 3.319 -0.127 2.191 H11 A1PRD 31 A1PRD H12 H8 H 0 1 N N N N N N -45.114 -29.686 -0.592 4.850 -0.270 1.291 H12 A1PRD 32 A1PRD H10 H9 H 0 1 N N N N N N -43.329 -31.254 0.041 4.064 2.092 1.381 H10 A1PRD 33 A1PRD H9 H10 H 0 1 N N N N N N -42.545 -30.000 1.061 4.095 1.478 -0.289 H9 A1PRD 34 A1PRD H16 H11 H 0 1 N N N N N N -42.955 -26.492 -0.717 4.276 -3.530 -1.029 H16 A1PRD 35 A1PRD H15 H12 H 0 1 N N N N N N -43.471 -25.209 0.429 2.577 -2.999 -1.392 H15 A1PRD 36 A1PRD H4 H13 H 0 1 N N N N N N -47.391 -28.658 6.611 -2.483 1.096 -2.027 H4 A1PRD 37 A1PRD H5 H14 H 0 1 N N N N N N -45.993 -28.233 4.617 -0.157 0.373 -1.708 H5 A1PRD 38 A1PRD H6 H15 H 0 1 N N N N N N -45.325 -29.821 3.621 0.420 0.936 -0.546 H6 A1PRD 39 A1PRD H7 H16 H 0 1 N N N N N N -43.758 -29.096 3.124 1.942 0.945 -1.472 H7 A1PRD 40 A1PRD H8 H17 H 0 1 N N N N N N -45.373 -31.115 1.452 1.626 1.557 1.503 H8 A1PRD 41 A1PRD H1 H18 H 0 1 N N N N N N -52.641 -29.808 8.133 -6.971 1.004 -0.724 H1 A1PRD 42 A1PRD H2 H19 H 0 1 N N N N N N -51.017 -29.604 8.700 -7.289 0.722 0.901 H2 A1PRD 43 A1PRD H3 H20 H 0 1 N N N N N N -49.447 -29.203 7.502 -4.901 0.407 -1.629 H3 A1PRD 44 A1PRD H21 H21 H 0 1 N N N N N N -42.620 -32.399 3.934 0.652 4.547 -0.383 H21 A1PRD 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PRD C11 C10 SING N N 1 A1PRD C11 C12 SING N N 2 A1PRD C13 C14 SING N N 3 A1PRD C13 C12 SING N N 4 A1PRD C14 C15 SING N N 5 A1PRD C10 C8 SING N N 6 A1PRD C12 C15 SING N N 7 A1PRD C12 N3 SING N N 8 A1PRD O2 C6 DOUB N N 9 A1PRD C8 C9 SING N N 10 A1PRD C8 C7 SING N N 11 A1PRD N3 C6 SING N N 12 A1PRD N3 C7 SING N N 13 A1PRD C6 C5 SING N N 14 A1PRD O3 C9 DOUB N N 15 A1PRD C9 O4 SING N N 16 A1PRD C16 C5 DOUB Y N 17 A1PRD C16 C17 SING Y N 18 A1PRD C5 C4 SING Y N 19 A1PRD C17 C2 DOUB Y N 20 A1PRD C4 C3 DOUB Y N 21 A1PRD C2 C3 SING Y N 22 A1PRD C2 N2 SING N N 23 A1PRD O1 C1 DOUB N N 24 A1PRD N2 C1 SING N N 25 A1PRD C1 N1 SING N N 26 A1PRD C13 H13 SING N N 27 A1PRD C13 H14 SING N N 28 A1PRD C17 H20 SING N N 29 A1PRD C16 H19 SING N N 30 A1PRD C15 H18 SING N N 31 A1PRD C15 H17 SING N N 32 A1PRD C11 H11 SING N N 33 A1PRD C11 H12 SING N N 34 A1PRD C10 H10 SING N N 35 A1PRD C10 H9 SING N N 36 A1PRD C14 H16 SING N N 37 A1PRD C14 H15 SING N N 38 A1PRD C3 H4 SING N N 39 A1PRD C4 H5 SING N N 40 A1PRD C7 H6 SING N N 41 A1PRD C7 H7 SING N N 42 A1PRD C8 H8 SING N N 43 A1PRD N1 H1 SING N N 44 A1PRD N1 H2 SING N N 45 A1PRD N2 H3 SING N N 46 A1PRD O4 H21 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PRD SMILES ACDLabs 14.52 "NC(=O)Nc1ccc(cc1)C(=O)N1CC(CCC21CCC2)C(=O)O" A1PRD InChI InChI 1.06 "InChI=1S/C17H21N3O4/c18-16(24)19-13-4-2-11(3-5-13)14(21)20-10-12(15(22)23)6-9-17(20)7-1-8-17/h2-5,12H,1,6-10H2,(H,22,23)(H3,18,19,24)/t12-/m1/s1" A1PRD InChIKey InChI 1.06 UQODTOWJGRYFAU-GFCCVEGCSA-N A1PRD SMILES_CANONICAL CACTVS 3.385 "NC(=O)Nc1ccc(cc1)C(=O)N2C[C@@H](CCC23CCC3)C(O)=O" A1PRD SMILES CACTVS 3.385 "NC(=O)Nc1ccc(cc1)C(=O)N2C[CH](CCC23CCC3)C(O)=O" A1PRD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1C(=O)N2C[C@@H](CCC23CCC3)C(=O)O)NC(=O)N" A1PRD SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1C(=O)N2CC(CCC23CCC3)C(=O)O)NC(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PRD "SYSTEMATIC NAME" ACDLabs 14.52 "(7R)-5-(4-carbamamidobenzoyl)-5-azaspiro[3.5]nonane-7-carboxylic acid" A1PRD "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(7~{R})-5-[4-(aminocarbonylamino)phenyl]carbonyl-5-azaspiro[3.5]nonane-7-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PRD "Create component" 2026-09-04 RCSB A1PRD "Initial release" 2026-11-04 RCSB #