data_A1PRF # _chem_comp.id A1PRF _chem_comp.name "(3R)-3-(4,4-difluorocyclohexyl)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 F2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PRF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15RO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PRF C13 C1 C 0 1 N N N N N N -45.604 -26.652 -0.980 -4.729 0.164 -0.151 C13 A1PRF 1 A1PRF C16 C2 C 0 1 N N N N N N -43.391 -27.772 0.655 -2.217 -1.273 0.305 C16 A1PRF 2 A1PRF C15 C3 C 0 1 N N N N N N -43.208 -26.521 -0.203 -3.491 -1.626 1.076 C15 A1PRF 3 A1PRF C11 C4 C 0 1 N N N N N N -44.485 -28.682 0.073 -2.233 0.214 -0.053 C11 A1PRF 4 A1PRF C12 C5 C 0 1 N N N N N N -45.804 -27.899 -0.117 -3.455 0.516 -0.922 C12 A1PRF 5 A1PRF C1 C6 C 0 1 N N N N N N -43.719 -31.974 2.023 -0.972 2.875 0.081 C1 A1PRF 6 A1PRF C10 C7 C 0 1 Y N N N N N -47.305 -29.176 5.156 3.836 -0.526 -0.318 C10 A1PRF 7 A1PRF C14 C8 C 0 1 N N N N N N -44.531 -25.765 -0.344 -4.713 -1.323 0.208 C14 A1PRF 8 A1PRF C2 C9 C 0 1 N N N N N N -43.563 -30.953 0.888 -0.975 2.054 -1.183 C2 A1PRF 9 A1PRF C3 C10 C 0 1 N N R N N N -44.716 -29.917 0.944 -0.959 0.566 -0.824 C3 A1PRF 10 A1PRF C4 C11 C 0 1 N N N N N N -46.164 -29.499 2.920 1.390 -0.029 -0.571 C4 A1PRF 11 A1PRF C5 C12 C 0 1 Y N N N N N -46.134 -29.320 4.387 2.600 -0.207 0.264 C5 A1PRF 12 A1PRF C6 C13 C 0 1 Y N N N N N -44.874 -29.288 6.328 3.619 -0.225 2.334 C6 A1PRF 13 A1PRF C7 C14 C 0 1 Y N N N N N -47.092 -29.081 6.550 4.961 -0.684 0.527 C7 A1PRF 14 A1PRF C8 C15 C 0 1 Y N N N N N -49.297 -28.919 6.165 5.627 -1.037 -1.586 C8 A1PRF 15 A1PRF C9 C16 C 0 1 Y N N N N N -48.717 -29.079 4.931 4.312 -0.763 -1.675 C9 A1PRF 16 A1PRF F1 F1 F 0 1 N N N N N N -44.359 -24.671 -1.100 -5.878 -1.645 0.913 F1 A1PRF 17 A1PRF F2 F2 F 0 1 N N N N N N -44.920 -25.340 0.863 -4.652 -2.085 -0.965 F2 A1PRF 18 A1PRF N1 N1 N 0 1 N N N N N N -44.954 -29.603 2.350 0.212 0.277 0.008 N1 A1PRF 19 A1PRF N2 N2 N 0 1 Y N N N N N -44.930 -29.367 5.000 2.544 -0.068 1.588 N2 A1PRF 20 A1PRF N3 N3 N 0 1 Y N N N N N -45.897 -29.146 7.179 4.800 -0.525 1.833 N3 A1PRF 21 A1PRF N4 N4 N 0 1 Y N N N N N -48.322 -28.928 7.145 6.027 -0.988 -0.278 N4 A1PRF 22 A1PRF O1 O1 O 0 1 N N N N N N -44.548 -32.905 1.865 -0.844 2.333 1.153 O1 A1PRF 23 A1PRF O2 O2 O 0 1 N N N N N N -47.235 -29.588 2.320 1.459 -0.160 -1.777 O2 A1PRF 24 A1PRF O3 O3 O 0 1 N N N N N N -43.021 -31.787 3.039 -1.111 4.208 0.015 O3 A1PRF 25 A1PRF H12 H1 H 0 1 N N N N N N -46.550 -26.095 -1.046 -4.776 0.757 0.763 H12 A1PRF 26 A1PRF H13 H2 H 0 1 N N N N N N -45.283 -26.951 -1.989 -5.600 0.380 -0.770 H13 A1PRF 27 A1PRF H17 H3 H 0 1 N N N N N N -42.442 -28.327 0.690 -1.346 -1.489 0.924 H17 A1PRF 28 A1PRF H16 H4 H 0 1 N N N N N N -43.677 -27.471 1.674 -2.170 -1.867 -0.608 H16 A1PRF 29 A1PRF H14 H5 H 0 1 N N N N N N -42.852 -26.816 -1.201 -3.480 -2.685 1.332 H14 A1PRF 30 A1PRF H15 H6 H 0 1 N N N N N N -42.465 -25.863 0.271 -3.538 -1.032 1.990 H15 A1PRF 31 A1PRF H9 H7 H 0 1 N N N N N N -44.150 -29.022 -0.918 -2.280 0.807 0.860 H9 A1PRF 32 A1PRF H10 H8 H 0 1 N N N N N N -46.182 -27.593 0.870 -3.408 -0.077 -1.835 H10 A1PRF 33 A1PRF H11 H9 H 0 1 N N N N N N -46.541 -28.555 -0.604 -3.466 1.576 -1.177 H11 A1PRF 34 A1PRF H2 H10 H 0 1 N N N N N N -43.590 -31.476 -0.079 -1.871 2.279 -1.760 H2 A1PRF 35 A1PRF H1 H11 H 0 1 N N N N N N -42.600 -30.432 0.996 -0.092 2.294 -1.774 H1 A1PRF 36 A1PRF H3 H12 H 0 1 N N N N N N -45.613 -30.421 0.555 -0.912 -0.027 -1.738 H3 A1PRF 37 A1PRF H5 H13 H 0 1 N N N N N N -43.890 -29.345 6.769 3.527 -0.104 3.403 H5 A1PRF 38 A1PRF H7 H14 H 0 1 N N N N N N -50.356 -28.803 6.343 6.272 -1.257 -2.424 H7 A1PRF 39 A1PRF H8 H15 H 0 1 N N N N N N -49.225 -29.123 3.979 3.723 -0.726 -2.579 H8 A1PRF 40 A1PRF H4 H16 H 0 1 N N N N N N -44.155 -29.454 2.932 0.138 0.305 0.974 H4 A1PRF 41 A1PRF H6 H17 H 0 1 N N N N N N -48.485 -28.838 8.128 6.931 -1.151 0.033 H6 A1PRF 42 A1PRF H18 H18 H 0 1 N N N N N N -43.211 -32.460 3.682 -1.103 4.692 0.852 H18 A1PRF 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PRF F1 C14 SING N N 1 A1PRF C13 C14 SING N N 2 A1PRF C13 C12 SING N N 3 A1PRF C14 C15 SING N N 4 A1PRF C14 F2 SING N N 5 A1PRF C15 C16 SING N N 6 A1PRF C12 C11 SING N N 7 A1PRF C11 C16 SING N N 8 A1PRF C11 C3 SING N N 9 A1PRF C2 C3 SING N N 10 A1PRF C2 C1 SING N N 11 A1PRF C3 N1 SING N N 12 A1PRF O1 C1 DOUB N N 13 A1PRF C1 O3 SING N N 14 A1PRF O2 C4 DOUB N N 15 A1PRF N1 C4 SING N N 16 A1PRF C4 C5 SING N N 17 A1PRF C5 N2 DOUB Y N 18 A1PRF C5 C10 SING Y N 19 A1PRF C9 C10 SING Y N 20 A1PRF C9 C8 DOUB Y N 21 A1PRF N2 C6 SING Y N 22 A1PRF C10 C7 DOUB Y N 23 A1PRF C8 N4 SING Y N 24 A1PRF C6 N3 DOUB Y N 25 A1PRF C7 N4 SING Y N 26 A1PRF C7 N3 SING Y N 27 A1PRF C13 H12 SING N N 28 A1PRF C13 H13 SING N N 29 A1PRF C16 H17 SING N N 30 A1PRF C16 H16 SING N N 31 A1PRF C15 H14 SING N N 32 A1PRF C15 H15 SING N N 33 A1PRF C11 H9 SING N N 34 A1PRF C12 H10 SING N N 35 A1PRF C12 H11 SING N N 36 A1PRF C2 H2 SING N N 37 A1PRF C2 H1 SING N N 38 A1PRF C3 H3 SING N N 39 A1PRF C6 H5 SING N N 40 A1PRF C8 H7 SING N N 41 A1PRF C9 H8 SING N N 42 A1PRF N1 H4 SING N N 43 A1PRF N4 H6 SING N N 44 A1PRF O3 H18 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PRF SMILES ACDLabs 14.52 "O=C(O)CC(NC(=O)c1ncnc2[NH]ccc12)C1CCC(F)(F)CC1" A1PRF InChI InChI 1.06 "InChI=1S/C16H18F2N4O3/c17-16(18)4-1-9(2-5-16)11(7-12(23)24)22-15(25)13-10-3-6-19-14(10)21-8-20-13/h3,6,8-9,11H,1-2,4-5,7H2,(H,22,25)(H,23,24)(H,19,20,21)/t11-/m1/s1" A1PRF InChIKey InChI 1.06 WLPPMAPJSJOKAJ-LLVKDONJSA-N A1PRF SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@@H](NC(=O)c1ncnc2[nH]ccc12)C3CCC(F)(F)CC3" A1PRF SMILES CACTVS 3.385 "OC(=O)C[CH](NC(=O)c1ncnc2[nH]ccc12)C3CCC(F)(F)CC3" A1PRF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)N[C@H](CC(=O)O)C3CCC(CC3)(F)F" A1PRF SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)C(=O)NC(CC(=O)O)C3CCC(CC3)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PRF "SYSTEMATIC NAME" ACDLabs 14.52 "(3R)-3-(4,4-difluorocyclohexyl)-3-[(7H-pyrrolo[2,3-d]pyrimidine-4-carbonyl)amino]propanoic acid" A1PRF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{R})-3-[4,4-bis(fluoranyl)cyclohexyl]-3-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylcarbonylamino)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PRF "Create component" 2026-09-04 RCSB A1PRF "Initial release" 2026-11-04 RCSB #