data_A1PRO # _chem_comp.id A1PRO _chem_comp.name "1-{[benzyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.404 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PRO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15QS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PRO C13 C1 C 0 1 Y N N N N N -48.752 -28.738 5.844 0.419 -3.589 -1.525 C13 A1PRO 1 A1PRO C18 C2 C 0 1 N N N N N N -43.366 -32.098 0.295 -4.130 2.321 0.662 C18 A1PRO 2 A1PRO C17 C3 C 0 1 N N N N N N -42.075 -31.309 0.065 -4.965 1.128 0.153 C17 A1PRO 3 A1PRO C16 C4 C 0 1 N N N N N N -41.965 -30.245 1.162 -4.023 0.400 -0.838 C16 A1PRO 4 A1PRO C15 C5 C 0 1 Y N N N N N -46.689 -28.995 4.929 0.289 -1.706 -0.295 C15 A1PRO 5 A1PRO C19 C6 C 0 1 N N N N N N -44.005 -31.546 1.564 -2.652 1.937 0.469 C19 A1PRO 6 A1PRO C11 C7 C 0 1 Y N N N N N -44.351 -29.317 6.267 0.744 -1.292 2.312 C11 A1PRO 7 A1PRO C12 C8 C 0 1 Y N N N N N -46.560 -29.032 6.342 0.673 -2.767 0.547 C12 A1PRO 8 A1PRO C1 C9 C 0 1 N N N N N N -43.170 -30.381 2.110 -2.641 0.524 -0.150 C1 A1PRO 9 A1PRO C10 C10 C 0 1 Y N N N N N -45.456 -29.147 4.223 0.150 -0.424 0.259 C10 A1PRO 10 A1PRO C14 C11 C 0 1 Y N N N N N -48.092 -28.803 4.644 0.138 -2.280 -1.630 C14 A1PRO 11 A1PRO C2 C12 C 0 1 N N N N N N -43.961 -29.062 2.251 -1.517 0.400 -1.180 C2 A1PRO 12 A1PRO C3 C13 C 0 1 N N N N N N -46.475 -29.041 1.940 0.813 0.965 -1.518 C3 A1PRO 13 A1PRO C4 C14 C 0 1 Y N N N N N -46.923 -30.340 1.305 2.063 1.417 -0.809 C4 A1PRO 14 A1PRO C5 C15 C 0 1 Y N N N N N -46.617 -30.587 -0.050 2.200 2.737 -0.423 C5 A1PRO 15 A1PRO C6 C16 C 0 1 Y N N N N N -47.007 -31.792 -0.653 3.347 3.152 0.227 C6 A1PRO 16 A1PRO C7 C17 C 0 1 Y N N N N N -47.709 -32.754 0.096 4.358 2.247 0.491 C7 A1PRO 17 A1PRO C8 C18 C 0 1 Y N N N N N -48.011 -32.516 1.451 4.221 0.926 0.105 C8 A1PRO 18 A1PRO C9 C19 C 0 1 Y N N N N N -47.615 -31.311 2.056 3.072 0.510 -0.541 C9 A1PRO 19 A1PRO N1 N1 N 0 1 N N N N N N -45.313 -29.117 2.828 -0.225 0.650 -0.528 N1 A1PRO 20 A1PRO N2 N2 N 0 1 Y N N N N N -44.312 -29.297 4.934 0.387 -0.269 1.558 N2 A1PRO 21 A1PRO N3 N3 N 0 1 Y N N N N N -45.416 -29.196 7.053 0.887 -2.510 1.837 N3 A1PRO 22 A1PRO N4 N4 N 0 1 Y N N N N N -47.823 -28.872 6.859 0.736 -3.893 -0.226 N4 A1PRO 23 A1PRO O1 O1 O 0 1 N N N N N N -42.712 -30.801 3.386 -2.500 -0.468 0.869 O1 A1PRO 24 A1PRO H13 H1 H 0 1 N N N N N N -49.816 -28.605 5.974 0.393 -4.298 -2.340 H13 A1PRO 25 A1PRO H19 H2 H 0 1 N N N N N N -44.047 -31.966 -0.559 -4.363 3.214 0.081 H19 A1PRO 26 A1PRO H20 H3 H 0 1 N N N N N N -43.138 -33.167 0.421 -4.335 2.498 1.717 H20 A1PRO 27 A1PRO H17 H4 H 0 1 N N N N N N -41.210 -31.987 0.115 -5.232 0.469 0.979 H17 A1PRO 28 A1PRO H18 H5 H 0 1 N N N N N N -42.105 -30.825 -0.922 -5.860 1.480 -0.360 H18 A1PRO 29 A1PRO H15 H6 H 0 1 N N N N N N -41.032 -30.392 1.727 -4.309 -0.646 -0.945 H15 A1PRO 30 A1PRO H16 H7 H 0 1 N N N N N N -41.964 -29.244 0.707 -4.019 0.901 -1.806 H16 A1PRO 31 A1PRO H22 H8 H 0 1 N N N N N N -45.020 -31.190 1.335 -2.168 2.644 -0.205 H22 A1PRO 32 A1PRO H21 H9 H 0 1 N N N N N N -44.058 -32.342 2.321 -2.141 1.927 1.431 H21 A1PRO 33 A1PRO H11 H10 H 0 1 N N N N N N -43.403 -29.447 6.768 0.927 -1.122 3.363 H11 A1PRO 34 A1PRO H14 H11 H 0 1 N N N N N N -48.540 -28.725 3.664 -0.144 -1.753 -2.530 H14 A1PRO 35 A1PRO H3 H12 H 0 1 N N N N N N -43.364 -28.390 2.885 -1.522 -0.605 -1.604 H3 A1PRO 36 A1PRO H2 H13 H 0 1 N N N N N N -44.054 -28.629 1.244 -1.670 1.129 -1.975 H2 A1PRO 37 A1PRO H5 H14 H 0 1 N N N N N N -46.231 -28.339 1.129 0.459 1.760 -2.175 H5 A1PRO 38 A1PRO H4 H15 H 0 1 N N N N N N -47.318 -28.646 2.526 1.032 0.076 -2.110 H4 A1PRO 39 A1PRO H6 H16 H 0 1 N N N N N N -46.081 -29.846 -0.625 1.410 3.445 -0.629 H6 A1PRO 40 A1PRO H7 H17 H 0 1 N N N N N N -46.769 -31.981 -1.689 3.454 4.184 0.528 H7 A1PRO 41 A1PRO H8 H18 H 0 1 N N N N N N -48.017 -33.678 -0.370 5.255 2.571 0.998 H8 A1PRO 42 A1PRO H9 H19 H 0 1 N N N N N N -48.546 -33.259 2.024 5.011 0.219 0.311 H9 A1PRO 43 A1PRO H10 H20 H 0 1 N N N N N N -47.841 -31.129 3.096 2.963 -0.522 -0.839 H10 A1PRO 44 A1PRO H12 H21 H 0 1 N N N N N N -48.040 -28.855 7.835 0.971 -4.777 0.097 H12 A1PRO 45 A1PRO H1 H22 H 0 1 N N N N N N -43.452 -30.887 3.976 -1.712 -0.356 1.419 H1 A1PRO 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PRO C6 C5 DOUB Y N 1 A1PRO C6 C7 SING Y N 2 A1PRO C5 C4 SING Y N 3 A1PRO C17 C18 SING N N 4 A1PRO C17 C16 SING N N 5 A1PRO C7 C8 DOUB Y N 6 A1PRO C18 C19 SING N N 7 A1PRO C16 C1 SING N N 8 A1PRO C4 C3 SING N N 9 A1PRO C4 C9 DOUB Y N 10 A1PRO C8 C9 SING Y N 11 A1PRO C19 C1 SING N N 12 A1PRO C3 N1 SING N N 13 A1PRO C1 C2 SING N N 14 A1PRO C1 O1 SING N N 15 A1PRO C2 N1 SING N N 16 A1PRO N1 C10 SING N N 17 A1PRO C10 C15 DOUB Y N 18 A1PRO C10 N2 SING Y N 19 A1PRO C14 C15 SING Y N 20 A1PRO C14 C13 DOUB Y N 21 A1PRO C15 C12 SING Y N 22 A1PRO N2 C11 DOUB Y N 23 A1PRO C13 N4 SING Y N 24 A1PRO C11 N3 SING Y N 25 A1PRO C12 N4 SING Y N 26 A1PRO C12 N3 DOUB Y N 27 A1PRO C13 H13 SING N N 28 A1PRO C18 H19 SING N N 29 A1PRO C18 H20 SING N N 30 A1PRO C17 H17 SING N N 31 A1PRO C17 H18 SING N N 32 A1PRO C16 H15 SING N N 33 A1PRO C16 H16 SING N N 34 A1PRO C19 H22 SING N N 35 A1PRO C19 H21 SING N N 36 A1PRO C11 H11 SING N N 37 A1PRO C14 H14 SING N N 38 A1PRO C2 H3 SING N N 39 A1PRO C2 H2 SING N N 40 A1PRO C3 H5 SING N N 41 A1PRO C3 H4 SING N N 42 A1PRO C5 H6 SING N N 43 A1PRO C6 H7 SING N N 44 A1PRO C7 H8 SING N N 45 A1PRO C8 H9 SING N N 46 A1PRO C9 H10 SING N N 47 A1PRO N4 H12 SING N N 48 A1PRO O1 H1 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PRO SMILES ACDLabs 14.52 "OC1(CCCC1)CN(Cc1ccccc1)c1ncnc2[NH]ccc21" A1PRO InChI InChI 1.06 "InChI=1S/C19H22N4O/c24-19(9-4-5-10-19)13-23(12-15-6-2-1-3-7-15)18-16-8-11-20-17(16)21-14-22-18/h1-3,6-8,11,14,24H,4-5,9-10,12-13H2,(H,20,21,22)" A1PRO InChIKey InChI 1.06 NTPQIBDOJAVFPP-UHFFFAOYSA-N A1PRO SMILES_CANONICAL CACTVS 3.385 "OC1(CCCC1)CN(Cc2ccccc2)c3ncnc4[nH]ccc34" A1PRO SMILES CACTVS 3.385 "OC1(CCCC1)CN(Cc2ccccc2)c3ncnc4[nH]ccc34" A1PRO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN(CC2(CCCC2)O)c3c4cc[nH]c4ncn3" A1PRO SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CN(CC2(CCCC2)O)c3c4cc[nH]c4ncn3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PRO "SYSTEMATIC NAME" ACDLabs 14.52 "1-{[benzyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" A1PRO "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "1-[[(phenylmethyl)-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl]cyclopentan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PRO "Create component" 2026-09-04 RCSB A1PRO "Initial release" 2026-11-04 RCSB #