data_A1PRP # _chem_comp.id A1PRP _chem_comp.name "(5S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-7-oxa-1-azaspiro[4.4]nonan-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15QT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PRP C13 C1 C 0 1 Y N N N N N -46.712 -29.305 5.062 -1.409 -0.073 0.563 C13 A1PRP 1 A1PRP C11 C2 C 0 1 Y N N N N N -48.694 -28.831 6.052 -2.855 -1.735 1.033 C11 A1PRP 2 A1PRP C12 C3 C 0 1 Y N N N N N -48.124 -29.101 4.834 -1.585 -1.352 1.247 C12 A1PRP 3 A1PRP C1 C4 C 0 1 N N N N N N -43.816 -31.610 2.860 1.002 -0.571 -1.199 C1 A1PRP 4 A1PRP C10 C5 C 0 1 Y N N N N N -46.492 -29.160 6.454 -2.646 0.226 -0.037 C10 A1PRP 5 A1PRP C2 C6 C 0 1 N N N N N N -42.107 -30.310 2.011 1.788 -2.588 -0.435 C2 A1PRP 6 A1PRP C3 C7 C 0 1 N N N N N N -43.395 -29.550 1.700 2.018 -1.610 0.741 C3 A1PRP 7 A1PRP C4 C8 C 0 1 N N S N N N -44.544 -30.474 2.121 1.718 -0.251 0.087 C4 A1PRP 8 A1PRP C5 C9 C 0 1 N N N N N N -45.309 -30.986 0.891 3.025 0.507 -0.189 C5 A1PRP 9 A1PRP C6 C10 C 0 1 N N N N N N -46.468 -30.004 0.700 3.109 1.496 1.005 C6 A1PRP 10 A1PRP C7 C11 C 0 1 N N N N N N -46.743 -29.433 2.096 1.616 1.842 1.233 C7 A1PRP 11 A1PRP C8 C12 C 0 1 Y N N N N N -45.550 -29.616 4.302 -0.346 0.829 0.398 C8 A1PRP 12 A1PRP C9 C13 C 0 1 Y N N N N N -44.301 -29.554 6.262 -1.734 2.169 -0.866 C9 A1PRP 13 A1PRP N1 N1 N 0 1 N N N N N N -45.590 -29.811 2.911 0.890 0.580 0.969 N1 A1PRP 14 A1PRP N2 N2 N 0 1 Y N N N N N -44.352 -29.734 4.942 -0.556 1.928 -0.320 N2 A1PRP 15 A1PRP N3 N3 N 0 1 Y N N N N N -45.302 -29.276 7.096 -2.759 1.355 -0.734 N3 A1PRP 16 A1PRP N4 N4 N 0 1 Y N N N N N -47.711 -28.874 7.027 -3.499 -0.800 0.266 N4 A1PRP 17 A1PRP O1 O1 O 0 1 N N N N N N -44.360 -32.511 3.491 0.637 0.242 -2.014 O1 A1PRP 18 A1PRP O2 O2 O 0 1 N N N N N N -42.507 -31.479 2.706 0.837 -1.900 -1.302 O2 A1PRP 19 A1PRP H13 H1 H 0 1 N N N N N N -49.739 -28.619 6.223 -3.301 -2.645 1.408 H13 A1PRP 20 A1PRP H14 H2 H 0 1 N N N N N N -48.634 -29.152 3.884 -0.839 -1.887 1.816 H14 A1PRP 21 A1PRP H1 H3 H 0 1 N N N N N N -41.586 -30.577 1.080 2.724 -2.769 -0.965 H1 A1PRP 22 A1PRP H2 H4 H 0 1 N N N N N N -41.444 -29.698 2.640 1.367 -3.526 -0.077 H2 A1PRP 23 A1PRP H3 H5 H 0 1 N N N N N N -43.432 -28.610 2.271 1.325 -1.813 1.557 H3 A1PRP 24 A1PRP H4 H6 H 0 1 N N N N N N -43.458 -29.328 0.624 3.050 -1.655 1.089 H4 A1PRP 25 A1PRP H6 H7 H 0 1 N N N N N N -45.690 -32.002 1.070 3.875 -0.175 -0.186 H6 A1PRP 26 A1PRP H5 H8 H 0 1 N N N N N N -44.657 -30.989 0.005 2.967 1.045 -1.136 H5 A1PRP 27 A1PRP H7 H9 H 0 1 N N N N N N -46.183 -29.201 0.004 3.536 1.012 1.884 H7 A1PRP 28 A1PRP H8 H10 H 0 1 N N N N N N -47.356 -30.526 0.314 3.679 2.385 0.737 H8 A1PRP 29 A1PRP H10 H11 H 0 1 N N N N N N -46.839 -28.338 2.051 1.454 2.165 2.262 H10 A1PRP 30 A1PRP H9 H12 H 0 1 N N N N N N -47.665 -29.865 2.512 1.296 2.618 0.537 H9 A1PRP 31 A1PRP H11 H13 H 0 1 N N N N N N -43.324 -29.645 6.713 -1.864 3.076 -1.439 H11 A1PRP 32 A1PRP H12 H14 H 0 1 N N N N N N -47.864 -28.720 8.003 -4.424 -0.856 -0.020 H12 A1PRP 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PRP C6 C5 SING N N 1 A1PRP C6 C7 SING N N 2 A1PRP C5 C4 SING N N 3 A1PRP C3 C2 SING N N 4 A1PRP C3 C4 SING N N 5 A1PRP C2 O2 SING N N 6 A1PRP C7 N1 SING N N 7 A1PRP C4 C1 SING N N 8 A1PRP C4 N1 SING N N 9 A1PRP O2 C1 SING N N 10 A1PRP C1 O1 DOUB N N 11 A1PRP N1 C8 SING N N 12 A1PRP C8 N2 DOUB Y N 13 A1PRP C8 C13 SING Y N 14 A1PRP C12 C13 SING Y N 15 A1PRP C12 C11 DOUB Y N 16 A1PRP N2 C9 SING Y N 17 A1PRP C13 C10 DOUB Y N 18 A1PRP C11 N4 SING Y N 19 A1PRP C9 N3 DOUB Y N 20 A1PRP C10 N4 SING Y N 21 A1PRP C10 N3 SING Y N 22 A1PRP C11 H13 SING N N 23 A1PRP C12 H14 SING N N 24 A1PRP C2 H1 SING N N 25 A1PRP C2 H2 SING N N 26 A1PRP C3 H3 SING N N 27 A1PRP C3 H4 SING N N 28 A1PRP C5 H6 SING N N 29 A1PRP C5 H5 SING N N 30 A1PRP C6 H7 SING N N 31 A1PRP C6 H8 SING N N 32 A1PRP C7 H10 SING N N 33 A1PRP C7 H9 SING N N 34 A1PRP C9 H11 SING N N 35 A1PRP N4 H12 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PRP SMILES ACDLabs 14.52 "O=C1OCCC11CCCN1c1ncnc2[NH]ccc21" A1PRP InChI InChI 1.06 "InChI=1S/C13H14N4O2/c18-12-13(4-7-19-12)3-1-6-17(13)11-9-2-5-14-10(9)15-8-16-11/h2,5,8H,1,3-4,6-7H2,(H,14,15,16)/t13-/m0/s1" A1PRP InChIKey InChI 1.06 QTYPXUSKADANKN-ZDUSSCGKSA-N A1PRP SMILES_CANONICAL CACTVS 3.385 "O=C1OCC[C@@]12CCCN2c3ncnc4[nH]ccc34" A1PRP SMILES CACTVS 3.385 "O=C1OCC[C]12CCCN2c3ncnc4[nH]ccc34" A1PRP SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC[C@@]34CCOC4=O" A1PRP SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCCC34CCOC4=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PRP "SYSTEMATIC NAME" ACDLabs 14.52 "(5S)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-7-oxa-1-azaspiro[4.4]nonan-6-one" A1PRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(5~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-7-oxa-1-azaspiro[4.4]nonan-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PRP "Create component" 2026-09-04 RCSB A1PRP "Initial release" 2026-11-04 RCSB #