data_A1PRV # _chem_comp.id A1PRV _chem_comp.name "(1R,3S)-3-methyl-1-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-10-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1PRV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 15QF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1PRV C13 C1 C 0 1 N N N N N N -42.798 -30.959 0.861 3.546 0.765 0.542 C13 A1PRV 1 A1PRV C11 C2 C 0 1 Y N N N N N -48.185 -28.757 4.575 -2.784 -1.832 0.019 C11 A1PRV 2 A1PRV C12 C3 C 0 1 Y N N N N N -46.799 -28.978 4.884 -2.534 -0.392 -0.010 C12 A1PRV 3 A1PRV C1 C4 C 0 1 N N N N N N -42.589 -33.115 -0.513 5.921 0.425 -0.245 C1 A1PRV 4 A1PRV C10 C5 C 0 1 Y N N N N N -48.839 -28.671 5.779 -4.111 -1.998 -0.105 C10 A1PRV 5 A1PRV C2 C6 C 0 1 N N S N N N -43.482 -31.944 -0.100 4.446 0.388 -0.652 C2 A1PRV 6 A1PRV C3 C7 C 0 1 N N N N N N -44.786 -32.416 0.546 4.018 -1.057 -1.010 C3 A1PRV 7 A1PRV C4 C8 C 0 1 N N N N N N -44.900 -31.735 1.904 2.485 -1.023 -0.792 C4 A1PRV 8 A1PRV C5 C9 C 0 1 N N R N N N -43.755 -30.717 2.042 2.299 -0.132 0.453 C5 A1PRV 9 A1PRV C6 C10 C 0 1 N N N N N N -44.251 -29.258 2.089 1.044 0.729 0.299 C6 A1PRV 10 A1PRV C7 C11 C 0 1 Y N N N N N -45.592 -29.163 4.169 -1.393 0.420 0.073 C7 A1PRV 11 A1PRV C8 C12 C 0 1 Y N N N N N -44.460 -29.334 6.190 -2.751 2.275 -0.128 C8 A1PRV 12 A1PRV C9 C13 C 0 1 Y N N N N N -46.665 -28.999 6.296 -3.791 0.222 -0.155 C9 A1PRV 13 A1PRV N1 N1 N 0 1 N N N N N N -45.535 -29.158 2.776 -0.135 -0.136 0.216 N1 A1PRV 14 A1PRV N2 N2 N 0 1 Y N N N N N -44.435 -29.332 4.856 -1.552 1.739 0.009 N2 A1PRV 15 A1PRV N3 N3 N 0 1 Y N N N N N -45.512 -29.184 6.996 -3.847 1.552 -0.210 N3 A1PRV 16 A1PRV N4 N4 N 0 1 Y N N N N N -47.926 -28.807 6.810 -4.725 -0.776 -0.210 N4 A1PRV 17 A1PRV O1 O1 O 0 1 N N N N N N -43.032 -31.012 3.230 2.196 -0.944 1.625 O1 A1PRV 18 A1PRV H17 H1 H 0 1 N N N N N N -41.853 -31.387 1.226 4.073 0.581 1.479 H17 A1PRV 19 A1PRV H18 H2 H 0 1 N N N N N N -42.595 -30.010 0.343 3.257 1.814 0.477 H18 A1PRV 20 A1PRV H16 H3 H 0 1 N N N N N N -48.624 -28.675 3.592 -2.044 -2.612 0.116 H16 A1PRV 21 A1PRV H3 H4 H 0 1 N N N N N N -41.666 -32.729 -0.971 6.537 0.092 -1.080 H3 A1PRV 22 A1PRV H1 H5 H 0 1 N N N N N N -42.335 -33.713 0.375 6.197 1.443 0.027 H1 A1PRV 23 A1PRV H2 H6 H 0 1 N N N N N N -43.123 -33.745 -1.239 6.078 -0.235 0.609 H2 A1PRV 24 A1PRV H15 H7 H 0 1 N N N N N N -49.901 -28.521 5.902 -4.620 -2.951 -0.121 H15 A1PRV 25 A1PRV H4 H8 H 0 1 N N N N N N -43.745 -31.388 -1.012 4.267 1.060 -1.492 H4 A1PRV 26 A1PRV H5 H9 H 0 1 N N N N N N -45.641 -32.136 -0.087 4.256 -1.285 -2.049 H5 A1PRV 27 A1PRV H6 H10 H 0 1 N N N N N N -44.767 -33.508 0.675 4.488 -1.776 -0.338 H6 A1PRV 28 A1PRV H7 H11 H 0 1 N N N N N N -45.867 -31.217 1.978 1.987 -0.580 -1.655 H7 A1PRV 29 A1PRV H8 H12 H 0 1 N N N N N N -44.825 -32.487 2.703 2.104 -2.026 -0.604 H8 A1PRV 30 A1PRV H10 H13 H 0 1 N N N N N N -43.510 -28.644 2.622 0.949 1.390 1.161 H10 A1PRV 31 A1PRV H11 H14 H 0 1 N N N N N N -44.364 -28.884 1.061 1.122 1.326 -0.610 H11 A1PRV 32 A1PRV H13 H15 H 0 1 N N N N N N -43.508 -29.475 6.679 -2.836 3.350 -0.176 H13 A1PRV 33 A1PRV H12 H16 H 0 1 N N N N N N -45.956 -28.302 2.475 -0.033 -1.100 0.261 H12 A1PRV 34 A1PRV H14 H17 H 0 1 N N N N N N -48.150 -28.771 7.784 -5.680 -0.640 -0.309 H14 A1PRV 35 A1PRV H9 H18 H 0 1 N N N N N N -43.592 -30.874 3.985 1.429 -1.532 1.629 H9 A1PRV 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1PRV C1 C2 SING N N 1 A1PRV C2 C3 SING N N 2 A1PRV C2 C13 SING N N 3 A1PRV C3 C4 SING N N 4 A1PRV C13 C5 SING N N 5 A1PRV C4 C5 SING N N 6 A1PRV C5 C6 SING N N 7 A1PRV C5 O1 SING N N 8 A1PRV C6 N1 SING N N 9 A1PRV N1 C7 SING N N 10 A1PRV C7 N2 DOUB Y N 11 A1PRV C7 C12 SING Y N 12 A1PRV C11 C12 SING Y N 13 A1PRV C11 C10 DOUB Y N 14 A1PRV N2 C8 SING Y N 15 A1PRV C12 C9 DOUB Y N 16 A1PRV C10 N4 SING Y N 17 A1PRV C8 N3 DOUB Y N 18 A1PRV C9 N4 SING Y N 19 A1PRV C9 N3 SING Y N 20 A1PRV C13 H17 SING N N 21 A1PRV C13 H18 SING N N 22 A1PRV C11 H16 SING N N 23 A1PRV C1 H3 SING N N 24 A1PRV C1 H1 SING N N 25 A1PRV C1 H2 SING N N 26 A1PRV C10 H15 SING N N 27 A1PRV C2 H4 SING N N 28 A1PRV C3 H5 SING N N 29 A1PRV C3 H6 SING N N 30 A1PRV C4 H7 SING N N 31 A1PRV C4 H8 SING N N 32 A1PRV C6 H10 SING N N 33 A1PRV C6 H11 SING N N 34 A1PRV C8 H13 SING N N 35 A1PRV N1 H12 SING N N 36 A1PRV N4 H14 SING N N 37 A1PRV O1 H9 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1PRV SMILES ACDLabs 14.52 "CC1CCC(O)(C1)CNc1ncnc2[NH]ccc21" A1PRV InChI InChI 1.06 "InChI=1S/C13H18N4O/c1-9-2-4-13(18,6-9)7-15-12-10-3-5-14-11(10)16-8-17-12/h3,5,8-9,18H,2,4,6-7H2,1H3,(H2,14,15,16,17)/t9-,13+/m0/s1" A1PRV InChIKey InChI 1.06 AFAKSKLOZDLIDK-TVQRCGJNSA-N A1PRV SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CC[C@](O)(CNc2ncnc3[nH]ccc23)C1" A1PRV SMILES CACTVS 3.385 "C[CH]1CC[C](O)(CNc2ncnc3[nH]ccc23)C1" A1PRV SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CC[C@@](C1)(CNc2c3cc[nH]c3ncn2)O" A1PRV SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CCC(C1)(CNc2c3cc[nH]c3ncn2)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1PRV "SYSTEMATIC NAME" ACDLabs 14.52 "(1R,3S)-3-methyl-1-{[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]methyl}cyclopentan-1-ol" A1PRV "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},3~{S})-3-methyl-1-[(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)methyl]cyclopentan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1PRV "Create component" 2026-09-04 RCSB A1PRV "Initial release" 2026-11-04 RCSB #