data_A1S # _chem_comp.id A1S _chem_comp.name "isopentyl-Coenzyme A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H46 N7 O16 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms isopentyl-CoA _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-05 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 837.667 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W8A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1S C1 C1 C 0 1 N N N -29.042 24.525 -13.600 -12.015 -3.789 -0.414 C1 A1S 1 A1S C2 C2 C 0 1 N N N -30.326 25.149 -14.134 -13.121 -4.369 -1.299 C2 A1S 2 A1S C3 C3 C 0 1 N N N -30.319 25.164 -15.658 -13.572 -5.717 -0.734 C3 A1S 3 A1S C4 C4 C 0 1 N N N -31.745 25.268 -16.174 -14.760 -6.238 -1.544 C4 A1S 4 A1S C5 C5 C 0 1 N N N -29.477 26.308 -16.208 -12.418 -6.718 -0.820 C5 A1S 5 A1S O7A O1 O 0 1 N N N -15.649 17.884 -15.257 9.906 2.636 -0.399 O7A A1S 6 A1S P3B P1 P 0 1 N N N -15.282 18.510 -16.583 8.916 1.714 -1.271 P3B A1S 7 A1S O9A O2 O 0 1 N N N -14.635 19.873 -16.459 7.964 2.649 -2.172 O9A A1S 8 A1S O8A O3 O 0 1 N N N -14.567 17.579 -17.536 9.712 0.828 -2.150 O8A A1S 9 A1S O3B O4 O 0 1 N N N -16.670 18.801 -17.363 8.010 0.818 -0.286 O3B A1S 10 A1S C3B C6 C 0 1 N N S -17.827 19.308 -16.708 7.103 -0.181 -0.756 C3B A1S 11 A1S C2B C7 C 0 1 N N R -17.675 20.739 -16.237 7.464 -1.561 -0.162 C2B A1S 12 A1S O2B O5 O 0 1 N N N -16.918 21.513 -17.170 8.606 -1.457 0.690 O2B A1S 13 A1S C1B C8 C 0 1 N N R -19.096 21.266 -16.246 6.212 -1.958 0.652 C1B A1S 14 A1S N9A N1 N 0 1 Y N N -19.652 21.191 -14.875 5.966 -3.398 0.539 N9A A1S 15 A1S C8A C9 C 0 1 Y N N -20.536 20.293 -14.414 5.126 -4.006 -0.347 C8A A1S 16 A1S N7A N2 N 0 1 Y N N -20.790 20.564 -13.115 5.150 -5.295 -0.170 N7A A1S 17 A1S C5A C10 C 0 1 Y N N -20.047 21.636 -12.766 6.005 -5.596 0.837 C5A A1S 18 A1S C6A C11 C 0 1 Y N N -19.890 22.363 -11.592 6.426 -6.786 1.454 C6A A1S 19 A1S N6A N3 N 0 1 N N N -20.569 22.032 -10.470 5.935 -8.011 1.037 N6A A1S 20 A1S N1A N4 N 0 1 Y N N -19.048 23.419 -11.578 7.306 -6.708 2.446 N1A A1S 21 A1S C2A C12 C 0 1 Y N N -18.358 23.778 -12.673 7.780 -5.544 2.851 C2A A1S 22 A1S N3A N5 N 0 1 Y N N -18.497 23.098 -13.817 7.415 -4.404 2.303 N3A A1S 23 A1S C4A C13 C 0 1 Y N N -19.333 22.025 -13.882 6.543 -4.383 1.301 C4A A1S 24 A1S O4B O6 O 0 1 N N N -19.835 20.434 -17.135 5.130 -1.214 0.051 O4B A1S 25 A1S C4B C14 C 0 1 N N R -18.991 19.414 -17.679 5.677 0.093 -0.230 C4B A1S 26 A1S C5B C15 C 0 1 N N N -19.758 18.115 -17.843 4.842 0.800 -1.299 C5B A1S 27 A1S O5B O7 O 0 1 N N N -20.254 17.693 -16.575 3.541 1.082 -0.779 O5B A1S 28 A1S P1A P2 P 0 1 N N N -20.538 16.133 -16.310 2.396 1.824 -1.634 P1A A1S 29 A1S O1A O8 O 0 1 N N N -21.255 15.982 -14.990 1.967 0.894 -2.876 O1A A1S 30 A1S O2A O9 O 0 1 N N N -19.230 15.413 -16.523 2.916 3.114 -2.139 O2A A1S 31 A1S O3A O10 O 0 1 N N N -21.454 15.668 -17.546 1.115 2.091 -0.696 O3A A1S 32 A1S P2A P3 P 0 1 N N N -22.953 16.044 -17.990 -0.191 3.024 -0.827 P2A A1S 33 A1S O4A O11 O 0 1 N N N -23.576 14.734 -18.415 -1.270 2.306 -1.782 O4A A1S 34 A1S O5A O12 O 0 1 N N N -22.921 17.174 -18.983 0.191 4.330 -1.409 O5A A1S 35 A1S O6A O13 O 0 1 N N N -23.706 16.540 -16.656 -0.834 3.253 0.631 O6A A1S 36 A1S CCP C16 C 0 1 N N N -23.687 17.907 -16.230 -1.944 4.123 0.864 CCP A1S 37 A1S CBP C17 C 0 1 N N N -24.678 18.141 -15.082 -2.300 4.109 2.352 CBP A1S 38 A1S CDP C18 C 0 1 N N N -24.522 19.594 -14.630 -2.669 2.685 2.775 CDP A1S 39 A1S CEP C19 C 0 1 N N N -26.085 17.951 -15.642 -1.097 4.587 3.168 CEP A1S 40 A1S CAP C20 C 0 1 N N R -24.387 17.137 -13.946 -3.488 5.039 2.601 CAP A1S 41 A1S OAP O14 O 0 1 N N N -23.027 17.258 -13.477 -3.101 6.389 2.333 OAP A1S 42 A1S C9P C21 C 0 1 N N N -25.317 17.253 -12.759 -4.628 4.654 1.693 C9P A1S 43 A1S O9P O15 O 0 1 N N N -26.424 16.734 -12.806 -4.968 5.397 0.798 O9P A1S 44 A1S N8P N6 N 0 1 N N N -24.884 17.888 -11.743 -5.268 3.482 1.877 N8P A1S 45 A1S C7P C22 C 0 1 N N N -25.550 18.149 -10.467 -6.311 3.062 0.936 C7P A1S 46 A1S C6P C23 C 0 1 N N N -26.752 19.073 -10.721 -6.873 1.707 1.370 C6P A1S 47 A1S C5P C24 C 0 1 N N N -26.315 20.474 -11.104 -7.945 1.276 0.403 C5P A1S 48 A1S O5P O16 O 0 1 N N N -25.241 20.931 -10.731 -8.231 1.982 -0.540 O5P A1S 49 A1S N4P N7 N 0 1 N N N -27.124 21.138 -11.814 -8.586 0.104 0.586 N4P A1S 50 A1S C3P C25 C 0 1 N N N -26.933 22.497 -12.313 -9.628 -0.315 -0.354 C3P A1S 51 A1S C2P C26 C 0 1 N N N -27.695 23.419 -11.363 -10.190 -1.671 0.079 C2P A1S 52 A1S S1P S1 S 0 1 N N N -29.293 23.767 -12.030 -11.481 -2.190 -1.085 S1P A1S 53 A1S H1 H1 H 0 1 N N N -28.692 23.763 -14.312 -12.396 -3.649 0.597 H1 A1S 54 A1S H2 H2 H 0 1 N N N -28.279 25.310 -13.499 -11.169 -4.476 -0.393 H2 A1S 55 A1S H3 H3 H 0 1 N N N -30.409 26.181 -13.762 -13.967 -3.682 -1.320 H3 A1S 56 A1S H4 H4 H 0 1 N N N -31.187 24.562 -13.782 -12.741 -4.508 -2.311 H4 A1S 57 A1S H5 H5 H 0 1 N N N -29.889 24.215 -16.012 -13.869 -5.593 0.308 H5 A1S 58 A1S H6 H6 H 0 1 N N N -32.343 24.438 -15.771 -14.463 -6.362 -2.586 H6 A1S 59 A1S H7 H7 H 0 1 N N N -32.182 26.225 -15.852 -15.082 -7.199 -1.142 H7 A1S 60 A1S H8 H8 H 0 1 N N N -31.742 25.217 -17.273 -15.582 -5.525 -1.483 H8 A1S 61 A1S H9 H9 H 0 1 N N N -28.448 26.222 -15.828 -12.121 -6.842 -1.861 H9 A1S 62 A1S H10 H10 H 0 1 N N N -29.467 26.260 -17.307 -11.571 -6.347 -0.242 H10 A1S 63 A1S H11 H11 H 0 1 N N N -29.908 27.268 -15.886 -12.739 -7.679 -0.417 H11 A1S 64 A1S H12 H12 H 0 1 N N N -15.360 16.979 -15.243 10.483 3.204 -0.929 H12 A1S 65 A1S H13 H13 H 0 1 N N N -13.868 19.912 -17.018 7.412 3.257 -1.661 H13 A1S 66 A1S H14 H14 H 0 1 N N N -18.112 18.668 -15.860 7.110 -0.220 -1.845 H14 A1S 67 A1S H15 H15 H 0 1 N N N -17.249 20.776 -15.223 7.647 -2.283 -0.958 H15 A1S 68 A1S H16 H16 H 0 1 N N N -16.838 22.404 -16.851 8.877 -2.295 1.090 H16 A1S 69 A1S H17 H17 H 0 1 N N N -19.098 22.309 -16.595 6.334 -1.676 1.698 H17 A1S 70 A1S H18 H18 H 0 1 N N N -20.972 19.487 -14.986 4.528 -3.493 -1.086 H18 A1S 71 A1S H19 H19 H 0 1 N N N -20.330 22.667 -9.736 5.293 -8.055 0.311 H19 A1S 72 A1S H20 H20 H 0 1 N N N -21.552 22.083 -10.648 6.234 -8.826 1.470 H20 A1S 73 A1S H21 H21 H 0 1 N N N -17.686 24.622 -12.630 8.494 -5.526 3.661 H21 A1S 74 A1S H22 H22 H 0 1 N N N -18.607 19.727 -18.661 5.716 0.691 0.680 H22 A1S 75 A1S H23 H23 H 0 1 N N N -20.600 18.271 -18.533 5.330 1.733 -1.582 H23 A1S 76 A1S H24 H24 H 0 1 N N N -19.089 17.343 -18.250 4.752 0.157 -2.174 H24 A1S 77 A1S H25 H25 H 0 1 N N N -20.754 15.411 -14.420 1.617 0.030 -2.618 H25 A1S 78 A1S H26 H26 H 0 1 N N N -23.884 14.805 -19.311 -1.566 1.443 -1.462 H26 A1S 79 A1S H27 H27 H 0 1 N N N -22.673 18.163 -15.888 -1.681 5.137 0.563 H27 A1S 80 A1S H28 H28 H 0 1 N N N -23.961 18.552 -17.078 -2.801 3.782 0.283 H28 A1S 81 A1S H29 H29 H 0 1 N N N -25.220 19.799 -13.805 -1.789 2.046 2.705 H29 A1S 82 A1S H30 H30 H 0 1 N N N -23.490 19.763 -14.288 -3.031 2.694 3.803 H30 A1S 83 A1S H31 H31 H 0 1 N N N -24.744 20.266 -15.472 -3.450 2.302 2.118 H31 A1S 84 A1S H32 H32 H 0 1 N N N -26.823 18.112 -14.843 -0.872 5.622 2.911 H32 A1S 85 A1S H33 H33 H 0 1 N N N -26.258 18.675 -16.452 -1.330 4.520 4.231 H33 A1S 86 A1S H34 H34 H 0 1 N N N -26.188 16.929 -16.036 -0.234 3.961 2.945 H34 A1S 87 A1S H35 H35 H 0 1 N N N -24.517 16.129 -14.367 -3.806 4.952 3.640 H35 A1S 88 A1S H36 H36 H 0 1 N N N -22.875 16.631 -12.780 -2.806 6.540 1.425 H36 A1S 89 A1S H37 H37 H 0 1 N N N -23.960 18.260 -11.830 -5.040 2.917 2.631 H37 A1S 90 A1S H38 H38 H 0 1 N N N -25.897 17.201 -10.029 -7.111 3.802 0.928 H38 A1S 91 A1S H39 H39 H 0 1 N N N -24.847 18.637 -9.775 -5.885 2.976 -0.063 H39 A1S 92 A1S H40 H40 H 0 1 N N N -27.359 19.127 -9.805 -6.072 0.968 1.379 H40 A1S 93 A1S H41 H41 H 0 1 N N N -27.357 18.653 -11.538 -7.299 1.794 2.369 H41 A1S 94 A1S H42 H42 H 0 1 N N N -27.982 20.686 -12.059 -8.357 -0.461 1.340 H42 A1S 95 A1S H43 H43 H 0 1 N N N -25.863 22.754 -12.316 -10.429 0.424 -0.363 H43 A1S 96 A1S H44 H44 H 0 1 N N N -27.334 22.587 -13.333 -9.202 -0.402 -1.354 H44 A1S 97 A1S H45 H45 H 0 1 N N N -27.806 22.927 -10.385 -9.390 -2.410 0.088 H45 A1S 98 A1S H46 H46 H 0 1 N N N -27.137 24.359 -11.239 -10.616 -1.584 1.079 H46 A1S 99 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1S O5A P2A DOUB N N 1 A1S O4A P2A SING N N 2 A1S P2A O3A SING N N 3 A1S P2A O6A SING N N 4 A1S C5B C4B SING N N 5 A1S C5B O5B SING N N 6 A1S C4B O4B SING N N 7 A1S C4B C3B SING N N 8 A1S O3A P1A SING N N 9 A1S O8A P3B DOUB N N 10 A1S O3B C3B SING N N 11 A1S O3B P3B SING N N 12 A1S O2B C2B SING N N 13 A1S O4B C1B SING N N 14 A1S C3B C2B SING N N 15 A1S O6A CCP SING N N 16 A1S P3B O9A SING N N 17 A1S P3B O7A SING N N 18 A1S O5B P1A SING N N 19 A1S O2A P1A DOUB N N 20 A1S P1A O1A SING N N 21 A1S C1B C2B SING N N 22 A1S C1B N9A SING N N 23 A1S CCP CBP SING N N 24 A1S C5 C3 SING N N 25 A1S C4 C3 SING N N 26 A1S C3 C2 SING N N 27 A1S CEP CBP SING N N 28 A1S CBP CDP SING N N 29 A1S CBP CAP SING N N 30 A1S N9A C8A SING Y N 31 A1S N9A C4A SING Y N 32 A1S C8A N7A DOUB Y N 33 A1S C2 C1 SING N N 34 A1S CAP OAP SING N N 35 A1S CAP C9P SING N N 36 A1S C4A N3A DOUB Y N 37 A1S C4A C5A SING Y N 38 A1S N3A C2A SING Y N 39 A1S C1 S1P SING N N 40 A1S N7A C5A SING Y N 41 A1S O9P C9P DOUB N N 42 A1S C5A C6A DOUB Y N 43 A1S C9P N8P SING N N 44 A1S C2A N1A DOUB Y N 45 A1S C3P N4P SING N N 46 A1S C3P C2P SING N N 47 A1S S1P C2P SING N N 48 A1S N4P C5P SING N N 49 A1S N8P C7P SING N N 50 A1S C6A N1A SING Y N 51 A1S C6A N6A SING N N 52 A1S C5P O5P DOUB N N 53 A1S C5P C6P SING N N 54 A1S C6P C7P SING N N 55 A1S C1 H1 SING N N 56 A1S C1 H2 SING N N 57 A1S C2 H3 SING N N 58 A1S C2 H4 SING N N 59 A1S C3 H5 SING N N 60 A1S C4 H6 SING N N 61 A1S C4 H7 SING N N 62 A1S C4 H8 SING N N 63 A1S C5 H9 SING N N 64 A1S C5 H10 SING N N 65 A1S C5 H11 SING N N 66 A1S O7A H12 SING N N 67 A1S O9A H13 SING N N 68 A1S C3B H14 SING N N 69 A1S C2B H15 SING N N 70 A1S O2B H16 SING N N 71 A1S C1B H17 SING N N 72 A1S C8A H18 SING N N 73 A1S N6A H19 SING N N 74 A1S N6A H20 SING N N 75 A1S C2A H21 SING N N 76 A1S C4B H22 SING N N 77 A1S C5B H23 SING N N 78 A1S C5B H24 SING N N 79 A1S O1A H25 SING N N 80 A1S O4A H26 SING N N 81 A1S CCP H27 SING N N 82 A1S CCP H28 SING N N 83 A1S CDP H29 SING N N 84 A1S CDP H30 SING N N 85 A1S CDP H31 SING N N 86 A1S CEP H32 SING N N 87 A1S CEP H33 SING N N 88 A1S CEP H34 SING N N 89 A1S CAP H35 SING N N 90 A1S OAP H36 SING N N 91 A1S N8P H37 SING N N 92 A1S C7P H38 SING N N 93 A1S C7P H39 SING N N 94 A1S C6P H40 SING N N 95 A1S C6P H41 SING N N 96 A1S N4P H42 SING N N 97 A1S C3P H43 SING N N 98 A1S C3P H44 SING N N 99 A1S C2P H45 SING N N 100 A1S C2P H46 SING N N 101 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1S SMILES ACDLabs 12.01 "C(SCCNC(CCNC(C(C(COP(OP(OCC3C(OP(O)(O)=O)C(O)C(n1cnc2c(ncnc12)N)O3)(O)=O)(O)=O)(C)C)O)=O)=O)CC(C)C" A1S InChI InChI 1.03 "InChI=1S/C26H46N7O16P3S/c1-15(2)6-9-53-10-8-28-17(34)5-7-29-24(37)21(36)26(3,4)12-46-52(43,44)49-51(41,42)45-11-16-20(48-50(38,39)40)19(35)25(47-16)33-14-32-18-22(27)30-13-31-23(18)33/h13-16,19-21,25,35-36H,5-12H2,1-4H3,(H,28,34)(H,29,37)(H,41,42)(H,43,44)(H2,27,30,31)(H2,38,39,40)/t16-,19-,20-,21+,25-/m1/s1" A1S InChIKey InChI 1.03 LBQVQRQFDUVUCX-MJQNIGQHSA-N A1S SMILES_CANONICAL CACTVS 3.385 "CC(C)CCSCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" A1S SMILES CACTVS 3.385 "CC(C)CCSCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" A1S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)CCSCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" A1S SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)CCSCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1S "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-2,2-dimethyl-4-{[3-({2-[(3-methylbutyl)sulfanyl]ethyl}amino)-3-oxopropyl]amino}-4-oxobutyl dihydrogen diphosphate (non-preferred name)" A1S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-2,2-dimethyl-4-[[3-[2-(3-methylbutylsulfanyl)ethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1S "Create component" 2017-07-05 RCSB A1S "Initial release" 2017-08-23 RCSB A1S "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1S _pdbx_chem_comp_synonyms.name isopentyl-CoA _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##