data_A22 # _chem_comp.id A22 _chem_comp.name ;[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N10 O16 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2'-PHOSPHATE BIS(ADENOSINE)-5'-DIPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-10-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 756.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A22 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A22 P2D P2*A P 0 1 N N N 17.279 9.952 17.697 -3.169 -0.690 -4.227 P2D A22 1 A22 O11 O1PA O 0 1 N N N 18.069 10.805 18.807 -4.737 -0.340 -4.046 O11 A22 2 A22 O12 O2PA O 0 1 N N N 17.239 8.411 18.202 -3.184 -1.953 -5.236 O12 A22 3 A22 O13 O3PA O 0 1 N N N 15.930 10.498 17.465 -2.301 0.456 -4.659 O13 A22 4 A22 P1A P1A P 0 1 N N S 13.980 7.547 13.320 -3.208 3.260 2.461 P1A A22 5 A22 O14 O5PA O 0 1 N N N 13.749 7.656 14.785 -3.184 4.596 1.550 O14 A22 6 A22 O15 O6PA O 0 1 N N N 13.663 6.269 12.632 -2.840 3.469 3.901 O15 A22 7 A22 O5D O5*A O 0 1 N N N 15.505 7.935 12.983 -2.282 2.216 1.644 O5D A22 8 A22 C5D C5*A C 0 1 N N N 16.531 6.899 12.992 -2.577 1.974 0.279 C5D A22 9 A22 C4D C4*A C 0 1 N N R 17.851 7.350 13.677 -1.579 0.965 -0.273 C4D A22 10 A22 O4D O4*A O 0 1 N N N 18.380 8.512 12.974 -1.730 -0.273 0.460 O4D A22 11 A22 C3D C3*A C 0 1 N N R 17.659 7.802 15.138 -1.823 0.630 -1.741 C3D A22 12 A22 O3D O3*A O 0 1 N N N 18.707 7.217 15.919 -0.592 0.209 -2.327 O3D A22 13 A22 C2D C2*A C 0 1 N N R 17.800 9.339 15.086 -2.770 -0.551 -1.650 C2D A22 14 A22 O2D O2*A O 0 1 N N N 18.261 9.900 16.361 -2.758 -1.359 -2.809 O2D A22 15 A22 C1D C1*A C 0 1 N N R 18.854 9.440 13.991 -2.219 -1.287 -0.439 C1D A22 16 A22 N9A N9A N 0 1 Y N N 19.094 10.768 13.319 -3.202 -2.122 0.248 N9A A22 17 A22 C8A C8A C 0 1 Y N N 18.224 11.703 12.914 -3.417 -3.459 0.034 C8A A22 18 A22 N7A N7A N 0 1 Y N N 18.896 12.732 12.373 -4.371 -3.939 0.804 N7A A22 19 A22 C5A C5A C 0 1 Y N N 20.207 12.426 12.404 -4.794 -2.868 1.550 C5A A22 20 A22 C6A C6A C 0 1 Y N N 21.392 13.047 11.986 -5.769 -2.735 2.533 C6A A22 21 A22 N6A N6A N 0 1 N N N 21.406 14.247 11.388 -6.542 -3.840 2.931 N6A A22 22 A22 N1A N1A N 0 1 Y N N 22.554 12.389 12.193 -5.967 -1.524 3.107 N1A A22 23 A22 C2A C2A C 0 1 Y N N 22.606 11.219 12.794 -5.191 -0.497 2.682 C2A A22 24 A22 N3A N3A N 0 1 Y N N 21.516 10.591 13.194 -4.220 -0.501 1.743 N3A A22 25 A22 C4A C4A C 0 1 Y N N 20.315 11.169 12.998 -4.079 -1.727 1.219 C4A A22 26 A22 P1B P1B P 0 1 N N R 13.292 10.288 12.736 -6.146 3.289 2.624 P1B A22 27 A22 O16 O1PB O 0 1 N N N 14.454 10.563 13.612 -6.240 4.640 1.739 O16 A22 28 A22 O17 O2PB O 0 1 N N N 11.975 10.893 13.033 -6.338 3.500 4.098 O17 A22 29 A22 O18 O3PB O 0 1 N N N 13.082 8.685 12.587 -4.700 2.686 2.225 O18 A22 30 A22 O5E O5*B O 0 1 N N N 13.680 10.719 11.201 -7.210 2.282 1.938 O5E A22 31 A22 C5E C5*B C 0 1 N N N 13.955 9.745 10.213 -7.130 2.004 0.551 C5E A22 32 A22 C4E C4*B C 0 1 N N R 15.460 9.708 9.925 -8.524 1.708 0.025 C4E A22 33 A22 O4E O4*B O 0 1 N N N 15.997 8.340 9.974 -8.456 1.375 -1.371 O4E A22 34 A22 C3E C3*B C 0 1 N N S 15.525 10.118 8.457 -9.180 0.510 0.689 C3E A22 35 A22 O3E O3*B O 0 1 N N N 15.599 11.564 8.353 -9.747 0.839 1.939 O3E A22 36 A22 C2E C2*B C 0 1 N N R 16.807 9.426 7.972 -10.204 0.087 -0.348 C2E A22 37 A22 O2E O2*B O 0 1 N N N 17.869 10.391 8.059 -11.405 0.846 -0.225 O2E A22 38 A22 C1E C1*B C 0 1 N N R 17.043 8.241 8.949 -9.516 0.441 -1.668 C1E A22 39 A22 N9B N9B N 0 1 Y N N 16.997 6.838 8.340 -8.963 -0.718 -2.370 N9B A22 40 A22 C8B C8B C 0 1 Y N N 15.919 6.218 7.837 -7.722 -1.266 -2.174 C8B A22 41 A22 N7B N7B N 0 1 Y N N 16.261 4.997 7.411 -7.507 -2.303 -2.955 N7B A22 42 A22 C5B C5B C 0 1 Y N N 17.567 4.827 7.628 -8.657 -2.434 -3.691 C5B A22 43 A22 C6B C6B C 0 1 Y N N 18.479 3.785 7.389 -9.041 -3.336 -4.679 C6B A22 44 A22 N6B N6B N 0 1 N N N 18.127 2.621 6.819 -8.172 -4.359 -5.094 N6B A22 45 A22 N1B N1B N 0 1 Y N N 19.753 3.968 7.756 -10.269 -3.216 -5.238 N1B A22 46 A22 C2B C2B C 0 1 Y N N 20.147 5.108 8.318 -11.063 -2.211 -4.797 C2B A22 47 A22 N3B N3B N 0 1 Y N N 19.320 6.098 8.563 -10.804 -1.280 -3.852 N3B A22 48 A22 C4B C4B C 0 1 Y N N 18.024 5.995 8.228 -9.576 -1.458 -3.343 C4B A22 49 A22 H1PA H1PA H 0 0 N N N 18.225 10.263 19.572 -5.200 0.145 -4.761 H1PA A22 50 A22 H2PA H2PA H 0 0 N N N 17.231 7.831 17.450 -3.318 -1.793 -6.195 H2PA A22 51 A22 H5PA H5PA H 0 0 N N N 14.584 7.679 15.237 -2.402 5.187 1.592 H5PA A22 52 A22 HD1 1H*A H 0 1 N N N 16.138 6.030 13.540 -3.597 1.587 0.203 HD1 A22 53 A22 HD2 2H*A H 0 1 N N N 16.768 6.662 11.944 -2.510 2.919 -0.268 HD2 A22 54 A22 H4D H4*A H 0 1 N N N 18.518 6.476 13.650 -0.562 1.330 -0.099 H4D A22 55 A22 H3CA H3CA H 0 0 N N N 16.697 7.504 15.581 -2.209 1.461 -2.337 H3CA A22 56 A22 H3OA H3OA H 0 0 N N N 19.474 7.087 15.374 -0.823 -0.417 -3.030 H3OA A22 57 A22 H2D H2*A H 0 1 N N N 16.869 9.895 14.899 -3.794 -0.204 -1.468 H2D A22 58 A22 H1D H1*A H 0 1 N N N 19.823 9.240 14.471 -1.395 -1.962 -0.695 H1D A22 59 A22 H8A H8A H 0 1 N N N 17.150 11.639 13.008 -2.849 -4.026 -0.692 H8A A22 60 A22 H6A1 1H6A H 0 0 N N N 21.409 14.966 12.083 -6.351 -4.285 3.808 H6A1 A22 61 A22 H6A2 2H6A H 0 0 N N N 22.226 14.327 10.821 -7.211 -4.228 2.293 H6A2 A22 62 A22 H2A H2A H 0 1 N N N 23.568 10.760 12.965 -5.377 0.458 3.162 H2A A22 63 A22 H1PB H1PB H 0 0 N N N 15.242 10.622 13.085 -6.977 5.266 1.906 H1PB A22 64 A22 HE1 1H*B H 0 1 N N N 13.413 9.999 9.290 -6.704 2.873 0.041 HE1 A22 65 A22 HE2 2H*B H 0 1 N N N 13.630 8.758 10.575 -6.473 1.143 0.402 HE2 A22 66 A22 H4E H4*B H 0 1 N N N 16.017 10.327 10.644 -9.139 2.609 0.134 H4E A22 67 A22 H3CB H3CB H 0 0 N N N 14.648 9.830 7.859 -8.447 -0.294 0.830 H3CB A22 68 A22 H3OB H3OB H 0 0 N N N 15.615 11.944 9.223 -9.060 1.308 2.436 H3OB A22 69 A22 H2CB H2CB H 0 0 N N N 16.750 9.056 6.938 -10.482 -0.967 -0.259 H2CB A22 70 A22 H2OB H2OB H 0 0 N N N 18.176 10.604 7.186 -11.802 0.622 0.635 H2OB A22 71 A22 H1E H1*B H 0 1 N N N 18.071 8.341 9.327 -10.198 0.912 -2.383 H1E A22 72 A22 H8B H8B H 0 1 N N N 14.926 6.640 7.784 -7.024 -0.866 -1.450 H8B A22 73 A22 H6B1 1H6B H 0 0 N N N 18.040 2.746 5.831 -8.540 -5.147 -5.592 H6B1 A22 74 A22 H6B2 2H6B H 0 0 N N N 18.828 1.933 7.007 -7.211 -4.336 -4.807 H6B2 A22 75 A22 H2B H2B H 0 1 N N N 21.188 5.223 8.583 -12.038 -2.144 -5.267 H2B A22 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A22 P2D O2D SING N N 1 A22 P2D O13 DOUB N N 2 A22 P2D O12 SING N N 3 A22 P2D O11 SING N N 4 A22 O11 H1PA SING N N 5 A22 O12 H2PA SING N N 6 A22 P1A O18 SING N N 7 A22 P1A O15 DOUB N N 8 A22 P1A O5D SING N N 9 A22 P1A O14 SING N N 10 A22 O14 H5PA SING N N 11 A22 O5D C5D SING N N 12 A22 C5D C4D SING N N 13 A22 C5D HD1 SING N N 14 A22 C5D HD2 SING N N 15 A22 C4D O4D SING N N 16 A22 C4D C3D SING N N 17 A22 C4D H4D SING N N 18 A22 O4D C1D SING N N 19 A22 C3D C2D SING N N 20 A22 C3D O3D SING N N 21 A22 C3D H3CA SING N N 22 A22 O3D H3OA SING N N 23 A22 C2D C1D SING N N 24 A22 C2D O2D SING N N 25 A22 C2D H2D SING N N 26 A22 C1D N9A SING N N 27 A22 C1D H1D SING N N 28 A22 N9A C8A SING Y N 29 A22 N9A C4A SING Y N 30 A22 C8A N7A DOUB Y N 31 A22 C8A H8A SING N N 32 A22 N7A C5A SING Y N 33 A22 C5A C6A SING Y N 34 A22 C5A C4A DOUB Y N 35 A22 C6A N6A SING N N 36 A22 C6A N1A DOUB Y N 37 A22 N6A H6A1 SING N N 38 A22 N6A H6A2 SING N N 39 A22 N1A C2A SING Y N 40 A22 C2A N3A DOUB Y N 41 A22 C2A H2A SING N N 42 A22 N3A C4A SING Y N 43 A22 P1B O5E SING N N 44 A22 P1B O18 SING N N 45 A22 P1B O17 DOUB N N 46 A22 P1B O16 SING N N 47 A22 O16 H1PB SING N N 48 A22 O5E C5E SING N N 49 A22 C5E C4E SING N N 50 A22 C5E HE1 SING N N 51 A22 C5E HE2 SING N N 52 A22 C4E C3E SING N N 53 A22 C4E O4E SING N N 54 A22 C4E H4E SING N N 55 A22 O4E C1E SING N N 56 A22 C3E C2E SING N N 57 A22 C3E O3E SING N N 58 A22 C3E H3CB SING N N 59 A22 O3E H3OB SING N N 60 A22 C2E O2E SING N N 61 A22 C2E C1E SING N N 62 A22 C2E H2CB SING N N 63 A22 O2E H2OB SING N N 64 A22 C1E N9B SING N N 65 A22 C1E H1E SING N N 66 A22 N9B C8B SING Y N 67 A22 N9B C4B SING Y N 68 A22 C8B N7B DOUB Y N 69 A22 C8B H8B SING N N 70 A22 N7B C5B SING Y N 71 A22 C5B C6B DOUB Y N 72 A22 C5B C4B SING Y N 73 A22 C6B N6B SING N N 74 A22 C6B N1B SING Y N 75 A22 N6B H6B1 SING N N 76 A22 N6B H6B2 SING N N 77 A22 N1B C2B DOUB Y N 78 A22 C2B N3B SING Y N 79 A22 C2B H2B SING N N 80 A22 N3B C4B DOUB Y N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A22 SMILES ACDLabs 10.04 "O=P(O)(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(OP(=O)(O)O)C6O" A22 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O[P](O)(O)=O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" A22 SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O[P](O)(O)=O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" A22 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)OP(=O)(O)O)O)O)O)N" A22 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)OP(=O)(O)O)O)O)O)N" A22 InChI InChI 1.03 "InChI=1S/C20H27N10O16P3/c21-15-9-17(25-3-23-15)29(5-27-9)19-13(33)11(31)7(43-19)1-41-48(37,38)46-49(39,40)42-2-8-12(32)14(45-47(34,35)36)20(44-8)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-33H,1-2H2,(H,37,38)(H,39,40)(H2,21,23,25)(H2,22,24,26)(H2,34,35,36)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1" A22 InChIKey InChI 1.03 JRSFRHPGKHPNEL-XPWFQUROSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A22 "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" A22 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A22 "Create component" 2006-10-25 RCSB A22 "Modify descriptor" 2011-06-04 RCSB A22 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A22 _pdbx_chem_comp_synonyms.name "2'-PHOSPHATE BIS(ADENOSINE)-5'-DIPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##