data_A23 # _chem_comp.id A23 _chem_comp.name ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 N5 O9 P2" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-10-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.186 _chem_comp.one_letter_code A _chem_comp.three_letter_code A23 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D4R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A23 PC PC P 0 1 N N S 13.205 -16.575 -50.946 -3.562 0.129 0.153 PC A23 1 A23 O1C O1C O 0 1 N N N 11.725 -16.500 -50.780 -4.605 -0.909 0.296 O1C A23 2 A23 O2C O2C O 0 1 N N N 13.867 -15.960 -52.124 -4.158 1.618 0.298 O2C A23 3 A23 P P P 0 1 N N N 16.904 -21.053 -46.210 1.660 -0.079 -4.784 P A23 4 A23 OP1 O1P O 0 1 N N N 18.115 -20.395 -46.775 2.154 1.297 -4.556 OP1 A23 5 A23 OP2 O2P O 0 1 N N N 16.926 -22.520 -45.963 2.846 -0.980 -5.397 OP2 A23 6 A23 OP3 O3P O 0 1 N Y N 16.530 -20.308 -44.829 0.425 -0.042 -5.816 OP3 A23 7 A23 "O5'" O5* O 0 1 N N N 15.662 -20.739 -47.154 1.173 -0.713 -3.387 "O5'" A23 8 A23 "C5'" C5* C 0 1 N N N 15.840 -20.024 -48.367 0.126 0.126 -2.895 "C5'" A23 9 A23 "C4'" C4* C 0 1 N N R 14.520 -19.493 -48.898 -0.384 -0.423 -1.562 "C4'" A23 10 A23 "O4'" O4* O 0 1 N N N 13.655 -19.066 -47.806 0.676 -0.428 -0.581 "O4'" A23 11 A23 "C3'" C3* C 0 1 N N R 14.720 -18.272 -49.778 -1.463 0.510 -0.970 "C3'" A23 12 A23 "O3'" O3* O 0 1 N N N 13.741 -18.066 -50.785 -2.761 -0.040 -1.258 "O3'" A23 13 A23 "C2'" C2* C 0 1 N N R 14.534 -17.084 -48.810 -1.200 0.474 0.551 "C2'" A23 14 A23 "O2'" O2* O 0 1 N N N 13.883 -16.095 -49.589 -2.346 -0.115 1.213 "O2'" A23 15 A23 "C1'" C1* C 0 1 N N R 13.530 -17.653 -47.807 0.009 -0.474 0.699 "C1'" A23 16 A23 N9 N9 N 0 1 Y N N 13.725 -17.165 -46.437 0.904 0.000 1.757 N9 A23 17 A23 C8 C8 C 0 1 Y N N 14.661 -17.582 -45.520 1.935 0.880 1.607 C8 A23 18 A23 N7 N7 N 0 1 Y N N 14.590 -16.960 -44.368 2.519 1.080 2.753 N7 A23 19 A23 C5 C5 C 0 1 Y N N 13.541 -16.066 -44.533 1.898 0.348 3.709 C5 A23 20 A23 C6 C6 C 0 1 Y N N 12.968 -15.105 -43.670 2.088 0.161 5.089 C6 A23 21 A23 N6 N6 N 0 1 N N N 13.410 -14.866 -42.422 3.100 0.825 5.761 N6 A23 22 A23 N1 N1 N 0 1 Y N N 11.923 -14.383 -44.140 1.270 -0.664 5.734 N1 A23 23 A23 C2 C2 C 0 1 Y N N 11.501 -14.611 -45.393 0.303 -1.301 5.101 C2 A23 24 A23 N3 N3 N 0 1 Y N N 11.965 -15.476 -46.302 0.091 -1.161 3.809 N3 A23 25 A23 C4 C4 C 0 1 Y N N 12.996 -16.182 -45.802 0.858 -0.357 3.081 C4 A23 26 A23 HOC2 2HOC H 0 0 N N N 14.809 -16.007 -52.229 -4.617 1.654 1.148 HOC2 A23 27 A23 HOP2 2HOP H 0 0 N N N 16.153 -22.939 -45.602 3.108 -0.566 -6.231 HOP2 A23 28 A23 HOP3 3HOP H 0 0 N N N 15.757 -20.727 -44.468 0.134 -0.956 -5.937 HOP3 A23 29 A23 "H5'" 1H5* H 0 1 N N N 16.591 -19.208 -48.253 -0.690 0.147 -3.616 "H5'" A23 30 A23 "H5''" 2H5* H 0 0 N N N 16.368 -20.641 -49.130 0.509 1.136 -2.749 "H5''" A23 31 A23 "H4'" H4* H 0 1 N N N 14.064 -20.328 -49.478 -0.783 -1.428 -1.694 "H4'" A23 32 A23 "H3'" H3* H 0 1 N N N 15.700 -18.387 -50.295 -1.369 1.522 -1.365 "H3'" A23 33 A23 "H2'" H2* H 0 1 N N N 15.452 -16.674 -48.329 -0.976 1.461 0.957 "H2'" A23 34 A23 "H1'" H1* H 0 1 N N N 12.516 -17.316 -48.128 -0.327 -1.488 0.915 "H1'" A23 35 A23 H8 H8 H 0 1 N N N 15.418 -18.363 -45.696 2.224 1.342 0.675 H8 A23 36 A23 HN61 1HN6 H 0 0 N N N 12.996 -14.172 -41.799 3.218 0.690 6.714 HN61 A23 37 A23 HN62 2HN6 H 0 0 N N N 14.405 -14.654 -42.490 3.692 1.421 5.278 HN62 A23 38 A23 H2 H2 H 0 1 N N N 10.646 -13.996 -45.724 -0.338 -1.962 5.664 H2 A23 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A23 PC O1C DOUB N N 1 A23 PC O2C SING N N 2 A23 PC "O3'" SING N N 3 A23 PC "O2'" SING N N 4 A23 O2C HOC2 SING N N 5 A23 P OP1 DOUB N N 6 A23 P OP2 SING N N 7 A23 P OP3 SING N N 8 A23 P "O5'" SING N N 9 A23 OP2 HOP2 SING N N 10 A23 OP3 HOP3 SING N N 11 A23 "O5'" "C5'" SING N N 12 A23 "C5'" "C4'" SING N N 13 A23 "C5'" "H5'" SING N N 14 A23 "C5'" "H5''" SING N N 15 A23 "C4'" "O4'" SING N N 16 A23 "C4'" "C3'" SING N N 17 A23 "C4'" "H4'" SING N N 18 A23 "O4'" "C1'" SING N N 19 A23 "C3'" "O3'" SING N N 20 A23 "C3'" "C2'" SING N N 21 A23 "C3'" "H3'" SING N N 22 A23 "C2'" "O2'" SING N N 23 A23 "C2'" "C1'" SING N N 24 A23 "C2'" "H2'" SING N N 25 A23 "C1'" N9 SING N N 26 A23 "C1'" "H1'" SING N N 27 A23 N9 C8 SING Y N 28 A23 N9 C4 SING Y N 29 A23 C8 N7 DOUB Y N 30 A23 C8 H8 SING N N 31 A23 N7 C5 SING Y N 32 A23 C5 C6 SING Y N 33 A23 C5 C4 DOUB Y N 34 A23 C6 N6 SING N N 35 A23 C6 N1 DOUB Y N 36 A23 N6 HN61 SING N N 37 A23 N6 HN62 SING N N 38 A23 N1 C2 SING Y N 39 A23 C2 N3 DOUB Y N 40 A23 C2 H2 SING N N 41 A23 N3 C4 SING Y N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A23 SMILES ACDLabs 10.04 "O=P1(OC2C(OC(C2O1)COP(=O)(O)O)n3c4ncnc(N)c4nc3)O" A23 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@H]4O[P@@](O)(=O)O[C@@H]34" A23 SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH]4O[P](O)(=O)O[CH]34" A23 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O)O)O[P@@](=O)(O4)O)N" A23 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)O)OP(=O)(O4)O)N" A23 InChI InChI 1.03 "InChI=1S/C10H13N5O9P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7-6(23-26(19,20)24-7)4(22-10)1-21-25(16,17)18/h2-4,6-7,10H,1H2,(H,19,20)(H2,11,12,13)(H2,16,17,18)/t4-,6-,7-,10-/m1/s1" A23 InChIKey InChI 1.03 HJMBCNJTGVMDOA-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A23 "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,3aR,4R,6R,6aR)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl dihydrogen phosphate" A23 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,3S,5R,6R,8R)-6-(6-aminopurin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-8-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A23 "Create component" 1999-10-08 RCSB A23 "Modify descriptor" 2011-06-04 RCSB #