data_A24 # _chem_comp.id A24 _chem_comp.name "(3-NITRO-5-(2-MORPHOLIN-4-YL-ETHYLAMINOCARBONYL)PHENYL)-GALACTOPYRANOSIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N3 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms BMSC-0011 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-08-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A24 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JR0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A24 C1 C1 C 0 1 N N R -10.899 19.796 2.118 -3.220 0.883 0.944 C1 A24 1 A24 O1 O1 O 0 1 N N N -12.293 20.093 2.103 -3.330 -0.541 0.917 O1 A24 2 A24 C2 C2 C 0 1 N N R -10.781 18.572 2.987 -4.553 1.487 1.394 C2 A24 3 A24 O2 O2 O 0 1 N N N -11.591 17.499 2.457 -4.863 1.030 2.712 O2 A24 4 A24 C3 C3 C 0 1 N N S -11.223 18.878 4.401 -5.654 1.046 0.423 C3 A24 5 A24 O3 O3 O 0 1 N N N -10.863 17.733 5.176 -6.873 1.719 0.743 O3 A24 6 A24 C4 C4 C 0 1 N N R -10.475 20.120 4.936 -5.222 1.407 -1.003 C4 A24 7 A24 O4 O4 O 0 1 N N N -9.066 19.783 5.013 -5.167 2.829 -1.140 O4 A24 8 A24 C5 C5 C 0 1 N N R -10.665 21.290 3.994 -3.840 0.808 -1.272 C5 A24 9 A24 O5 O5 O 0 1 N N N -10.231 20.953 2.667 -2.891 1.358 -0.360 O5 A24 10 A24 C6 C6 C 0 1 N N N -9.847 22.527 4.385 -3.415 1.133 -2.705 C6 A24 11 A24 O6 O6 O 0 1 N N N -10.110 23.610 3.509 -2.181 0.475 -2.997 O6 A24 12 A24 "C1'" "C1'" C 0 1 Y N N -12.674 21.132 1.222 -2.090 -1.026 0.646 "C1'" A24 13 A24 "C2'" "C2'" C 0 1 Y N N -12.956 20.768 -0.077 -1.906 -2.387 0.445 "C2'" A24 14 A24 "C3'" "C3'" C 0 1 Y N N -13.355 21.802 -0.932 -0.648 -2.886 0.163 "C3'" A24 15 A24 "C4'" "C4'" C 0 1 Y N N -13.448 23.084 -0.434 0.436 -2.035 0.090 "C4'" A24 16 A24 "C5'" "C5'" C 0 1 Y N N -13.126 23.449 0.853 0.261 -0.665 0.296 "C5'" A24 17 A24 "C6'" "C6'" C 0 1 Y N N -12.786 22.414 1.733 -1.010 -0.163 0.575 "C6'" A24 18 A24 "N1'" "N1'" N 1 1 N N N -13.617 21.353 -2.247 -0.461 -4.338 -0.055 "N1'" A24 19 A24 "O1'" "O1'" O -1 1 N N N -14.032 22.200 -3.082 0.648 -4.780 -0.299 "O1'" A24 20 A24 "O2'" "O2'" O 0 1 N N N -13.370 20.103 -2.350 -1.416 -5.091 0.009 "O2'" A24 21 A24 "C7'" "C7'" C 0 1 N N N -13.097 24.769 1.376 1.420 0.250 0.218 "C7'" A24 22 A24 "O3'" "O3'" O 0 1 N N N -12.835 24.938 2.650 1.266 1.443 0.397 "O3'" A24 23 A24 "N2'" "N2'" N 0 1 N N N -13.346 25.843 0.635 2.647 -0.237 -0.052 "N2'" A24 24 A24 O1B O1* O 0 1 N N N -10.645 25.163 -4.638 8.684 1.482 0.768 O1B A24 25 A24 C2B C2* C 0 1 N N N -12.044 25.315 -4.762 8.658 0.812 -0.492 C2B A24 26 A24 C3B C3* C 0 1 N N N -12.557 26.535 -3.943 7.411 -0.067 -0.584 C3B A24 27 A24 "N4'" N4* N 0 1 N N N -11.902 26.722 -2.604 6.210 0.776 -0.523 "N4'" A24 28 A24 C5B C5* C 0 1 N N N -11.152 25.468 -2.226 6.266 1.497 0.756 C5B A24 29 A24 C6B C6* C 0 1 N N N -10.202 24.971 -3.305 7.542 2.337 0.814 C6B A24 30 A24 C7B C7* C 0 1 N N N -12.700 27.253 -1.463 5.059 -0.133 -0.446 C7B A24 31 A24 "C8'" C8* C 0 1 N N N -13.598 26.340 -0.686 3.795 0.670 -0.129 "C8'" A24 32 A24 H11 1H1 H 0 1 N N N -10.446 19.592 1.137 -2.436 1.173 1.644 H11 A24 33 A24 H21 1H2 H 0 1 N N N -9.725 18.263 2.997 -4.479 2.575 1.393 H21 A24 34 A24 HO21 1HO2 H 0 0 N N N -11.769 17.660 1.538 -4.143 1.323 3.287 HO21 A24 35 A24 H31 1H3 H 0 1 N N N -12.302 19.088 4.449 -5.800 -0.031 0.501 H31 A24 36 A24 HO31 1HO3 H 0 0 N N N -10.783 16.977 4.606 -7.098 1.473 1.651 HO31 A24 37 A24 H41 1H4 H 0 1 N N N -10.866 20.404 5.924 -5.940 1.000 -1.715 H41 A24 38 A24 HO41 1HO4 H 0 0 N N N -8.709 19.709 4.136 -6.055 3.162 -0.956 HO41 A24 39 A24 H51 1H5 H 0 1 N N N -11.741 21.515 4.046 -3.882 -0.273 -1.143 H51 A24 40 A24 H61 1H6 H 0 1 N N N -8.778 22.275 4.320 -3.286 2.210 -2.811 H61 A24 41 A24 H62 2H6 H 0 1 N N N -10.116 22.823 5.410 -4.183 0.789 -3.399 H62 A24 42 A24 HO1 1HO H 0 1 N N N -10.169 24.415 4.009 -1.949 0.705 -3.907 HO1 A24 43 A24 "H2'1" "1H2'" H 0 0 N N N -12.874 19.746 -0.415 -2.751 -3.058 0.501 "H2'1" A24 44 A24 "H4'1" "1H4'" H 0 0 N N N -13.799 23.857 -1.102 1.418 -2.428 -0.127 "H4'1" A24 45 A24 "H6'1" "1H6'" H 0 0 N N N -12.616 22.610 2.781 -1.151 0.896 0.735 "H6'1" A24 46 A24 HN21 1HN2 H 0 0 N N N -13.366 26.629 1.253 2.770 -1.189 -0.195 HN21 A24 47 A24 H2A1 1H2* H 0 0 N N N -12.528 24.407 -4.373 9.548 0.191 -0.591 H2A1 A24 48 A24 "H2'2" 2H2* H 0 0 N N N -12.292 25.470 -5.823 8.642 1.550 -1.295 "H2'2" A24 49 A24 "H3'1" 1H3* H 0 0 N N N -13.623 26.349 -3.744 7.402 -0.773 0.247 "H3'1" A24 50 A24 "H3'2" 2H3* H 0 0 N N N -12.366 27.440 -4.538 7.422 -0.616 -1.526 "H3'2" A24 51 A24 "H5'1" 1H5* H 0 0 N N N -11.902 24.679 -2.068 5.397 2.149 0.843 "H5'1" A24 52 A24 "H5'2" 2H5* H 0 0 N N N -10.560 25.684 -1.324 6.265 0.780 1.577 "H5'2" A24 53 A24 H6A1 1H6* H 0 0 N N N -9.280 25.562 -3.199 7.556 2.911 1.741 H6A1 A24 54 A24 "H6'2" 2H6* H 0 0 N N N -10.064 23.890 -3.153 7.565 3.020 -0.035 "H6'2" A24 55 A24 "H7'1" 1H7* H 0 0 N N N -13.397 27.957 -1.940 5.229 -0.868 0.341 "H7'1" A24 56 A24 "H7'2" 2H7* H 0 0 N N N -11.972 27.651 -0.741 4.935 -0.644 -1.400 "H7'2" A24 57 A24 "H8'1" 1H8* H 0 0 N N N -14.447 27.011 -0.490 3.625 1.405 -0.916 "H8'1" A24 58 A24 "H8'2" 2H8* H 0 0 N N N -13.673 25.436 -1.308 3.919 1.181 0.825 "H8'2" A24 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A24 C1 O1 SING N N 1 A24 C1 C2 SING N N 2 A24 C1 O5 SING N N 3 A24 C1 H11 SING N N 4 A24 O1 "C1'" SING N N 5 A24 C2 O2 SING N N 6 A24 C2 C3 SING N N 7 A24 C2 H21 SING N N 8 A24 O2 HO21 SING N N 9 A24 C3 O3 SING N N 10 A24 C3 C4 SING N N 11 A24 C3 H31 SING N N 12 A24 O3 HO31 SING N N 13 A24 C4 O4 SING N N 14 A24 C4 C5 SING N N 15 A24 C4 H41 SING N N 16 A24 O4 HO41 SING N N 17 A24 C5 O5 SING N N 18 A24 C5 C6 SING N N 19 A24 C5 H51 SING N N 20 A24 C6 O6 SING N N 21 A24 C6 H61 SING N N 22 A24 C6 H62 SING N N 23 A24 O6 HO1 SING N N 24 A24 "C1'" "C2'" DOUB Y N 25 A24 "C1'" "C6'" SING Y N 26 A24 "C2'" "C3'" SING Y N 27 A24 "C2'" "H2'1" SING N N 28 A24 "C3'" "C4'" DOUB Y N 29 A24 "C3'" "N1'" SING N N 30 A24 "C4'" "C5'" SING Y N 31 A24 "C4'" "H4'1" SING N N 32 A24 "C5'" "C6'" DOUB Y N 33 A24 "C5'" "C7'" SING N N 34 A24 "C6'" "H6'1" SING N N 35 A24 "N1'" "O1'" SING N N 36 A24 "N1'" "O2'" DOUB N N 37 A24 "C7'" "O3'" DOUB N N 38 A24 "C7'" "N2'" SING N N 39 A24 "N2'" "C8'" SING N N 40 A24 "N2'" HN21 SING N N 41 A24 O1B C2B SING N N 42 A24 O1B C6B SING N N 43 A24 C2B C3B SING N N 44 A24 C2B H2A1 SING N N 45 A24 C2B "H2'2" SING N N 46 A24 C3B "N4'" SING N N 47 A24 C3B "H3'1" SING N N 48 A24 C3B "H3'2" SING N N 49 A24 "N4'" C5B SING N N 50 A24 "N4'" C7B SING N N 51 A24 C5B C6B SING N N 52 A24 C5B "H5'1" SING N N 53 A24 C5B "H5'2" SING N N 54 A24 C6B H6A1 SING N N 55 A24 C6B "H6'2" SING N N 56 A24 C7B "C8'" SING N N 57 A24 C7B "H7'1" SING N N 58 A24 C7B "H7'2" SING N N 59 A24 "C8'" "H8'1" SING N N 60 A24 "C8'" "H8'2" SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A24 SMILES ACDLabs 10.04 "[O-][N+](=O)c3cc(OC1OC(C(O)C(O)C1O)CO)cc(C(=O)NCCN2CCOCC2)c3" A24 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](Oc2cc(cc(c2)[N+]([O-])=O)C(=O)NCCN3CCOCC3)[C@H](O)[C@@H](O)[C@H]1O" A24 SMILES CACTVS 3.341 "OC[CH]1O[CH](Oc2cc(cc(c2)[N+]([O-])=O)C(=O)NCCN3CCOCC3)[CH](O)[CH](O)[CH]1O" A24 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)C(=O)NCCN3CCOCC3" A24 SMILES "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O)C(=O)NCCN3CCOCC3" A24 InChI InChI 1.03 "InChI=1S/C19H27N3O10/c23-10-14-15(24)16(25)17(26)19(32-14)31-13-8-11(7-12(9-13)22(28)29)18(27)20-1-2-21-3-5-30-6-4-21/h7-9,14-17,19,23-26H,1-6,10H2,(H,20,27)/t14-,15+,16+,17-,19+/m1/s1" A24 InChIKey InChI 1.03 WUPHPSHNWMGIKP-RDHIYWLCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A24 "SYSTEMATIC NAME" ACDLabs 10.04 "3-(alpha-D-galactopyranosyloxy)-N-(2-morpholin-4-ylethyl)-5-nitrobenzamide" A24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-(2-morpholin-4-ylethyl)-3-nitro-5-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A24 "Create component" 2001-08-16 RCSB A24 "Modify descriptor" 2011-06-04 RCSB A24 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A24 _pdbx_chem_comp_synonyms.name BMSC-0011 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##