data_A2H # _chem_comp.id A2H _chem_comp.name "4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 B Cl N6 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -3 _chem_comp.pdbx_initial_date 2015-02-03 _chem_comp.pdbx_modified_date 2016-02-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 567.661 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A2H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5AGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A2H B B B -1 1 N N N 6.434 25.241 11.234 1.620 -0.267 0.510 B A2H 1 A2H P P P 0 1 N N N -0.325 26.315 10.052 -4.201 -4.427 -0.166 P A2H 2 A2H CL CL CL 0 0 N N N 10.930 27.047 9.714 6.551 -1.198 0.710 CL A2H 3 A2H N1 N1 N 0 1 Y N N 1.165 24.568 18.022 -1.830 5.997 -0.250 N1 A2H 4 A2H O1 O1 O 0 1 N N N 7.516 24.286 11.231 2.132 -0.193 1.779 O1 A2H 5 A2H C2 C2 C 0 1 Y N N 1.845 25.638 17.606 -0.923 5.202 -0.788 C2 A2H 6 A2H N3 N3 N 0 1 Y N N 2.476 25.679 16.426 -0.979 3.891 -0.680 N3 A2H 7 A2H C4 C4 C 0 1 Y N N 2.404 24.586 15.642 -1.970 3.308 -0.013 C4 A2H 8 A2H C5 C5 C 0 1 Y N N 1.705 23.454 16.032 -2.960 4.111 0.579 C5 A2H 9 A2H C6 C6 C 0 1 Y N N 1.066 23.446 17.273 -2.856 5.505 0.436 C6 A2H 10 A2H N6 N6 N 0 1 N N N 0.369 22.373 17.709 -3.801 6.346 0.998 N6 A2H 11 A2H N7 N7 N 0 1 Y N N 1.837 22.530 15.050 -3.838 3.278 1.187 N7 A2H 12 A2H C8 C8 C 0 1 Y N N 2.585 23.107 14.089 -3.459 2.045 1.011 C8 A2H 13 A2H N9 N9 N 0 1 Y N N 2.929 24.360 14.443 -2.312 2.011 0.276 N9 A2H 14 A2H "C1'" "C1'" C 0 1 N N R 3.783 25.328 13.705 -1.578 0.810 -0.130 "C1'" A2H 15 A2H C10 C10 C 0 1 N N S 8.644 25.126 11.140 3.418 -0.837 1.724 C10 A2H 16 A2H C11 C11 C 0 1 Y N N 8.356 26.369 10.429 3.932 -0.654 0.316 C11 A2H 17 A2H C12 C12 C 0 1 Y N N 7.003 26.505 10.628 2.834 -0.304 -0.458 C12 A2H 18 A2H C13 C13 C 0 1 Y N N 9.191 27.319 9.899 5.179 -0.765 -0.261 C13 A2H 19 A2H C14 C14 C 0 1 Y N N 8.622 28.487 9.428 5.336 -0.530 -1.617 C14 A2H 20 A2H C15 C15 C 0 1 Y N N 7.254 28.656 9.553 4.245 -0.186 -2.392 C15 A2H 21 A2H C16 C16 C 0 1 Y N N 6.429 27.679 10.146 2.989 -0.073 -1.813 C16 A2H 22 A2H C17 C17 C 0 1 N N N 9.625 25.155 12.258 4.376 -0.182 2.722 C17 A2H 23 A2H N18 N18 N 0 1 N N N 8.845 25.816 13.319 3.910 -0.441 4.091 N18 A2H 24 A2H O19 O19 O 0 1 N N N 5.083 27.860 10.252 1.915 0.265 -2.574 O19 A2H 25 A2H O1P O1P O 0 1 N N N -1.004 25.067 10.498 -5.119 -4.643 -1.416 O1P A2H 26 A2H "C2'" "C2'" C 0 1 N N R 4.828 24.582 12.894 -0.446 0.508 0.874 "C2'" A2H 27 A2H "O2'" "O2'" O 0 1 N N N 5.969 25.386 12.612 0.820 0.817 0.249 "O2'" A2H 28 A2H C20 C20 C 0 1 N N N 4.460 29.091 9.852 2.150 0.489 -3.965 C20 A2H 29 A2H C21 C21 C 0 1 N N N 2.977 29.003 10.096 0.834 0.856 -4.653 C21 A2H 30 A2H O2P O2P O -1 1 N N N 0.174 26.265 8.629 -5.091 -4.170 1.098 O2P A2H 31 A2H "C3'" "C3'" C 0 1 N N S 4.212 24.380 11.536 -0.427 -1.048 0.956 "C3'" A2H 32 A2H "O3'" "O3'" O 0 1 N N N 5.304 24.583 10.648 0.846 -1.392 0.366 "O3'" A2H 33 A2H O3P O3P O -1 1 N N N -0.976 27.616 10.449 -3.323 -5.705 0.065 O3P A2H 34 A2H "C4'" "C4'" C 0 1 N N R 3.169 25.496 11.435 -1.551 -1.481 -0.010 "C4'" A2H 35 A2H "O4'" "O4'" O 0 1 N N N 3.060 26.086 12.740 -2.441 -0.346 -0.079 "O4'" A2H 36 A2H "C5'" "C5'" C 0 1 N N N 1.765 25.062 11.035 -2.288 -2.702 0.544 "C5'" A2H 37 A2H "O5'" "O5'" O 0 1 N N N 1.017 26.273 10.951 -3.244 -3.157 -0.416 "O5'" A2H 38 A2H H2 H2 H 0 1 N N N 1.888 26.506 18.247 -0.105 5.644 -1.338 H2 A2H 39 A2H HN6 HN6 H 0 1 N N N -0.016 22.569 18.611 -3.718 7.307 0.892 HN6 A2H 40 A2H HN6A HN6A H 0 0 N N N -0.371 22.173 17.067 -4.546 5.975 1.496 HN6A A2H 41 A2H H8 H8 H 0 1 N N N 2.869 22.630 13.163 -3.978 1.178 1.391 H8 A2H 42 A2H "H1'" "H1'" H 0 1 N N N 4.288 25.995 14.420 -1.170 0.937 -1.133 "H1'" A2H 43 A2H H10 H10 H 0 1 N N N 9.234 24.595 10.378 3.314 -1.899 1.949 H10 A2H 44 A2H H14 H14 H 0 1 N N N 9.232 29.252 8.972 6.313 -0.616 -2.069 H14 A2H 45 A2H H15 H15 H 0 1 N N N 6.804 29.566 9.184 4.370 -0.005 -3.450 H15 A2H 46 A2H H17 H17 H 0 1 N N N 9.926 24.139 12.554 5.375 -0.598 2.593 H17 A2H 47 A2H H17A H17A H 0 0 N N N 10.518 25.740 11.993 4.404 0.893 2.545 H17A A2H 48 A2H HN18 HN18 H 0 0 N N N 9.405 25.898 14.143 4.526 -0.019 4.768 HN18 A2H 49 A2H HN1A HN1A H 0 0 N N N 8.569 26.727 13.012 2.961 -0.123 4.216 HN1A A2H 50 A2H "H2'" "H2'" H 0 1 N N N 5.089 23.623 13.365 -0.582 1.002 1.836 "H2'" A2H 51 A2H H20 H20 H 0 1 N N N 4.880 29.922 10.438 2.863 1.304 -4.087 H20 A2H 52 A2H H20A H20A H 0 0 N N N 4.646 29.266 8.782 2.555 -0.417 -4.416 H20A A2H 53 A2H H21 H21 H 0 1 N N N 2.498 29.945 9.790 0.121 0.041 -4.532 H21 A2H 54 A2H H21A H21A H 0 0 N N N 2.558 28.172 9.510 0.429 1.762 -4.202 H21A A2H 55 A2H H21B H21B H 0 0 N N N 2.791 28.828 11.166 1.013 1.027 -5.714 H21B A2H 56 A2H "H3'" "H3'" H 0 1 N N N 3.751 23.386 11.438 -0.548 -1.430 1.970 "H3'" A2H 57 A2H "H4'" "H4'" H 0 1 N N N 3.526 26.246 10.714 -1.139 -1.700 -0.996 "H4'" A2H 58 A2H "H5'" "H5'" H 0 1 N N N 1.781 24.549 10.062 -1.571 -3.497 0.748 "H5'" A2H 59 A2H "H5'A" "H5'A" H 0 0 N N N 1.335 24.393 11.795 -2.800 -2.429 1.466 "H5'A" A2H 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2H B O1 SING N N 1 A2H B C12 SING N N 2 A2H B "O2'" SING N N 3 A2H B "O3'" SING N N 4 A2H P O1P DOUB N N 5 A2H P O2P SING N N 6 A2H P O3P SING N N 7 A2H P "O5'" SING N N 8 A2H CL C13 SING N N 9 A2H N1 C2 DOUB Y N 10 A2H N1 C6 SING Y N 11 A2H O1 C10 SING N N 12 A2H C2 N3 SING Y N 13 A2H N3 C4 DOUB Y N 14 A2H C4 C5 SING Y N 15 A2H C4 N9 SING Y N 16 A2H C5 C6 DOUB Y N 17 A2H C5 N7 SING Y N 18 A2H C6 N6 SING N N 19 A2H N7 C8 DOUB Y N 20 A2H C8 N9 SING Y N 21 A2H N9 "C1'" SING N N 22 A2H "C1'" "C2'" SING N N 23 A2H "C1'" "O4'" SING N N 24 A2H C10 C11 SING N N 25 A2H C10 C17 SING N N 26 A2H C11 C12 DOUB Y N 27 A2H C11 C13 SING Y N 28 A2H C12 C16 SING Y N 29 A2H C13 C14 DOUB Y N 30 A2H C14 C15 SING Y N 31 A2H C15 C16 DOUB Y N 32 A2H C16 O19 SING N N 33 A2H C17 N18 SING N N 34 A2H O19 C20 SING N N 35 A2H "C2'" "O2'" SING N N 36 A2H "C2'" "C3'" SING N N 37 A2H C20 C21 SING N N 38 A2H "C3'" "O3'" SING N N 39 A2H "C3'" "C4'" SING N N 40 A2H "C4'" "O4'" SING N N 41 A2H "C4'" "C5'" SING N N 42 A2H "C5'" "O5'" SING N N 43 A2H C2 H2 SING N N 44 A2H N6 HN6 SING N N 45 A2H N6 HN6A SING N N 46 A2H C8 H8 SING N N 47 A2H "C1'" "H1'" SING N N 48 A2H C10 H10 SING N N 49 A2H C14 H14 SING N N 50 A2H C15 H15 SING N N 51 A2H C17 H17 SING N N 52 A2H C17 H17A SING N N 53 A2H N18 HN18 SING N N 54 A2H N18 HN1A SING N N 55 A2H "C2'" "H2'" SING N N 56 A2H C20 H20 SING N N 57 A2H C20 H20A SING N N 58 A2H C21 H21 SING N N 59 A2H C21 H21A SING N N 60 A2H C21 H21B SING N N 61 A2H "C3'" "H3'" SING N N 62 A2H "C4'" "H4'" SING N N 63 A2H "C5'" "H5'" SING N N 64 A2H "C5'" "H5'A" SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A2H InChI InChI 1.03 "InChI=1S/C20H24BClN6O9P/c1-2-32-10-4-3-9(22)13-11(5-23)35-21(14(10)13)36-16-12(6-33-38(29,30)31)34-20(17(16)37-21)28-8-27-15-18(24)25-7-26-19(15)28/h3-4,7-8,11-12,16-17,20H,2,5-6,23H2,1H3,(H2,24,25,26)(H2,29,30,31)/q-1/p-2/t11-,12-,16-,17-,20-,21+/m1/s1" A2H InChIKey InChI 1.03 QVHGEDIRODVXDV-RIMGRJFKSA-L A2H SMILES_CANONICAL CACTVS 3.385 "CCOc1ccc(Cl)c2[C@@H](CN)O[B-]3(O[C@@H]4[C@@H](CO[P]([O-])([O-])=O)O[C@H]([C@@H]4O3)n5cnc6c(N)ncnc56)c12" A2H SMILES CACTVS 3.385 "CCOc1ccc(Cl)c2[CH](CN)O[B-]3(O[CH]4[CH](CO[P]([O-])([O-])=O)O[CH]([CH]4O3)n5cnc6c(N)ncnc56)c12" A2H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Cl)OCC)O[C@@H]4[C@H](O[C@H]([C@@H]4O2)n5cnc6c5ncnc6N)COP(=O)([O-])[O-]" A2H SMILES "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(ccc(c3C(O1)CN)Cl)OCC)OC4C(OC(C4O2)n5cnc6c5ncnc6N)COP(=O)([O-])[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;[(1S,5R,6R,7'S,8R)-7'-(aminomethyl)-6-(6-aminopurin-9-yl)-5'-chloranyl-2'-ethoxy-spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-8-yl]methyl phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A2H "Create component" 2015-02-03 EBI A2H "Initial release" 2016-03-02 RCSB #