data_A2M # _chem_comp.id A2M _chem_comp.name ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-07-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces A39 _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code A _chem_comp.three_letter_code A2M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A2M P P P 0 1 N N N 50.664 27.779 18.527 4.877 1.015 0.024 P A2M 1 A2M OP1 OP1 O 0 1 N N N 51.940 27.616 19.266 5.886 -0.021 -0.291 OP1 A2M 2 A2M OP3 OP3 O 0 1 N Y N 50.125 26.648 17.728 4.576 1.890 -1.293 OP3 A2M 3 A2M "O5'" "O5'" O 0 1 N N N 50.864 29.067 17.611 3.518 0.307 0.520 "O5'" A2M 4 A2M "C5'" "C5'" C 0 1 N N N 49.752 29.707 17.004 2.831 -0.683 -0.248 "C5'" A2M 5 A2M "C4'" "C4'" C 0 1 N N R 50.168 31.031 16.415 1.585 -1.143 0.511 "C4'" A2M 6 A2M "O4'" "O4'" O 0 1 N N N 50.717 31.876 17.452 0.642 -0.062 0.604 "O4'" A2M 7 A2M "C3'" "C3'" C 0 1 N N R 51.275 30.851 15.387 0.896 -2.287 -0.258 "C3'" A2M 8 A2M "O3'" "O3'" O 0 1 N N N 50.978 31.673 14.241 0.842 -3.468 0.544 "O3'" A2M 9 A2M "C2'" "C2'" C 0 1 N N R 52.567 31.112 16.153 -0.531 -1.754 -0.533 "C2'" A2M 10 A2M "O2'" "O2'" O 0 1 N N N 53.590 31.736 15.432 -1.505 -2.782 -0.342 "O2'" A2M 11 A2M "C1'" "C1'" C 0 1 N N R 52.081 32.074 17.225 -0.677 -0.647 0.541 "C1'" A2M 12 A2M "CM'" "CM'" C 0 1 N N N 54.590 30.765 14.967 -1.812 -3.520 -1.526 "CM'" A2M 13 A2M N9 N9 N 0 1 Y N N 52.783 32.170 18.493 -1.664 0.352 0.123 N9 A2M 14 A2M C8 C8 C 0 1 Y N N 53.139 31.208 19.402 -1.412 1.486 -0.589 C8 A2M 15 A2M N7 N7 N 0 1 Y N N 53.768 31.688 20.451 -2.518 2.143 -0.785 N7 A2M 16 A2M C5 C5 C 0 1 Y N N 53.823 33.056 20.207 -3.547 1.473 -0.213 C5 A2M 17 A2M C6 C6 C 0 1 Y N N 54.354 34.130 20.943 -4.931 1.694 -0.105 C6 A2M 18 A2M N6 N6 N 0 1 N N N 54.940 33.987 22.134 -5.516 2.815 -0.666 N6 A2M 19 A2M N1 N1 N 0 1 Y N N 54.251 35.373 20.410 -5.665 0.799 0.549 N1 A2M 20 A2M C2 C2 C 0 1 Y N N 53.639 35.512 19.226 -5.116 -0.275 1.087 C2 A2M 21 A2M N3 N3 N 0 1 Y N N 53.091 34.579 18.448 -3.826 -0.522 1.011 N3 A2M 22 A2M C4 C4 C 0 1 Y N N 53.224 33.361 19.005 -3.013 0.313 0.372 C4 A2M 23 A2M HOP3 HOP3 H 0 0 N Y N 50.711 25.904 17.796 3.922 2.590 -1.160 HOP3 A2M 24 A2M "H5'" "H5'" H 0 1 N N N 49.357 29.064 16.204 2.536 -0.259 -1.208 "H5'" A2M 25 A2M "H5''" "H5''" H 0 0 N N N 48.974 29.877 17.763 3.490 -1.535 -0.415 "H5''" A2M 26 A2M "H4'" "H4'" H 0 1 N N N 49.275 31.474 15.951 1.863 -1.480 1.510 "H4'" A2M 27 A2M "H3'" "H3'" H 0 1 N N N 51.375 29.850 14.941 1.418 -2.487 -1.194 "H3'" A2M 28 A2M "HO3'" "HO3'" H 0 0 N N N 51.663 31.570 13.591 1.711 -3.813 0.796 "HO3'" A2M 29 A2M "H2'" "H2'" H 0 1 N N N 53.022 30.165 16.479 -0.603 -1.335 -1.537 "H2'" A2M 30 A2M "H1'" "H1'" H 0 1 N N N 52.319 33.047 16.771 -0.950 -1.079 1.504 "H1'" A2M 31 A2M "HM'1" "HM'1" H 0 0 N N N 55.377 31.289 14.405 -2.558 -4.281 -1.297 "HM'1" A2M 32 A2M "HM'2" "HM'2" H 0 0 N N N 55.036 30.255 15.833 -2.203 -2.843 -2.285 "HM'2" A2M 33 A2M "HM'3" "HM'3" H 0 0 N N N 54.105 30.024 14.314 -0.907 -4.000 -1.899 "HM'3" A2M 34 A2M H8 H8 H 0 1 N N N 52.924 30.158 19.269 -0.438 1.795 -0.939 H8 A2M 35 A2M H61 H61 H 0 1 N N N 55.232 34.882 22.472 -4.969 3.461 -1.141 H61 A2M 36 A2M H62 H62 H 0 1 N N N 54.291 33.584 22.779 -6.472 2.956 -0.584 H62 A2M 37 A2M H2 H2 H 0 1 N N N 53.582 36.522 18.849 -5.750 -0.976 1.610 H2 A2M 38 A2M OP2 OP2 O 0 1 N N N 49.473 27.787 19.768 5.438 1.974 1.189 OP2 A2M 39 A2M HOP2 HOP2 H 0 0 N N N 49.895 27.688 20.613 6.257 2.434 0.959 HOP2 A2M 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2M P OP1 DOUB N N 1 A2M P OP3 SING N N 2 A2M P "O5'" SING N N 3 A2M OP3 HOP3 SING N N 4 A2M "O5'" "C5'" SING N N 5 A2M "C5'" "C4'" SING N N 6 A2M "C5'" "H5'" SING N N 7 A2M "C5'" "H5''" SING N N 8 A2M "C4'" "O4'" SING N N 9 A2M "C4'" "C3'" SING N N 10 A2M "C4'" "H4'" SING N N 11 A2M "O4'" "C1'" SING N N 12 A2M "C3'" "O3'" SING N N 13 A2M "C3'" "C2'" SING N N 14 A2M "C3'" "H3'" SING N N 15 A2M "O3'" "HO3'" SING N N 16 A2M "C2'" "O2'" SING N N 17 A2M "C2'" "C1'" SING N N 18 A2M "C2'" "H2'" SING N N 19 A2M "O2'" "CM'" SING N N 20 A2M "C1'" N9 SING N N 21 A2M "C1'" "H1'" SING N N 22 A2M "CM'" "HM'1" SING N N 23 A2M "CM'" "HM'2" SING N N 24 A2M "CM'" "HM'3" SING N N 25 A2M N9 C8 SING Y N 26 A2M N9 C4 SING Y N 27 A2M C8 N7 DOUB Y N 28 A2M C8 H8 SING N N 29 A2M N7 C5 SING Y N 30 A2M C5 C6 SING Y N 31 A2M C5 C4 DOUB Y N 32 A2M C6 N6 SING N N 33 A2M C6 N1 DOUB Y N 34 A2M N6 H61 SING N N 35 A2M N6 H62 SING N N 36 A2M N1 C2 SING Y N 37 A2M C2 N3 DOUB Y N 38 A2M C2 H2 SING N N 39 A2M N3 C4 SING Y N 40 A2M P OP2 SING N N 41 A2M OP2 HOP2 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A2M SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OC)C3O" A2M SMILES_CANONICAL CACTVS 3.370 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3c(N)ncnc23" A2M SMILES CACTVS 3.370 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3c(N)ncnc23" A2M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)O)O" A2M SMILES "OpenEye OEToolkits" 1.7.0 "COC1C(C(OC1n2cnc3c2ncnc3N)COP(=O)(O)O)O" A2M InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-21-8-7(17)5(2-22-24(18,19)20)23-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,20)/t5-,7-,8-,11-/m1/s1" A2M InChIKey InChI 1.03 TVGFEBXIZUYVFR-IOSLPCCCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2M "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; A2M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-methoxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A2M "Create component" 2002-07-25 RCSB A2M "Other modification" 2010-12-21 RCSB A2M "Modify aromatic_flag" 2011-06-04 RCSB A2M "Modify descriptor" 2011-06-04 RCSB #