data_A2P # _chem_comp.id A2P _chem_comp.name "ADENOSINE-2'-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HI3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A2P P1 P1 P 0 1 N N N 14.853 14.452 9.707 2.638 -0.404 2.274 P1 A2P 1 A2P O1P O1P O 0 1 N N N 14.236 15.203 10.876 3.273 -1.585 1.647 O1P A2P 2 A2P O2P O2P O 0 1 N N N 13.843 13.610 8.945 3.697 0.321 3.246 O2P A2P 3 A2P O3P O3P O 0 1 N N N 16.103 13.684 10.089 1.358 -0.873 3.130 O3P A2P 4 A2P P2 P2 P 0 1 N N N 10.348 16.895 7.260 -0.842 -0.078 -5.412 P2 A2P 5 A2P O4P O4P O 0 1 N N N 10.184 16.318 8.663 -1.159 -1.507 -5.196 O4P A2P 6 A2P O5P O5P O 0 1 N N N 9.610 18.218 7.080 -2.040 0.619 -6.230 O5P A2P 7 A2P O6P O6P O 0 1 N N N 10.045 15.878 6.162 0.525 0.046 -6.252 O6P A2P 8 A2P "O5'" O5* O 0 1 N N N 11.931 17.267 7.112 -0.666 0.653 -3.988 "O5'" A2P 9 A2P "C5'" C5* C 0 1 N N N 12.515 17.556 5.824 0.405 -0.008 -3.313 "C5'" A2P 10 A2P "C4'" C4* C 0 1 N N R 14.025 17.584 5.939 0.625 0.641 -1.946 "C4'" A2P 11 A2P "O4'" O4* O 0 1 N N N 14.410 18.588 6.923 -0.559 0.510 -1.130 "O4'" A2P 12 A2P "C3'" C3* C 0 1 N N R 14.640 16.288 6.447 1.727 -0.105 -1.164 "C3'" A2P 13 A2P "O3'" O3* O 0 1 N N N 15.997 16.255 6.024 2.978 0.574 -1.288 "O3'" A2P 14 A2P "C2'" C2* C 0 1 N N R 14.539 16.470 7.958 1.236 -0.073 0.302 "C2'" A2P 15 A2P "O2'" O2* O 0 1 N N N 15.398 15.580 8.661 2.170 0.625 1.128 "O2'" A2P 16 A2P "C1'" C1* C 0 1 N N R 14.898 17.951 8.096 -0.106 0.686 0.229 "C1'" A2P 17 A2P N9 N9 N 0 1 Y N N 14.303 18.630 9.251 -1.071 0.107 1.167 N9 A2P 18 A2P C8 C8 C 0 1 Y N N 13.107 18.371 9.887 -1.930 -0.919 0.910 C8 A2P 19 A2P N7 N7 N 0 1 Y N N 12.847 19.193 10.877 -2.644 -1.177 1.967 N7 A2P 20 A2P C5 C5 C 0 1 Y N N 13.947 20.047 10.900 -2.286 -0.338 2.968 C5 A2P 21 A2P C6 C6 C 0 1 Y N N 14.294 21.158 11.723 -2.706 -0.148 4.296 C6 A2P 22 A2P N6 N6 N 0 1 N N N 13.526 21.621 12.712 -3.700 -0.939 4.844 N6 A2P 23 A2P N1 N1 N 0 1 Y N N 15.477 21.783 11.479 -2.122 0.805 5.014 N1 A2P 24 A2P C2 C2 C 0 1 Y N N 16.256 21.325 10.482 -1.173 1.565 4.499 C2 A2P 25 A2P N3 N3 N 0 1 Y N N 16.036 20.304 9.646 -0.752 1.427 3.260 N3 A2P 26 A2P C4 C4 C 0 1 Y N N 14.855 19.702 9.910 -1.277 0.500 2.465 C4 A2P 27 A2P HOP2 2HOP H 0 0 N N N 14.228 13.140 8.214 3.951 -0.328 3.916 HOP2 A2P 28 A2P HOP3 3HOP H 0 0 N N N 16.488 13.214 9.358 0.975 -0.075 3.520 HOP3 A2P 29 A2P HOP5 5HOP H 0 0 N N N 9.712 18.577 6.206 -2.111 0.153 -7.074 HOP5 A2P 30 A2P HOP6 6HOP H 0 0 N N N 10.147 16.237 5.288 0.695 0.991 -6.370 HOP6 A2P 31 A2P "H5'1" 1H5* H 0 0 N N N 12.167 16.845 5.037 1.315 0.076 -3.907 "H5'1" A2P 32 A2P "H5'2" 2H5* H 0 0 N N N 12.110 18.496 5.382 0.155 -1.060 -3.179 "H5'2" A2P 33 A2P "H4'" H4* H 0 1 N N N 14.389 17.785 4.904 0.889 1.692 -2.064 "H4'" A2P 34 A2P "H3'" H3* H 0 1 N N N 14.159 15.347 6.090 1.816 -1.133 -1.516 "H3'" A2P 35 A2P "HO3'" *HO3 H 0 0 N N N 16.380 15.446 6.341 3.203 0.576 -2.229 "HO3'" A2P 36 A2P "H2'" H2* H 0 1 N N N 13.546 16.225 8.403 1.081 -1.085 0.675 "H2'" A2P 37 A2P "H1'" H1* H 0 1 N N N 16.001 18.014 8.239 0.043 1.744 0.445 "H1'" A2P 38 A2P H8 H8 H 0 1 N N N 12.406 17.561 9.621 -2.006 -1.441 -0.032 H8 A2P 39 A2P HN61 1HN6 H 0 0 N N N 13.774 22.416 13.300 -3.978 -0.801 5.763 HN61 A2P 40 A2P HN62 2HN6 H 0 0 N N N 13.332 20.836 13.333 -4.121 -1.630 4.308 HN62 A2P 41 A2P H2 H2 H 0 1 N N N 17.207 21.861 10.328 -0.726 2.328 5.119 H2 A2P 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2P P1 O1P DOUB N N 1 A2P P1 O2P SING N N 2 A2P P1 O3P SING N N 3 A2P P1 "O2'" SING N N 4 A2P O2P HOP2 SING N N 5 A2P O3P HOP3 SING N N 6 A2P P2 O4P DOUB N N 7 A2P P2 O5P SING N N 8 A2P P2 O6P SING N N 9 A2P P2 "O5'" SING N N 10 A2P O5P HOP5 SING N N 11 A2P O6P HOP6 SING N N 12 A2P "O5'" "C5'" SING N N 13 A2P "C5'" "C4'" SING N N 14 A2P "C5'" "H5'1" SING N N 15 A2P "C5'" "H5'2" SING N N 16 A2P "C4'" "O4'" SING N N 17 A2P "C4'" "C3'" SING N N 18 A2P "C4'" "H4'" SING N N 19 A2P "O4'" "C1'" SING N N 20 A2P "C3'" "O3'" SING N N 21 A2P "C3'" "C2'" SING N N 22 A2P "C3'" "H3'" SING N N 23 A2P "O3'" "HO3'" SING N N 24 A2P "C2'" "O2'" SING N N 25 A2P "C2'" "C1'" SING N N 26 A2P "C2'" "H2'" SING N N 27 A2P "C1'" N9 SING N N 28 A2P "C1'" "H1'" SING N N 29 A2P N9 C8 SING Y N 30 A2P N9 C4 SING Y N 31 A2P C8 N7 DOUB Y N 32 A2P C8 H8 SING N N 33 A2P N7 C5 SING Y N 34 A2P C5 C6 SING Y N 35 A2P C5 C4 DOUB Y N 36 A2P C6 N6 SING N N 37 A2P C6 N1 DOUB Y N 38 A2P N6 HN61 SING N N 39 A2P N6 HN62 SING N N 40 A2P N1 C2 SING Y N 41 A2P C2 N3 DOUB Y N 42 A2P C2 H2 SING N N 43 A2P N3 C4 SING Y N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A2P SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OP(=O)(O)O)C3O" A2P SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O[P](O)(O)=O" A2P SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O[P](O)(O)=O" A2P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)OP(=O)(O)O)N" A2P SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)OP(=O)(O)O)N" A2P InChI InChI 1.03 "InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(25-27(20,21)22)6(16)4(24-10)1-23-26(17,18)19/h2-4,6-7,10,16H,1H2,(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1" A2P InChIKey InChI 1.03 AEOBEOJCBAYXBA-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2P "SYSTEMATIC NAME" ACDLabs 10.04 ;adenosine 2',5'-bis(dihydrogen phosphate) ; A2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-4-hydroxy-5-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A2P "Create component" 1999-07-08 RCSB A2P "Modify descriptor" 2011-06-04 RCSB #