data_A3O # _chem_comp.id A3O _chem_comp.name "methyl (1R,3R)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methylcarbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H34 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.671 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PT8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A3O O1 O1 O 0 1 N N N N N N 52.366 -38.600 -0.593 -10.174 2.315 1.671 O1 A3O 1 A3O C2 C1 C 0 1 N N R N N N 54.459 -34.689 0.163 -6.792 0.582 -0.041 C2 A3O 2 A3O C4 C2 C 0 1 N N R N N N 52.818 -36.334 -1.091 -8.669 2.228 -0.139 C4 A3O 3 A3O C5 C3 C 0 1 N N N N N N 54.075 -36.987 -1.622 -9.122 1.711 -1.505 C5 A3O 4 A3O C6 C4 C 0 1 N N N N N N 55.160 -36.011 -2.002 -7.897 1.231 -2.300 C6 A3O 5 A3O C14 C5 C 0 1 N N N N N N 51.919 -37.468 -0.682 -9.855 2.785 0.605 C14 A3O 6 A3O C16 C6 C 0 1 N N N N N N 55.064 -34.673 1.537 -6.258 -0.632 0.675 C16 A3O 7 A3O C17 C7 C 0 1 Y N N N N N 57.293 -35.513 3.500 -3.399 -2.931 0.207 C17 A3O 8 A3O C18 C8 C 0 1 Y N N N N N 58.488 -36.010 2.986 -3.514 -3.870 -0.803 C18 A3O 9 A3O C19 C9 C 0 1 Y N N N N N 59.673 -35.308 3.185 -2.386 -4.337 -1.454 C19 A3O 10 A3O C20 C10 C 0 1 Y N N N N N 59.683 -34.114 3.885 -1.138 -3.869 -1.099 C20 A3O 11 A3O C23 C11 C 0 1 N N N N N N 58.574 -32.334 5.140 0.319 -2.415 0.305 C23 A3O 12 A3O C26 C12 C 0 1 Y N N N N N 57.476 -30.687 6.424 2.676 -2.328 -0.021 C26 A3O 13 A3O C27 C13 C 0 1 Y N N N N N 56.485 -29.753 6.182 2.968 -1.945 1.281 C27 A3O 14 A3O C28 C14 C 0 1 Y N N N N N 56.450 -28.554 6.860 4.207 -1.417 1.584 C28 A3O 15 A3O C29 C15 C 0 1 Y N N N N N 57.435 -28.234 7.800 5.162 -1.270 0.586 C29 A3O 16 A3O C7 C16 C 0 1 N N N N N N 52.177 -35.596 -2.261 -7.628 3.333 -0.335 C7 A3O 17 A3O C15 C17 C 0 1 N N N N N N 49.651 -38.343 -0.116 -11.689 4.287 0.854 C15 A3O 18 A3O C10 C18 C 0 1 N N N N N N 56.017 -36.292 3.266 -4.633 -2.432 0.914 C10 A3O 19 A3O C21 C19 C 0 1 Y N N N N N 58.490 -33.623 4.392 -1.015 -2.922 -0.081 C21 A3O 20 A3O C22 C20 C 0 1 Y N N N N N 57.290 -34.307 4.198 -2.157 -2.454 0.571 C22 A3O 21 A3O C30 C21 C 0 1 Y N N N N N 58.433 -29.164 7.995 4.869 -1.653 -0.716 C30 A3O 22 A3O C31 C22 C 0 1 Y N N N N N 58.471 -30.374 7.324 3.630 -2.181 -1.019 C31 A3O 23 A3O C33 C23 C 0 1 Y N N N N N 57.138 -25.876 8.160 7.076 0.062 -0.030 C33 A3O 24 A3O C35 C24 C 0 1 Y N N N N N 55.858 -24.031 8.767 7.132 1.000 -2.135 C35 A3O 25 A3O C36 C25 C 0 1 Y N N N N N 56.141 -23.420 7.554 8.338 1.604 -1.827 C36 A3O 26 A3O C37 C26 C 0 1 Y N N N N N 56.927 -24.113 6.645 8.881 1.397 -0.556 C37 A3O 27 A3O C39 C27 C 0 1 N N N N N N 55.296 -27.691 6.488 4.524 -1.001 2.997 C39 A3O 28 A3O C1 C28 C 0 1 N N N N N N 55.485 -35.140 -0.829 -7.151 0.215 -1.464 C1 A3O 29 A3O C40 C29 C 0 1 Y N N N N N 57.233 -23.447 5.354 10.169 2.027 -0.176 C40 A3O 30 A3O C41 C30 C 0 1 Y N N N N N 56.481 -22.353 4.965 10.712 1.821 1.096 C41 A3O 31 A3O C42 C31 C 0 1 Y N N N N N 56.751 -21.742 3.743 11.916 2.431 1.402 C42 A3O 32 A3O C43 C32 C 0 1 Y N N N N N 57.762 -22.230 2.920 12.537 3.218 0.449 C43 A3O 33 A3O C45 C33 C 0 1 Y N N N N N 58.218 -23.917 4.499 10.859 2.830 -1.081 C45 A3O 34 A3O C3 C34 C 0 1 N N N N N N 53.107 -35.421 0.114 -8.052 1.086 0.669 C3 A3O 35 A3O N2 N1 N 0 1 N N N N N N 55.146 -35.842 2.182 -5.152 -1.252 0.218 N2 A3O 36 A3O N25 N2 N 0 1 N N N N N N 57.486 -31.839 5.719 1.421 -2.868 -0.327 N25 A3O 37 A3O N32 N3 N 0 1 N N N N N N 57.515 -27.108 8.545 6.418 -0.734 0.893 N32 A3O 38 A3O N34 N4 N 0 1 Y N N N N N 56.334 -25.240 9.046 6.535 0.245 -1.226 N34 A3O 39 A3O N38 N5 N 0 1 Y N N N N N 57.422 -25.337 6.953 8.225 0.626 0.308 N38 A3O 40 A3O N44 N6 N 0 1 Y N N N N N 58.466 -23.299 3.326 12.000 3.394 -0.743 N44 A3O 41 A3O O2 O2 O 0 1 N N N N N N 55.447 -33.603 1.977 -6.824 -1.051 1.662 O2 A3O 42 A3O O O3 O 0 1 N N N N N N 50.528 -37.239 -0.316 -10.558 3.802 0.082 O A3O 43 A3O O4 O4 O 0 1 N N N N N N 56.624 -34.720 -0.733 -6.852 -0.862 -1.921 O4 A3O 44 A3O O24 O5 O 0 1 N N N N N N 59.659 -31.778 5.173 0.424 -1.590 1.192 O24 A3O 45 A3O H1 H1 H 0 1 N N N N N N 54.237 -33.640 -0.083 -6.035 1.366 -0.046 H1 A3O 46 A3O H2 H2 H 0 1 N N N N N N 53.810 -37.574 -2.514 -9.816 0.882 -1.368 H2 A3O 47 A3O H3 H3 H 0 1 N N N N N N 54.470 -37.659 -0.846 -9.618 2.514 -2.052 H3 A3O 48 A3O H4 H4 H 0 1 N N N N N N 56.060 -36.565 -2.307 -8.223 0.770 -3.233 H4 A3O 49 A3O H5 H5 H 0 1 N N N N N N 54.813 -35.385 -2.838 -7.246 2.079 -2.516 H5 A3O 50 A3O H6 H6 H 0 1 N N N N N N 58.495 -36.938 2.434 -4.489 -4.240 -1.085 H6 A3O 51 A3O H7 H7 H 0 1 N N N N N N 60.598 -35.700 2.788 -2.483 -5.069 -2.241 H7 A3O 52 A3O H8 H8 H 0 1 N N N N N N 60.606 -33.573 4.034 -0.258 -4.235 -1.607 H8 A3O 53 A3O H9 H9 H 0 1 N N N N N N 55.723 -29.968 5.447 2.225 -2.059 2.057 H9 A3O 54 A3O H10 H10 H 0 1 N N N N N N 51.254 -35.102 -1.922 -7.306 3.705 0.638 H10 A3O 55 A3O H11 H11 H 0 1 N N N N N N 52.877 -34.840 -2.645 -6.769 2.931 -0.873 H11 A3O 56 A3O H12 H12 H 0 1 N N N N N N 51.937 -36.313 -3.060 -8.067 4.148 -0.909 H12 A3O 57 A3O H13 H13 H 0 1 N N N N N N 48.650 -37.973 0.152 -12.168 5.108 0.320 H13 A3O 58 A3O H14 H14 H 0 1 N N N N N N 49.587 -38.933 -1.042 -12.405 3.478 0.996 H14 A3O 59 A3O H15 H15 H 0 1 N N N N N N 50.038 -38.976 0.696 -11.341 4.640 1.825 H15 A3O 60 A3O H16 H16 H 0 1 N N N N N N 55.432 -36.255 4.197 -5.391 -3.215 0.917 H16 A3O 61 A3O H17 H17 H 0 1 N N N N N N 56.300 -37.333 3.052 -4.381 -2.167 1.941 H17 A3O 62 A3O H18 H18 H 0 1 N N N N N N 56.366 -33.905 4.586 -2.069 -1.721 1.360 H18 A3O 63 A3O H19 H19 H 0 1 N N N N N N 59.219 -28.939 8.701 5.612 -1.539 -1.492 H19 A3O 64 A3O H20 H20 H 0 1 N N N N N N 59.277 -31.070 7.505 3.403 -2.479 -2.032 H20 A3O 65 A3O H21 H21 H 0 1 N N N N N N 55.244 -23.518 9.493 6.683 1.142 -3.106 H21 A3O 66 A3O H22 H22 H 0 1 N N N N N N 55.761 -22.435 7.325 8.846 2.224 -2.551 H22 A3O 67 A3O H23 H23 H 0 1 N N N N N N 54.442 -27.917 7.143 4.954 -1.844 3.537 H23 A3O 68 A3O H24 H24 H 0 1 N N N N N N 55.577 -26.634 6.604 5.238 -0.177 2.982 H24 A3O 69 A3O H25 H25 H 0 1 N N N N N N 55.017 -27.884 5.442 3.609 -0.679 3.495 H25 A3O 70 A3O H26 H26 H 0 1 N N N N N N 55.694 -21.977 5.602 10.205 1.202 1.821 H26 A3O 71 A3O H27 H27 H 0 1 N N N N N N 56.173 -20.885 3.432 12.366 2.295 2.374 H27 A3O 72 A3O H28 H28 H 0 1 N N N N N N 57.976 -21.758 1.973 13.475 3.700 0.686 H28 A3O 73 A3O H29 H29 H 0 1 N N N N N N 58.793 -24.788 4.775 10.453 2.995 -2.068 H29 A3O 74 A3O H30 H30 H 0 1 N Y N N N N 52.319 -34.653 0.138 -8.771 0.271 0.755 H30 A3O 75 A3O H31 H31 H 0 1 N N N N N N 53.040 -36.044 1.018 -7.789 1.445 1.664 H31 A3O 76 A3O H32 H32 H 0 1 N N N N N N 54.495 -36.532 1.866 -4.699 -0.917 -0.572 H32 A3O 77 A3O H33 H33 H 0 1 N N N N N N 56.629 -32.346 5.628 1.344 -3.569 -0.994 H33 A3O 78 A3O H34 H34 H 0 1 N N N N N N 57.889 -27.200 9.468 6.828 -0.921 1.752 H34 A3O 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A3O C7 C4 SING N N 1 A3O C6 C5 SING N N 2 A3O C6 C1 SING N N 3 A3O C5 C4 SING N N 4 A3O C4 C14 SING N N 5 A3O C4 C3 SING N N 6 A3O C1 O4 DOUB N N 7 A3O C1 C2 SING N N 8 A3O C14 O1 DOUB N N 9 A3O C14 O SING N N 10 A3O O C15 SING N N 11 A3O C3 C2 SING N N 12 A3O C2 C16 SING N N 13 A3O C16 O2 DOUB N N 14 A3O C16 N2 SING N N 15 A3O N2 C10 SING N N 16 A3O C43 N44 DOUB Y N 17 A3O C43 C42 SING Y N 18 A3O C18 C19 DOUB Y N 19 A3O C18 C17 SING Y N 20 A3O C19 C20 SING Y N 21 A3O C10 C17 SING N N 22 A3O N44 C45 SING Y N 23 A3O C17 C22 DOUB Y N 24 A3O C42 C41 DOUB Y N 25 A3O C20 C21 DOUB Y N 26 A3O C22 C21 SING Y N 27 A3O C21 C23 SING N N 28 A3O C45 C40 DOUB Y N 29 A3O C41 C40 SING Y N 30 A3O C23 O24 DOUB N N 31 A3O C23 N25 SING N N 32 A3O C40 C37 SING N N 33 A3O N25 C26 SING N N 34 A3O C27 C26 DOUB Y N 35 A3O C27 C28 SING Y N 36 A3O C26 C31 SING Y N 37 A3O C39 C28 SING N N 38 A3O C37 N38 DOUB Y N 39 A3O C37 C36 SING Y N 40 A3O C28 C29 DOUB Y N 41 A3O N38 C33 SING Y N 42 A3O C31 C30 DOUB Y N 43 A3O C36 C35 DOUB Y N 44 A3O C29 C30 SING Y N 45 A3O C29 N32 SING N N 46 A3O C33 N32 SING N N 47 A3O C33 N34 DOUB Y N 48 A3O C35 N34 SING Y N 49 A3O C2 H1 SING N N 50 A3O C5 H2 SING N N 51 A3O C5 H3 SING N N 52 A3O C6 H4 SING N N 53 A3O C6 H5 SING N N 54 A3O C18 H6 SING N N 55 A3O C19 H7 SING N N 56 A3O C20 H8 SING N N 57 A3O C27 H9 SING N N 58 A3O C7 H10 SING N N 59 A3O C7 H11 SING N N 60 A3O C7 H12 SING N N 61 A3O C15 H13 SING N N 62 A3O C15 H14 SING N N 63 A3O C15 H15 SING N N 64 A3O C10 H16 SING N N 65 A3O C10 H17 SING N N 66 A3O C22 H18 SING N N 67 A3O C30 H19 SING N N 68 A3O C31 H20 SING N N 69 A3O C35 H21 SING N N 70 A3O C36 H22 SING N N 71 A3O C39 H23 SING N N 72 A3O C39 H24 SING N N 73 A3O C39 H25 SING N N 74 A3O C41 H26 SING N N 75 A3O C42 H27 SING N N 76 A3O C43 H28 SING N N 77 A3O C45 H29 SING N N 78 A3O C3 H30 SING N N 79 A3O C3 H31 SING N N 80 A3O N2 H32 SING N N 81 A3O N25 H33 SING N N 82 A3O N32 H34 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A3O InChI InChI 1.06 "InChI=1S/C34H34N6O5/c1-21-16-25(9-10-27(21)39-33-36-15-12-28(40-33)24-8-5-14-35-20-24)38-30(42)23-7-4-6-22(17-23)19-37-31(43)26-18-34(2,32(44)45-3)13-11-29(26)41/h4-10,12,14-17,20,26H,11,13,18-19H2,1-3H3,(H,37,43)(H,38,42)(H,36,39,40)/t26-,34-/m1/s1" A3O InChIKey InChI 1.06 GREBBMSDFQCEIO-OOXUFLSTSA-N A3O SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@]1(C)CCC(=O)[C@@H](C1)C(=O)NCc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3" A3O SMILES CACTVS 3.385 "COC(=O)[C]1(C)CCC(=O)[CH](C1)C(=O)NCc2cccc(c2)C(=O)Nc3ccc(Nc4nccc(n4)c5cccnc5)c(C)c3" A3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)CNC(=O)[C@@H]5C[C@](CCC5=O)(C)C(=O)OC" A3O SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1Nc2nccc(n2)c3cccnc3)NC(=O)c4cccc(c4)CNC(=O)C5CC(CCC5=O)(C)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id A3O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (1~{R},3~{R})-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methylcarbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A3O "Create component" 2023-07-17 PDBE A3O "Modify leaving atom flag" 2023-08-07 PDBE A3O "Initial release" 2024-07-24 RCSB A3O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A3O _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #