data_A3T # _chem_comp.id A3T _chem_comp.name "3'-deoxy-3'-(L-threonylamino)adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-11-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A3T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3PD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A3T C C C 0 1 N N N 7.971 4.283 -14.222 -3.450 0.355 -0.760 C A3T 1 A3T N N N 0 1 N N N 7.969 2.142 -13.052 -5.617 1.377 -1.166 N A3T 2 A3T O O O 0 1 N N N 9.175 4.588 -13.671 -3.879 -0.627 -1.328 O A3T 3 A3T N1 N1 N 0 1 Y N N 14.013 7.145 -16.833 5.427 2.045 0.276 N1 A3T 4 A3T C2 C2 C 0 1 Y N N 13.349 6.004 -16.893 4.216 2.545 0.442 C2 A3T 5 A3T N3 N3 N 0 1 Y N N 12.076 5.955 -17.243 3.134 1.796 0.429 N3 A3T 6 A3T C4 C4 C 0 1 Y N N 11.408 7.077 -17.548 3.222 0.482 0.247 C4 A3T 7 A3T C5 C5 C 0 1 Y N N 12.071 8.296 -17.490 4.488 -0.099 0.065 C5 A3T 8 A3T C6 C6 C 0 1 Y N N 13.411 8.307 -17.124 5.614 0.743 0.086 C6 A3T 9 A3T N6 N6 N 0 1 N N N 14.088 9.452 -17.086 6.886 0.228 -0.087 N6 A3T 10 A3T N7 N7 N 0 1 Y N N 11.199 9.242 -17.824 4.297 -1.430 -0.097 N7 A3T 11 A3T C8 C8 C 0 1 Y N N 10.037 8.648 -18.085 3.025 -1.697 -0.028 C8 A3T 12 A3T N8 N8 N 0 1 N N N 7.491 4.831 -15.336 -2.135 0.454 -0.484 N8 A3T 13 A3T N9 N9 N 0 1 Y N N 10.159 7.332 -17.927 2.320 -0.549 0.183 N9 A3T 14 A3T CA CA C 0 1 N N S 7.104 3.232 -13.526 -4.388 1.467 -0.367 CA A3T 15 A3T CB CB C 0 1 N N R 6.359 3.844 -12.338 -4.734 1.341 1.118 CB A3T 16 A3T OG OG O 0 1 N N N 5.388 2.900 -11.876 -5.258 0.037 1.376 OG A3T 17 A3T "C1'" "C1'" C 0 1 N N R 9.104 6.342 -18.244 0.865 -0.439 0.317 "C1'" A3T 18 A3T "C2'" "C2'" C 0 1 N N R 9.022 5.186 -17.245 0.217 -0.082 -1.045 "C2'" A3T 19 A3T "O2'" "O2'" O 0 1 N N N 8.268 4.116 -17.822 0.207 1.333 -1.250 "O2'" A3T 20 A3T "C3'" "C3'" C 0 1 N N S 8.212 5.838 -16.128 -1.222 -0.625 -0.872 "C3'" A3T 21 A3T "C4'" "C4'" C 0 1 N N S 7.207 6.681 -16.914 -1.100 -1.662 0.262 "C4'" A3T 22 A3T "O4'" "O4'" O 0 1 N N N 7.827 6.999 -18.173 0.285 -1.721 0.640 "O4'" A3T 23 A3T "C5'" "C5'" C 0 1 N N N 6.891 7.953 -16.124 -1.562 -3.033 -0.235 "C5'" A3T 24 A3T "O5'" "O5'" O 0 1 N N N 8.104 8.635 -15.795 -1.556 -3.961 0.852 "O5'" A3T 25 A3T CG2 CG2 C 0 1 N N N 5.707 5.179 -12.706 -5.781 2.394 1.489 CG2 A3T 26 A3T HN HN H 0 1 N N N 7.412 1.449 -12.595 -5.423 1.521 -2.145 HN A3T 27 A3T HNA HNA H 0 1 N N N 8.442 1.729 -13.831 -6.082 0.494 -1.016 HNA A3T 28 A3T H2 H2 H 0 1 N N N 13.862 5.085 -16.649 4.110 3.609 0.593 H2 A3T 29 A3T HN6 HN6 H 0 1 N N N 15.035 9.271 -16.822 7.655 0.819 -0.071 HN6 A3T 30 A3T HN6A HN6A H 0 0 N N N 14.070 9.880 -17.990 7.010 -0.725 -0.224 HN6A A3T 31 A3T H8 H8 H 0 1 N N N 9.131 9.157 -18.380 2.592 -2.681 -0.124 H8 A3T 32 A3T HN8 HN8 H 0 1 N N N 6.588 4.541 -15.652 -1.792 1.239 -0.029 HN8 A3T 33 A3T HA HA H 0 1 N N N 6.362 2.848 -14.241 -3.907 2.429 -0.547 HA A3T 34 A3T HB HB H 0 1 N N N 7.076 4.062 -11.533 -3.836 1.497 1.716 HB A3T 35 A3T HOG HOG H 0 1 N N N 4.916 3.266 -11.137 -6.060 -0.171 0.878 HOG A3T 36 A3T "H1'" "H1'" H 0 1 N N N 9.353 5.941 -19.238 0.606 0.304 1.072 "H1'" A3T 37 A3T "H2'" "H2'" H 0 1 N N N 9.990 4.767 -16.932 0.729 -0.588 -1.864 "H2'" A3T 38 A3T "HO2'" "HO2'" H 0 0 N N N 8.215 3.396 -17.204 1.087 1.733 -1.275 "HO2'" A3T 39 A3T "H3'" "H3'" H 0 1 N N N 8.833 6.402 -15.416 -1.564 -1.101 -1.791 "H3'" A3T 40 A3T "H4'" "H4'" H 0 1 N N N 6.262 6.144 -17.081 -1.704 -1.352 1.114 "H4'" A3T 41 A3T "H5'" "H5'" H 0 1 N N N 6.256 8.612 -16.734 -2.572 -2.952 -0.638 "H5'" A3T 42 A3T "H5'A" "H5'A" H 0 0 N N N 6.361 7.685 -15.198 -0.887 -3.383 -1.015 "H5'A" A3T 43 A3T "HO5'" "HO5'" H 0 0 N N N 7.902 9.423 -15.305 -1.839 -4.853 0.609 "HO5'" A3T 44 A3T HG2 HG2 H 0 1 N N N 5.183 5.586 -11.829 -6.680 2.238 0.891 HG2 A3T 45 A3T HG2A HG2A H 0 0 N N N 6.482 5.888 -13.031 -6.028 2.304 2.547 HG2A A3T 46 A3T HG2B HG2B H 0 0 N N N 4.987 5.022 -13.523 -5.382 3.389 1.292 HG2B A3T 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A3T C O DOUB N N 1 A3T C N8 SING N N 2 A3T C CA SING N N 3 A3T N CA SING N N 4 A3T N1 C2 DOUB Y N 5 A3T N1 C6 SING Y N 6 A3T C2 N3 SING Y N 7 A3T N3 C4 DOUB Y N 8 A3T C4 C5 SING Y N 9 A3T C4 N9 SING Y N 10 A3T C5 C6 DOUB Y N 11 A3T C5 N7 SING Y N 12 A3T C6 N6 SING N N 13 A3T N7 C8 DOUB Y N 14 A3T C8 N9 SING Y N 15 A3T N8 "C3'" SING N N 16 A3T N9 "C1'" SING N N 17 A3T CA CB SING N N 18 A3T CB OG SING N N 19 A3T CB CG2 SING N N 20 A3T "C1'" "C2'" SING N N 21 A3T "C1'" "O4'" SING N N 22 A3T "C2'" "O2'" SING N N 23 A3T "C2'" "C3'" SING N N 24 A3T "C3'" "C4'" SING N N 25 A3T "C4'" "O4'" SING N N 26 A3T "C4'" "C5'" SING N N 27 A3T "C5'" "O5'" SING N N 28 A3T N HN SING N N 29 A3T N HNA SING N N 30 A3T C2 H2 SING N N 31 A3T N6 HN6 SING N N 32 A3T N6 HN6A SING N N 33 A3T C8 H8 SING N N 34 A3T N8 HN8 SING N N 35 A3T CA HA SING N N 36 A3T CB HB SING N N 37 A3T OG HOG SING N N 38 A3T "C1'" "H1'" SING N N 39 A3T "C2'" "H2'" SING N N 40 A3T "O2'" "HO2'" SING N N 41 A3T "C3'" "H3'" SING N N 42 A3T "C4'" "H4'" SING N N 43 A3T "C5'" "H5'" SING N N 44 A3T "C5'" "H5'A" SING N N 45 A3T "O5'" "HO5'" SING N N 46 A3T CG2 HG2 SING N N 47 A3T CG2 HG2A SING N N 48 A3T CG2 HG2B SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A3T SMILES ACDLabs 12.01 "O=C(NC3C(OC(n2cnc1c(ncnc12)N)C3O)CO)C(N)C(O)C" A3T SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O)[C@H](N)C(=O)N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO)n2cnc3c(N)ncnc23" A3T SMILES CACTVS 3.370 "C[CH](O)[CH](N)C(=O)N[CH]1[CH](O)[CH](O[CH]1CO)n2cnc3c(N)ncnc23" A3T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]([C@@H](C(=O)N[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)CO)N)O" A3T SMILES "OpenEye OEToolkits" 1.7.0 "CC(C(C(=O)NC1C(OC(C1O)n2cnc3c2ncnc3N)CO)N)O" A3T InChI InChI 1.03 "InChI=1S/C14H21N7O5/c1-5(23)7(15)13(25)20-8-6(2-22)26-14(10(8)24)21-4-19-9-11(16)17-3-18-12(9)21/h3-8,10,14,22-24H,2,15H2,1H3,(H,20,25)(H2,16,17,18)/t5-,6-,7+,8-,10-,14-/m1/s1" A3T InChIKey InChI 1.03 JYCQZCJEBNTMCV-JHJLZTHQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A3T "SYSTEMATIC NAME" ACDLabs 12.01 "3'-deoxy-3'-(L-threonylamino)adenosine" A3T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-N-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]-2-azanyl-3-hydroxy-butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A3T "Create component" 2010-11-18 PDBJ A3T "Modify aromatic_flag" 2011-06-04 RCSB A3T "Modify descriptor" 2011-06-04 RCSB #