data_A4F # _chem_comp.id A4F _chem_comp.name "5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 5-aminofluorescein _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-05-20 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.321 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZS3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A4F O5 O1 O 0 1 N N N 177.839 5.548 33.872 -2.583 0.537 2.897 O5 A4F 1 A4F C17 C1 C 0 1 N N N 177.219 6.364 33.149 -1.737 0.338 1.869 C17 A4F 2 A4F O4 O2 O 0 1 N N N 177.226 6.282 31.904 -0.560 0.618 1.987 O4 A4F 3 A4F C18 C2 C 0 1 Y N N 176.436 7.445 33.772 -2.239 -0.220 0.596 C18 A4F 4 A4F C19 C3 C 0 1 Y N N 177.085 8.287 34.674 -3.583 -0.540 0.456 C19 A4F 5 A4F C20 C4 C 0 1 Y N N 176.383 9.315 35.290 -4.050 -1.065 -0.746 C20 A4F 6 A4F N1 N1 N 0 1 N N N 176.983 10.123 36.149 -5.396 -1.385 -0.884 N1 A4F 7 A4F C16 C5 C 0 1 Y N N 175.036 9.489 34.992 -3.176 -1.271 -1.810 C16 A4F 8 A4F C15 C6 C 0 1 Y N N 174.390 8.640 34.091 -1.841 -0.957 -1.685 C15 A4F 9 A4F C14 C7 C 0 1 Y N N 175.078 7.610 33.454 -1.356 -0.424 -0.487 C14 A4F 10 A4F C1 C8 C 0 1 N N N 174.407 6.760 32.583 0.068 -0.083 -0.353 C1 A4F 11 A4F C13 C9 C 0 1 Y N N 173.807 7.210 31.376 1.088 -1.125 -0.196 C13 A4F 12 A4F C12 C10 C 0 1 Y N N 174.111 8.445 30.792 0.731 -2.479 -0.162 C12 A4F 13 A4F C11 C11 C 0 1 Y N N 173.488 8.847 29.604 1.696 -3.431 -0.015 C11 A4F 14 A4F C10 C12 C 0 1 Y N N 172.548 8.025 28.981 3.037 -3.062 0.103 C10 A4F 15 A4F O3 O3 O 0 1 N N N 171.930 8.390 27.851 3.987 -4.020 0.250 O3 A4F 16 A4F C9 C13 C 0 1 Y N N 172.244 6.802 29.552 3.408 -1.728 0.073 C9 A4F 17 A4F C8 C14 C 0 1 Y N N 172.865 6.406 30.723 2.440 -0.745 -0.077 C8 A4F 18 A4F O2 O4 O 0 1 N N N 172.508 5.181 31.236 2.790 0.557 -0.108 O2 A4F 19 A4F C2 C15 C 0 1 N N N 174.030 5.494 33.087 0.505 1.262 -0.378 C2 A4F 20 A4F C7 C16 C 0 1 N N N 173.083 4.717 32.410 1.885 1.547 -0.252 C7 A4F 21 A4F C6 C17 C 0 1 N N N 172.700 3.469 32.901 2.307 2.862 -0.277 C6 A4F 22 A4F C3 C18 C 0 1 N N N 174.576 4.978 34.276 -0.425 2.308 -0.533 C3 A4F 23 A4F C4 C19 C 0 1 N N N 174.200 3.728 34.753 0.000 3.596 -0.555 C4 A4F 24 A4F C5 C20 C 0 1 N N N 173.260 2.973 34.074 1.372 3.893 -0.425 C5 A4F 25 A4F O1 O5 O 0 1 N N N 172.905 1.782 34.554 1.749 5.059 -0.447 O1 A4F 26 A4F H1 H1 H 0 1 N N N 178.278 4.908 33.324 -2.208 0.904 3.710 H1 A4F 27 A4F H2 H2 H 0 1 N N N 178.132 8.140 34.893 -4.265 -0.383 1.279 H2 A4F 28 A4F H3 H3 H 0 1 N N N 176.326 10.796 36.488 -6.007 -1.243 -0.144 H3 A4F 29 A4F H4 H4 H 0 1 N N N 177.339 9.589 36.916 -5.724 -1.751 -1.720 H4 A4F 30 A4F H5 H5 H 0 1 N N N 174.484 10.289 35.462 -3.547 -1.679 -2.739 H5 A4F 31 A4F H6 H6 H 0 1 N N N 173.340 8.784 33.885 -1.168 -1.119 -2.514 H6 A4F 32 A4F H7 H7 H 0 1 N N N 174.834 9.095 31.263 -0.306 -2.768 -0.253 H7 A4F 33 A4F H8 H8 H 0 1 N N N 173.737 9.802 29.166 1.422 -4.475 0.010 H8 A4F 34 A4F H9 H9 H 0 1 N N N 172.240 9.247 27.582 4.172 -4.253 1.170 H9 A4F 35 A4F H10 H10 H 0 1 N N N 171.519 6.154 29.082 4.448 -1.453 0.166 H10 A4F 36 A4F H11 H11 H 0 1 N N N 171.965 2.885 32.368 3.358 3.095 -0.181 H11 A4F 37 A4F H12 H12 H 0 1 N N N 175.298 5.562 34.827 -1.477 2.085 -0.633 H12 A4F 38 A4F H13 H13 H 0 1 N N N 174.644 3.344 35.659 -0.715 4.397 -0.674 H13 A4F 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A4F O3 C10 SING N N 1 A4F C10 C9 DOUB Y N 2 A4F C10 C11 SING Y N 3 A4F C9 C8 SING Y N 4 A4F C11 C12 DOUB Y N 5 A4F C8 O2 SING N N 6 A4F C8 C13 DOUB Y N 7 A4F C12 C13 SING Y N 8 A4F O2 C7 SING N N 9 A4F C13 C1 SING N N 10 A4F O4 C17 DOUB N N 11 A4F C7 C6 DOUB N N 12 A4F C7 C2 SING N N 13 A4F C1 C2 DOUB N N 14 A4F C1 C14 SING N N 15 A4F C6 C5 SING N N 16 A4F C2 C3 SING N N 17 A4F C17 C18 SING N N 18 A4F C17 O5 SING N N 19 A4F C14 C18 DOUB Y N 20 A4F C14 C15 SING Y N 21 A4F C18 C19 SING Y N 22 A4F C5 O1 DOUB N N 23 A4F C5 C4 SING N N 24 A4F C15 C16 DOUB Y N 25 A4F C3 C4 DOUB N N 26 A4F C19 C20 DOUB Y N 27 A4F C16 C20 SING Y N 28 A4F C20 N1 SING N N 29 A4F O5 H1 SING N N 30 A4F C19 H2 SING N N 31 A4F N1 H3 SING N N 32 A4F N1 H4 SING N N 33 A4F C16 H5 SING N N 34 A4F C15 H6 SING N N 35 A4F C12 H7 SING N N 36 A4F C11 H8 SING N N 37 A4F O3 H9 SING N N 38 A4F C9 H10 SING N N 39 A4F C6 H11 SING N N 40 A4F C3 H12 SING N N 41 A4F C4 H13 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A4F SMILES ACDLabs 12.01 "OC(c1cc(N)ccc1C2=C4C=CC(C=C4Oc3c2ccc(c3)O)=O)=O" A4F InChI InChI 1.03 "InChI=1S/C20H13NO5/c21-10-1-4-13(16(7-10)20(24)25)19-14-5-2-11(22)8-17(14)26-18-9-12(23)3-6-15(18)19/h1-9,22H,21H2,(H,24,25)" A4F InChIKey InChI 1.03 UTUYQGGHTUQHQQ-UHFFFAOYSA-N A4F SMILES_CANONICAL CACTVS 3.385 "Nc1ccc(c(c1)C(O)=O)C2=C3C=CC(=O)C=C3Oc4cc(O)ccc24" A4F SMILES CACTVS 3.385 "Nc1ccc(c(c1)C(O)=O)C2=C3C=CC(=O)C=C3Oc4cc(O)ccc24" A4F SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(c(cc1N)C(=O)O)C2=C3C=CC(=O)C=C3Oc4c2ccc(c4)O" A4F SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(c(cc1N)C(=O)O)C2=C3C=CC(=O)C=C3Oc4c2ccc(c4)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A4F "SYSTEMATIC NAME" ACDLabs 12.01 "5-amino-2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)benzoic acid" A4F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-azanyl-2-(3-oxidanyl-6-oxidanylidene-xanthen-9-yl)benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A4F "Create component" 2015-05-20 RCSB A4F "Modify synonyms" 2015-06-29 RCSB A4F "Initial release" 2015-11-04 RCSB A4F "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A4F _pdbx_chem_comp_synonyms.name 5-aminofluorescein _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##