data_A5O # _chem_comp.id A5O _chem_comp.name ;ADENINE ARABINOSE-5'-PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-10-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code A _chem_comp.three_letter_code A5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2KP3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A5O P P P 0 1 N N N -10.340 0.146 -4.477 -4.853 -0.946 0.169 P A5O 1 A5O N1 N1 N 0 1 Y N N -1.456 3.813 -3.408 5.801 -0.366 0.763 N1 A5O 2 A5O C2 C2 C 0 1 Y N N -2.380 4.590 -2.864 5.141 0.604 1.370 C2 A5O 3 A5O N3 N3 N 0 1 Y N N -3.696 4.483 -2.965 3.846 0.783 1.214 N3 A5O 4 A5O C4 C4 C 0 1 Y N N -4.055 3.437 -3.757 3.141 -0.023 0.425 C4 A5O 5 A5O C5 C5 C 0 1 Y N N -3.231 2.549 -4.391 3.798 -1.070 -0.243 C5 A5O 6 A5O C6 C6 C 0 1 Y N N -1.854 2.785 -4.162 5.181 -1.219 -0.044 C6 A5O 7 A5O N6 N6 N 0 1 N N N -0.859 2.054 -4.632 5.881 -2.233 -0.675 N6 A5O 8 A5O N7 N7 N 0 1 Y N N -3.975 1.606 -5.111 2.863 -1.728 -0.969 N7 A5O 9 A5O C8 C8 C 0 1 Y N N -5.210 1.968 -4.868 1.703 -1.165 -0.794 C8 A5O 10 A5O N9 N9 N 0 1 Y N N -5.336 3.052 -4.042 1.822 -0.108 0.058 N9 A5O 11 A5O "C1'" "C1'" C 0 1 N N R -6.548 3.675 -3.474 0.740 0.775 0.501 "C1'" A5O 12 A5O "C2'" "C2'" C 0 1 N N S -7.505 4.272 -4.489 0.655 2.020 -0.409 "C2'" A5O 13 A5O "O2'" "O2'" O 0 1 N N N -7.595 3.529 -5.695 1.214 1.740 -1.694 "O2'" A5O 14 A5O "C3'" "C3'" C 0 1 N N S -8.832 4.283 -3.716 -0.861 2.295 -0.527 "C3'" A5O 15 A5O "O3'" "O3'" O 0 1 N N N -9.150 5.514 -3.081 -1.178 3.584 0.003 "O3'" A5O 16 A5O "C4'" "C4'" C 0 1 N N R -8.631 3.202 -2.648 -1.512 1.184 0.327 "C4'" A5O 17 A5O "O4'" "O4'" O 0 1 N N N -7.295 2.738 -2.726 -0.537 0.118 0.353 "O4'" A5O 18 A5O "C5'" "C5'" C 0 1 N N N -9.583 2.025 -2.833 -2.812 0.706 -0.323 "C5'" A5O 19 A5O "O5'" "O5'" O 0 1 N N N -9.436 1.421 -4.112 -3.456 -0.235 0.537 "O5'" A5O 20 A5O OP1 OP1 O 0 1 N N N -11.752 0.484 -4.206 -5.346 -1.839 1.415 OP1 A5O 21 A5O OP2 OP2 O 0 1 N N N -9.924 -0.374 -5.795 -5.870 0.088 -0.129 OP2 A5O 22 A5O OP3 OP3 O 0 1 N Y N -9.826 -0.854 -3.323 -4.653 -1.889 -1.120 OP3 A5O 23 A5O H2 H2 H 0 1 N N N -2.016 5.411 -2.265 5.683 1.276 2.018 H2 A5O 24 A5O H8 H8 H 0 1 N N N -6.062 1.452 -5.286 0.781 -1.488 -1.256 H8 A5O 25 A5O HN6 HN6 H 0 1 N N N 0.011 2.433 -4.317 6.836 -2.326 -0.530 HN6 A5O 26 A5O HN6A HN6A H 0 0 N N N -0.952 1.114 -4.303 5.418 -2.850 -1.262 HN6A A5O 27 A5O "H5'" "H5'" H 0 1 N N N -10.616 2.388 -2.732 -3.471 1.559 -0.488 "H5'" A5O 28 A5O "H1'" "H1'" H 0 1 N N N -6.148 4.492 -2.855 0.895 1.073 1.538 "H1'" A5O 29 A5O "H2'" "H2'" H 0 1 N N N -7.182 5.263 -4.840 1.162 2.866 0.053 "H2'" A5O 30 A5O "H3'" "H3'" H 0 1 N N N -9.669 4.116 -4.410 -1.183 2.220 -1.565 "H3'" A5O 31 A5O "H4'" "H4'" H 0 1 N N N -8.843 3.646 -1.664 -1.704 1.546 1.337 "H4'" A5O 32 A5O "H5'A" "H5'A" H 0 0 N N N -9.367 1.272 -2.061 -2.588 0.231 -1.278 "H5'A" A5O 33 A5O "HO2'" "HO2'" H 0 0 N N N -8.207 3.954 -6.284 1.186 2.487 -2.307 "HO2'" A5O 34 A5O "HO3'" "HO3'" H 0 0 N N N -9.982 5.432 -2.629 -0.747 4.316 -0.459 "HO3'" A5O 35 A5O HOP1 HOP1 H 0 0 N N N -12.274 0.312 -4.981 -6.184 -2.297 1.264 HOP1 A5O 36 A5O HOP3 HOP3 H 0 0 N Y N -9.357 -1.580 -3.718 -3.999 -2.591 -0.996 HOP3 A5O 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A5O OP2 P DOUB N N 1 A5O P OP1 SING N N 2 A5O P "O5'" SING N N 3 A5O P OP3 SING N N 4 A5O C6 N1 DOUB Y N 5 A5O N1 C2 SING Y N 6 A5O N3 C2 DOUB Y N 7 A5O C2 H2 SING N N 8 A5O C4 N3 SING Y N 9 A5O C5 C4 DOUB Y N 10 A5O N9 C4 SING Y N 11 A5O N7 C5 SING Y N 12 A5O C5 C6 SING Y N 13 A5O N6 C6 SING N N 14 A5O HN6 N6 SING N N 15 A5O N6 HN6A SING N N 16 A5O N7 C8 DOUB Y N 17 A5O H8 C8 SING N N 18 A5O C8 N9 SING Y N 19 A5O N9 "C1'" SING N N 20 A5O "C2'" "C1'" SING N N 21 A5O "C1'" "H1'" SING N N 22 A5O "C1'" "O4'" SING N N 23 A5O "O2'" "C2'" SING N N 24 A5O "H2'" "C2'" SING N N 25 A5O "C2'" "C3'" SING N N 26 A5O "O2'" "HO2'" SING N N 27 A5O "H3'" "C3'" SING N N 28 A5O "C3'" "O3'" SING N N 29 A5O "C3'" "C4'" SING N N 30 A5O "O3'" "HO3'" SING N N 31 A5O "C5'" "C4'" SING N N 32 A5O "O4'" "C4'" SING N N 33 A5O "C4'" "H4'" SING N N 34 A5O "O5'" "C5'" SING N N 35 A5O "C5'" "H5'A" SING N N 36 A5O "C5'" "H5'" SING N N 37 A5O OP1 HOP1 SING N N 38 A5O OP3 HOP3 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A5O SMILES ACDLabs 11.02 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" A5O SMILES_CANONICAL CACTVS 3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3O" A5O SMILES CACTVS 3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" A5O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N" A5O SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N" A5O InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7+,10-/m1/s1" A5O InChIKey InChI 1.03 UDMBCSSLTHHNCD-UHTZMRCNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A5O "SYSTEMATIC NAME" ACDLabs 11.02 "9-(5-O-phosphono-beta-D-arabinofuranosyl)-9H-purin-6-amine" A5O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,4S,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A5O "Create component" 2009-10-09 RCSB A5O "Modify aromatic_flag" 2011-06-04 RCSB A5O "Modify descriptor" 2011-06-04 RCSB #