data_A5P # _chem_comp.id A5P _chem_comp.name ARABINOSE-5-PHOSPHATE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H13 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-10-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.126 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A5P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FY6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A5P C1 C1 C 0 1 N N N N N N 35.633 51.745 18.964 0.469 -0.647 4.232 C1 A5P 1 A5P O1 O1 O 0 1 N N N N N N 35.601 51.172 17.889 -0.107 -0.273 5.485 O1 A5P 2 A5P C2 C2 C 0 1 N N R N N N 34.931 53.085 19.110 -0.329 -0.011 3.093 C2 A5P 3 A5P O2 O2 O 0 1 N N N N N N 34.038 53.017 20.223 -0.298 1.411 3.226 O2 A5P 4 A5P C3 C3 C 0 1 N N S N N N 36.077 54.092 18.982 0.288 -0.411 1.752 C3 A5P 5 A5P O3 O3 O 0 1 N N N N N N 35.949 55.048 20.035 1.642 0.043 1.696 O3 A5P 6 A5P C4 C4 C 0 1 N N R N N N 36.105 54.641 17.549 -0.510 0.225 0.612 C4 A5P 7 A5P O4 O4 O 0 1 N N N N N N 35.886 53.796 16.417 -1.863 -0.229 0.668 O4 A5P 8 A5P C5 C5 C 0 1 N N N N N N 37.544 55.148 17.439 0.107 -0.174 -0.728 C5 A5P 9 A5P O5 O5 O 0 1 N N N N N N 38.343 55.072 16.258 -0.638 0.419 -1.792 O5 A5P 10 A5P P P P 0 1 N N N N N N 39.530 55.854 15.526 0.062 -0.041 -3.166 P A5P 11 A5P O1P O1P O 0 1 N N N N N N 40.785 55.466 16.215 0.033 -1.517 -3.265 O1P A5P 12 A5P O2P O2P O 0 1 N N N N N N 39.464 55.398 14.117 -0.731 0.595 -4.414 O2P A5P 13 A5P O3P O3P O 0 1 N N N N N N 39.240 57.307 15.652 1.589 0.467 -3.186 O3P A5P 14 A5P H11 H11 H 0 1 N N N N N N 35.250 51.052 19.750 1.502 -0.300 4.190 H11 A5P 15 A5P H12 H12 H 0 1 N N N N N N 36.697 51.862 19.275 0.446 -1.732 4.131 H12 A5P 16 A5P HO1 HO1 H 0 1 N N N N N N 36.039 50.334 17.797 0.425 -0.694 6.174 HO1 A5P 17 A5P HC2 HC2 H 0 1 N N N N N N 34.189 53.428 18.351 -1.361 -0.358 3.135 HC2 A5P 18 A5P HO2 HO2 H 0 1 N N N N N N 33.599 53.854 20.314 0.630 1.676 3.184 HO2 A5P 19 A5P HC3 HC3 H 0 1 N N N N N N 37.085 53.637 19.120 0.265 -1.496 1.650 HC3 A5P 20 A5P HO3 HO3 H 0 1 N N N N N N 36.660 55.672 19.955 1.617 1.005 1.789 HO3 A5P 21 A5P HC4 HC4 H 0 1 N N N N N N 35.237 55.337 17.470 -0.487 1.310 0.714 HC4 A5P 22 A5P HO4 HO4 H 0 1 N N N N N N 35.903 54.135 15.530 -1.839 -1.192 0.575 HO4 A5P 23 A5P H51 H51 H 0 1 N N N N N N 37.535 56.217 17.755 1.139 0.172 -0.771 H51 A5P 24 A5P H52 H52 H 0 1 N N N N N N 38.123 54.654 18.253 0.084 -1.259 -0.830 H52 A5P 25 A5P HOP2 2HOP H 0 0 N N N N N N 40.169 55.862 13.682 -0.279 0.296 -5.215 HOP2 A5P 26 A5P HOP3 3HOP H 0 0 N N N N N N 39.945 57.771 15.217 1.564 1.432 -3.120 HOP3 A5P 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A5P C1 O1 SING N N 1 A5P C1 C2 SING N N 2 A5P C1 H11 SING N N 3 A5P C1 H12 SING N N 4 A5P O1 HO1 SING N N 5 A5P C2 O2 SING N N 6 A5P C2 C3 SING N N 7 A5P C2 HC2 SING N N 8 A5P O2 HO2 SING N N 9 A5P C3 O3 SING N N 10 A5P C3 C4 SING N N 11 A5P C3 HC3 SING N N 12 A5P O3 HO3 SING N N 13 A5P C4 O4 SING N N 14 A5P C4 C5 SING N N 15 A5P C4 HC4 SING N N 16 A5P O4 HO4 SING N N 17 A5P C5 O5 SING N N 18 A5P C5 H51 SING N N 19 A5P C5 H52 SING N N 20 A5P O5 P SING N N 21 A5P P O1P DOUB N N 22 A5P P O2P SING N N 23 A5P P O3P SING N N 24 A5P O2P HOP2 SING N N 25 A5P O3P HOP3 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A5P SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)CO" A5P SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O" A5P SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O" A5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O" A5P SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(COP(=O)(O)O)O)O)O)O" A5P InChI InChI 1.03 "InChI=1S/C5H13O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h3-9H,1-2H2,(H2,10,11,12)/t3-,4-,5+/m1/s1" A5P InChIKey InChI 1.03 VJDOAZKNBQCAGE-WDCZJNDASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A5P "SYSTEMATIC NAME" ACDLabs 10.04 5-O-phosphono-D-arabinitol A5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R)-2,3,4,5-tetrahydroxypentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A5P "Create component" 2000-10-06 RCSB A5P "Modify descriptor" 2011-06-04 RCSB A5P "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A5P _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #