data_A7E # _chem_comp.id A7E _chem_comp.name "3-ethynyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms "8-aza-7-deaza-7-ethynyl Adenosine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.243 _chem_comp.one_letter_code A _chem_comp.three_letter_code A7E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NFP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A7E P P P 0 1 N N N 63.428 27.497 27.364 4.847 1.120 0.386 P A7E 1 A7E OP1 OP1 O 0 1 N N N 62.700 26.257 26.862 5.980 0.334 -0.152 OP1 A7E 2 A7E OP2 OP2 O 0 1 N N N 63.340 28.697 26.478 4.458 2.283 -0.657 OP2 A7E 3 A7E "O5'" "O5'" O 0 1 N N N 64.933 27.033 27.716 3.580 0.152 0.608 "O5'" A7E 4 A7E "C5'" "C5'" C 0 1 N N N 65.808 28.092 28.016 3.031 -0.662 -0.430 "C5'" A7E 5 A7E "C4'" "C4'" C 0 1 N N R 67.208 27.578 28.314 1.841 -1.453 0.117 "C4'" A7E 6 A7E "O4'" "O4'" O 0 1 N N N 67.227 26.905 29.587 0.771 -0.555 0.456 "O4'" A7E 7 A7E "C1'" "C1'" C 0 1 N N R 68.118 25.793 29.494 -0.465 -1.247 0.177 "C1'" A7E 8 A7E N9 N9 N 0 1 Y N N 67.332 24.547 29.490 -1.563 -0.293 0.003 N9 A7E 9 A7E N8 N8 N 0 1 Y N N 65.988 24.647 29.093 -1.493 0.893 -0.734 N8 A7E 10 A7E C7 C7 C 0 1 Y N N 65.541 23.384 29.135 -2.649 1.516 -0.688 C7 A7E 11 A7E C24 C24 C 0 1 N N N 64.293 23.038 28.843 -2.968 2.761 -1.320 C24 A7E 12 A7E C25 C25 C 0 1 N N N 63.100 22.675 28.565 -3.230 3.782 -1.837 C25 A7E 13 A7E C5 C5 C 0 1 Y N N 66.599 22.451 29.537 -3.551 0.701 0.128 C5 A7E 14 A7E C6 C6 C 0 1 Y N N 66.808 21.027 29.773 -4.887 0.814 0.545 C6 A7E 15 A7E N6 N6 N 0 1 N N N 65.782 20.169 29.618 -5.656 1.899 0.173 N6 A7E 16 A7E N1 N1 N 0 1 Y N N 68.048 20.648 30.159 -5.393 -0.150 1.308 N1 A7E 17 A7E C2 C2 C 0 1 Y N N 69.076 21.499 30.321 -4.662 -1.191 1.668 C2 A7E 18 A7E N3 N3 N 0 1 Y N N 68.946 22.810 30.101 -3.408 -1.338 1.301 N3 A7E 19 A7E C4 C4 C 0 1 Y N N 67.753 23.314 29.736 -2.813 -0.428 0.530 C4 A7E 20 A7E "C2'" "C2'" C 0 1 N N R 68.862 25.892 28.149 -0.170 -1.993 -1.150 "C2'" A7E 21 A7E "O2'" "O2'" O 0 1 N N N 70.096 26.677 28.168 -1.012 -3.138 -1.289 "O2'" A7E 22 A7E "C3'" "C3'" C 0 1 N N S 67.812 26.591 27.300 1.308 -2.413 -0.964 "C3'" A7E 23 A7E "O3'" "O3'" O 0 1 N N N 68.302 27.268 26.124 1.391 -3.767 -0.515 "O3'" A7E 24 A7E H2 H2 H 0 1 N N N 62.822 28.487 25.710 3.721 2.839 -0.369 H2 A7E 25 A7E H3 H3 H 0 1 N N N 65.852 28.776 27.156 2.698 -0.027 -1.252 H3 A7E 26 A7E H4 H4 H 0 1 N N N 65.429 28.633 28.896 3.792 -1.353 -0.791 H4 A7E 27 A7E H5 H5 H 0 1 N N N 67.879 28.448 28.366 2.145 -2.016 0.999 H5 A7E 28 A7E H6 H6 H 0 1 N N N 68.844 25.791 30.320 -0.696 -1.956 0.972 H6 A7E 29 A7E H7 H7 H 0 1 N N N 62.110 22.374 28.334 -3.464 4.694 -2.300 H7 A7E 30 A7E H8 H8 H 0 1 N N N 66.088 19.241 29.830 -5.274 2.595 -0.385 H8 A7E 31 A7E H9 H9 H 0 1 N N N 65.038 20.424 30.236 -6.577 1.965 0.468 H9 A7E 32 A7E H10 H10 H 0 1 N N N 70.033 21.112 30.638 -5.113 -1.951 2.288 H10 A7E 33 A7E H11 H11 H 0 1 N N N 69.050 24.882 27.756 -0.280 -1.325 -2.004 H11 A7E 34 A7E H12 H12 H 0 1 N N N 70.746 26.233 28.700 -0.865 -3.638 -2.104 H12 A7E 35 A7E H13 H13 H 0 1 N N N 67.039 25.861 27.017 1.862 -2.284 -1.895 H13 A7E 36 A7E H14 H14 H 0 1 N Y N 67.575 27.671 25.664 1.016 -4.410 -1.133 H14 A7E 37 A7E OP3 OP3 O 0 1 N Y N ? ? ? 5.271 1.780 1.792 OP3 A7E 38 A7E HOP3 H1 H 0 0 N Y N ? ? ? 6.030 2.377 1.733 H1 A7E 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A7E "O3'" "C3'" SING N N 1 A7E OP2 P SING N N 2 A7E OP1 P DOUB N N 3 A7E "C3'" "C2'" SING N N 4 A7E "C3'" "C4'" SING N N 5 A7E P "O5'" SING N N 6 A7E "O5'" "C5'" SING N N 7 A7E "C5'" "C4'" SING N N 8 A7E "C2'" "O2'" SING N N 9 A7E "C2'" "C1'" SING N N 10 A7E "C4'" "O4'" SING N N 11 A7E C25 C24 TRIP N N 12 A7E C24 C7 SING N N 13 A7E N8 C7 DOUB Y N 14 A7E N8 N9 SING Y N 15 A7E C7 C5 SING Y N 16 A7E N9 "C1'" SING N N 17 A7E N9 C4 SING Y N 18 A7E "C1'" "O4'" SING N N 19 A7E C5 C4 DOUB Y N 20 A7E C5 C6 SING Y N 21 A7E N6 C6 SING N N 22 A7E C4 N3 SING Y N 23 A7E C6 N1 DOUB Y N 24 A7E N3 C2 DOUB Y N 25 A7E N1 C2 SING Y N 26 A7E OP2 H2 SING N N 27 A7E "C5'" H3 SING N N 28 A7E "C5'" H4 SING N N 29 A7E "C4'" H5 SING N N 30 A7E "C1'" H6 SING N N 31 A7E C25 H7 SING N N 32 A7E N6 H8 SING N N 33 A7E N6 H9 SING N N 34 A7E C2 H10 SING N N 35 A7E "C2'" H11 SING N N 36 A7E "O2'" H12 SING N N 37 A7E "C3'" H13 SING N N 38 A7E "O3'" H14 SING N N 39 A7E P OP3 SING N N 40 A7E OP3 HOP3 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A7E SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2nc(C#C)c1c(ncnc12)N)C(O)C3O" A7E InChI InChI 1.03 "InChI=1S/C12H14N5O7P/c1-2-5-7-10(13)14-4-15-11(7)17(16-5)12-9(19)8(18)6(24-12)3-23-25(20,21)22/h1,4,6,8-9,12,18-19H,3H2,(H2,13,14,15)(H2,20,21,22)/t6-,8-,9-,12-/m1/s1" A7E InChIKey InChI 1.03 HCACDNLXBUUHEH-WOUKDFQISA-N A7E SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(nc(C#C)c12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" A7E SMILES CACTVS 3.385 "Nc1ncnc2n(nc(C#C)c12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" A7E SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1c2c(ncnc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N" A7E SMILES "OpenEye OEToolkits" 1.7.6 "C#Cc1c2c(ncnc2n(n1)C3C(C(C(O3)COP(=O)(O)O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A7E "SYSTEMATIC NAME" ACDLabs 12.01 "3-ethynyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine" A7E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(4-azanyl-3-ethynyl-pyrazolo[3,4-d]pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A7E "Create component" 2013-11-22 RCSB A7E "Initial release" 2014-07-02 RCSB A7E "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A7E _pdbx_chem_comp_synonyms.name "8-aza-7-deaza-7-ethynyl Adenosine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##