data_A7G
#
_chem_comp.id A7G
_chem_comp.name "1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H25 F2 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-07-08
_chem_comp.pdbx_modified_date 2018-01-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 449.496
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A7G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A7G F2 F1 F 0 1 N N N ? ? ? 7.088 -1.925 0.453 F2 A7G 1
A7G C16 C1 C 0 1 N N N ? ? ? 6.640 -0.634 0.149 C16 A7G 2
A7G F1 F2 F 0 1 N N N ? ? ? 6.667 -0.445 -1.237 F1 A7G 3
A7G O O1 O 0 1 N N N ? ? ? 5.304 -0.469 0.626 O A7G 4
A7G C15 C2 C 0 1 Y N N ? ? ? 4.361 -1.309 0.125 C15 A7G 5
A7G C14 C3 C 0 1 Y N N ? ? ? 4.715 -2.273 -0.807 C14 A7G 6
A7G C13 C4 C 0 1 Y N N ? ? ? 3.754 -3.127 -1.316 C13 A7G 7
A7G C12 C5 C 0 1 Y N N ? ? ? 2.442 -3.020 -0.896 C12 A7G 8
A7G C11 C6 C 0 1 Y N N ? ? ? 2.086 -2.059 0.033 C11 A7G 9
A7G C10 C7 C 0 1 Y N N ? ? ? 3.044 -1.208 0.549 C10 A7G 10
A7G C9 C8 C 0 1 N N N ? ? ? 2.655 -0.162 1.561 C9 A7G 11
A7G N2 N1 N 0 1 Y N N ? ? ? 2.398 1.108 0.877 N2 A7G 12
A7G C2 C9 C 0 1 Y N N ? ? ? 3.311 2.082 0.613 C2 A7G 13
A7G C1 C10 C 0 1 N N N ? ? ? 4.770 2.020 0.984 C1 A7G 14
A7G C8 C11 C 0 1 Y N N ? ? ? 1.184 1.536 0.376 C8 A7G 15
A7G C3 C12 C 0 1 Y N N ? ? ? 1.423 2.803 -0.187 C3 A7G 16
A7G N1 N2 N 0 1 Y N N ? ? ? 2.741 3.073 -0.007 N1 A7G 17
A7G C7 C13 C 0 1 Y N N ? ? ? -0.089 0.991 0.338 C7 A7G 18
A7G C6 C14 C 0 1 Y N N ? ? ? -1.124 1.702 -0.259 C6 A7G 19
A7G C5 C15 C 0 1 Y N N ? ? ? -0.880 2.961 -0.818 C5 A7G 20
A7G C4 C16 C 0 1 Y N N ? ? ? 0.370 3.504 -0.783 C4 A7G 21
A7G C17 C17 C 0 1 Y N N ? ? ? -2.489 1.125 -0.303 C17 A7G 22
A7G C21 C18 C 0 1 Y N N ? ? ? -2.745 -0.125 0.254 C21 A7G 23
A7G N3 N3 N 0 1 Y N N ? ? ? -3.957 -0.643 0.217 N3 A7G 24
A7G C20 C19 C 0 1 Y N N ? ? ? -4.971 -0.003 -0.346 C20 A7G 25
A7G C19 C20 C 0 1 Y N N ? ? ? -4.792 1.250 -0.924 C19 A7G 26
A7G C18 C21 C 0 1 Y N N ? ? ? -3.539 1.831 -0.901 C18 A7G 27
A7G N4 N4 N 0 1 N N N ? ? ? -6.230 -0.591 -0.360 N4 A7G 28
A7G C25 C22 C 0 1 N N N ? ? ? -6.204 -1.905 0.298 C25 A7G 29
A7G C24 C23 C 0 1 N N N ? ? ? -7.587 -2.552 0.191 C24 A7G 30
A7G N5 N5 N 0 1 N N N ? ? ? -8.586 -1.673 0.816 N5 A7G 31
A7G C23 C24 C 0 1 N N N ? ? ? -8.611 -0.359 0.159 C23 A7G 32
A7G C22 C25 C 0 1 N N N ? ? ? -7.228 0.288 0.264 C22 A7G 33
A7G H1 H1 H 0 1 N N N ? ? ? 7.291 0.098 0.628 H1 A7G 34
A7G H2 H2 H 0 1 N N N ? ? ? 5.740 -2.357 -1.136 H2 A7G 35
A7G H3 H3 H 0 1 N N N ? ? ? 4.030 -3.877 -2.042 H3 A7G 36
A7G H4 H4 H 0 1 N N N ? ? ? 1.692 -3.688 -1.294 H4 A7G 37
A7G H5 H5 H 0 1 N N N ? ? ? 1.061 -1.981 0.363 H5 A7G 38
A7G H6 H6 H 0 1 N N N ? ? ? 1.755 -0.481 2.087 H6 A7G 39
A7G H7 H7 H 0 1 N N N ? ? ? 3.467 -0.030 2.278 H7 A7G 40
A7G H8 H8 H 0 1 N N N ? ? ? 5.333 1.562 0.171 H8 A7G 41
A7G H9 H9 H 0 1 N N N ? ? ? 5.143 3.029 1.161 H9 A7G 42
A7G H10 H10 H 0 1 N N N ? ? ? 4.890 1.425 1.890 H10 A7G 43
A7G H11 H11 H 0 1 N N N ? ? ? -0.276 0.018 0.769 H11 A7G 44
A7G H12 H12 H 0 1 N N N ? ? ? -1.689 3.507 -1.280 H12 A7G 45
A7G H13 H13 H 0 1 N N N ? ? ? 0.547 4.478 -1.217 H13 A7G 46
A7G H14 H14 H 0 1 N N N ? ? ? -1.943 -0.677 0.721 H14 A7G 47
A7G H15 H15 H 0 1 N N N ? ? ? -5.624 1.765 -1.382 H15 A7G 48
A7G H16 H16 H 0 1 N N N ? ? ? -3.372 2.805 -1.338 H16 A7G 49
A7G H17 H17 H 0 1 N N N ? ? ? -5.466 -2.542 -0.191 H17 A7G 50
A7G H18 H18 H 0 1 N N N ? ? ? -5.940 -1.781 1.348 H18 A7G 51
A7G H19 H19 H 0 1 N N N ? ? ? -7.839 -2.701 -0.858 H19 A7G 52
A7G H20 H20 H 0 1 N N N ? ? ? -7.579 -3.515 0.704 H20 A7G 53
A7G H21 H21 H 0 1 N N N ? ? ? -9.500 -2.101 0.806 H21 A7G 54
A7G H23 H23 H 0 1 N N N ? ? ? -8.875 -0.483 -0.892 H23 A7G 55
A7G H24 H24 H 0 1 N N N ? ? ? -9.349 0.277 0.646 H24 A7G 56
A7G H25 H25 H 0 1 N N N ? ? ? -6.976 0.437 1.314 H25 A7G 57
A7G H26 H26 H 0 1 N N N ? ? ? -7.237 1.250 -0.248 H26 A7G 58
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A7G C1 C2 SING N N 1
A7G N1 C2 DOUB Y N 2
A7G N1 C3 SING Y N 3
A7G C2 N2 SING Y N 4
A7G C3 C4 DOUB Y N 5
A7G C3 C8 SING Y N 6
A7G N2 C9 SING N N 7
A7G N2 C8 SING Y N 8
A7G C4 C5 SING Y N 9
A7G C9 C10 SING N N 10
A7G C8 C7 DOUB Y N 11
A7G C11 C10 DOUB Y N 12
A7G C11 C12 SING Y N 13
A7G C5 C6 DOUB Y N 14
A7G C10 C15 SING Y N 15
A7G C7 C6 SING Y N 16
A7G C6 C17 SING N N 17
A7G C12 C13 DOUB Y N 18
A7G C15 O SING N N 19
A7G C15 C14 DOUB Y N 20
A7G F1 C16 SING N N 21
A7G O C16 SING N N 22
A7G C16 F2 SING N N 23
A7G C13 C14 SING Y N 24
A7G C17 C18 DOUB Y N 25
A7G C17 C21 SING Y N 26
A7G C18 C19 SING Y N 27
A7G C21 N3 DOUB Y N 28
A7G C19 C20 DOUB Y N 29
A7G N3 C20 SING Y N 30
A7G C20 N4 SING N N 31
A7G N4 C25 SING N N 32
A7G N4 C22 SING N N 33
A7G C25 C24 SING N N 34
A7G C22 C23 SING N N 35
A7G C24 N5 SING N N 36
A7G C23 N5 SING N N 37
A7G C16 H1 SING N N 38
A7G C14 H2 SING N N 39
A7G C13 H3 SING N N 40
A7G C12 H4 SING N N 41
A7G C11 H5 SING N N 42
A7G C9 H6 SING N N 43
A7G C9 H7 SING N N 44
A7G C1 H8 SING N N 45
A7G C1 H9 SING N N 46
A7G C1 H10 SING N N 47
A7G C7 H11 SING N N 48
A7G C5 H12 SING N N 49
A7G C4 H13 SING N N 50
A7G C21 H14 SING N N 51
A7G C19 H15 SING N N 52
A7G C18 H16 SING N N 53
A7G C25 H17 SING N N 54
A7G C25 H18 SING N N 55
A7G C24 H19 SING N N 56
A7G C24 H20 SING N N 57
A7G N5 H21 SING N N 58
A7G C23 H23 SING N N 59
A7G C23 H24 SING N N 60
A7G C22 H25 SING N N 61
A7G C22 H26 SING N N 62
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A7G SMILES ACDLabs 12.01 "FC(F)Oc1ccccc1Cn5c4cc(c2ccc(nc2)N3CCNCC3)ccc4nc5C"
A7G InChI InChI 1.03 "InChI=1S/C25H25F2N5O/c1-17-30-21-8-6-18(19-7-9-24(29-15-19)31-12-10-28-11-13-31)14-22(21)32(17)16-20-4-2-3-5-23(20)33-25(26)27/h2-9,14-15,25,28H,10-13,16H2,1H3"
A7G InChIKey InChI 1.03 LRHACCJNWLLTDS-UHFFFAOYSA-N
A7G SMILES_CANONICAL CACTVS 3.385 "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"
A7G SMILES CACTVS 3.385 "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"
A7G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"
A7G SMILES "OpenEye OEToolkits" 1.7.6 "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A7G "SYSTEMATIC NAME" ACDLabs 12.01 "1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole"
A7G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[[2-[bis(fluoranyl)methoxy]phenyl]methyl]-2-methyl-6-(6-piperazin-1-ylpyridin-3-yl)benzimidazole"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A7G "Create component" 2017-07-08 RCSB
A7G "Initial release" 2018-01-24 RCSB
##